Wall clock time and date at job start Tue Mar 31 2020 18:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99777 * 2 1 4 4 H 1.48504 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47202 * 299.99548 * 3 2 1 6 6 H 1.48499 * 109.47289 * 60.00278 * 3 2 1 7 7 C 1.38810 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99838 * 207.28307 * 7 2 1 9 9 N 1.36931 * 120.00094 * 27.28196 * 7 2 1 10 10 C 1.47434 * 125.64656 * 13.30664 * 9 7 2 11 11 C 1.55126 * 104.72085 * 155.81833 * 10 9 7 12 12 C 1.55156 * 101.48754 * 37.29781 * 11 10 9 13 13 H 1.09004 * 110.72252 * 82.69187 * 12 11 10 14 14 C 1.52998 * 110.87413 * 205.89838 * 12 11 10 15 15 C 1.53041 * 109.46038 * 295.08750 * 14 12 11 16 16 C 1.53192 * 109.31242 * 178.59845 * 15 14 12 17 17 N 1.46931 * 108.76464 * 54.66202 * 16 15 14 18 18 C 1.34770 * 120.63418 * 126.35663 * 17 16 15 19 19 O 1.21277 * 120.00475 * 180.02562 * 18 17 16 20 20 C 1.50706 * 119.99768 * 0.02742 * 18 17 16 21 21 N 1.46506 * 109.46844 * 179.97438 * 20 18 17 22 22 N 1.28601 * 124.61540 * 269.69389 * 21 20 18 23 23 C 1.31378 * 108.71515 * 179.83628 * 22 21 20 24 24 C 1.39674 * 105.90099 * 0.40709 * 23 22 21 25 25 N 1.28595 * 124.62004 * 89.99732 * 21 20 18 26 26 C 1.46924 * 118.73555 * 306.38325 * 17 16 15 27 27 C 1.53046 * 109.46079 * 175.03662 * 14 12 11 28 28 C 1.47021 * 125.65173 * 193.62123 * 9 7 2 29 29 H 0.96995 * 120.00585 * 185.85231 * 1 2 3 30 30 H 1.08997 * 110.36794 * 274.75217 * 10 9 7 31 31 H 1.08999 * 110.36056 * 37.07517 * 10 9 7 32 32 H 1.09000 * 111.19658 * 279.19526 * 11 10 9 33 33 H 1.08999 * 110.90589 * 155.27774 * 11 10 9 34 34 H 1.08994 * 109.46217 * 55.06486 * 14 12 11 35 35 H 1.09000 * 109.50144 * 298.56697 * 15 14 12 36 36 H 1.09000 * 109.49436 * 58.66753 * 15 14 12 37 37 H 1.09001 * 109.60130 * 294.87356 * 16 15 14 38 38 H 1.09007 * 109.70130 * 174.50801 * 16 15 14 39 39 H 1.08998 * 109.46817 * 299.99555 * 20 18 17 40 40 H 1.08998 * 109.47054 * 59.99772 * 20 18 17 41 41 H 1.08003 * 127.04547 * 180.16912 * 23 22 21 42 42 H 1.07997 * 127.04573 * 179.72693 * 24 23 22 43 43 H 1.09004 * 109.58610 * 293.82012 * 26 17 16 44 44 H 1.09002 * 109.58542 * 173.39608 * 26 17 16 45 45 H 1.08999 * 109.49861 * 301.33393 * 27 14 12 46 46 H 1.09004 * 109.49892 * 61.40214 * 27 14 12 47 47 H 1.08998 * 109.87752 * 300.43626 * 28 9 7 48 48 H 1.09001 * 109.88483 * 61.45029 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0001 -1.2539 0.4293 9 7 1.4398 -2.3223 -0.5425 10 6 0.2378 -2.3468 -1.3959 11 6 0.3682 -3.6527 -2.2230 12 6 0.9848 -4.6200 -1.1783 13 1 0.2095 -5.0425 -0.5391 14 6 1.7809 -5.7305 -1.8666 15 6 0.8315 -6.6018 -2.6922 16 6 1.6366 -7.6911 -3.4077 17 7 2.4207 -8.4316 -2.4098 18 6 2.3357 -9.7742 -2.3282 19 8 2.9877 -10.3739 -1.4999 20 6 1.4304 -10.5303 -3.2662 21 7 1.5159 -11.9641 -2.9775 22 7 2.3496 -12.7721 -3.5305 23 6 2.1567 -13.9763 -3.0420 24 6 1.1080 -13.8548 -2.1275 25 7 0.7639 -12.5870 -2.1408 26 6 3.2988 -7.6806 -1.5024 27 6 2.4752 -6.5911 -0.8086 28 6 1.9208 -3.7003 -0.3659 29 1 -0.4851 -0.8356 0.0856 30 1 -0.6626 -2.3720 -0.7822 31 1 0.2238 -1.4798 -2.0563 32 1 1.0380 -3.5162 -3.0721 33 1 -0.6098 -4.0043 -2.5516 34 1 2.5299 -5.2872 -2.5227 35 1 0.0973 -7.0653 -2.0332 36 1 0.3198 -5.9840 -3.4302 37 1 2.3084 -7.2323 -4.1331 38 1 0.9578 -8.3738 -3.9190 39 1 0.4029 -10.1926 -3.1304 40 1 1.7397 -10.3481 -4.2953 41 1 2.6958 -14.8765 -3.2981 42 1 0.6695 -14.6419 -1.5320 43 1 4.1062 -7.2209 -2.0725 44 1 3.7151 -8.3558 -0.7547 45 1 3.1336 -5.9658 -0.2057 46 1 1.7254 -7.0543 -0.1671 47 1 2.9413 -3.7874 -0.7389 48 1 1.8874 -3.9723 0.6891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039144544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:31 Heat of formation + Delta-G solvation = 73.953581 kcal Electronic energy + Delta-G solvation = -28718.103600 eV Core-core repulsion = 24810.294058 eV Total energy + Delta-G solvation = -3907.809542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.48908 -41.45351 -39.96345 -38.17224 -35.53263 -34.85114 -33.55873 -33.39051 -32.33367 -30.88743 -29.96838 -28.83539 -26.73406 -25.34171 -24.36826 -23.81966 -23.15194 -22.06553 -21.81600 -20.89955 -20.27018 -19.60145 -18.89002 -18.41504 -17.21686 -16.93395 -16.53501 -16.44436 -16.33588 -15.79315 -15.69988 -15.38035 -15.20240 -15.06531 -14.82163 -14.55837 -14.47888 -14.29541 -13.73955 -13.49516 -13.36225 -13.14858 -12.71001 -12.61615 -12.57781 -12.46797 -12.33907 -12.21319 -11.90028 -11.83525 -11.80216 -11.57702 -11.50218 -11.44053 -11.33304 -11.20989 -11.11464 -10.54024 -10.24666 -9.80027 -9.03310 -8.35297 -5.33356 0.72575 1.23030 1.30731 1.55117 1.61442 1.63756 1.79853 1.93831 2.62614 3.17234 3.17725 3.28578 3.50670 3.59813 3.69392 3.80088 3.90407 3.99197 4.02319 4.06382 4.15530 4.21437 4.34433 4.36782 4.39291 4.51107 4.54125 4.58688 4.71063 4.75279 4.81449 4.86728 4.92252 4.94952 5.03073 5.06060 5.07726 5.14710 5.23848 5.29267 5.34255 5.37181 5.45685 5.56341 5.64233 5.67196 6.19147 6.30463 6.87428 6.90655 7.35919 7.70496 8.28577 8.97990 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.038991 B = 0.002001 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.950018 B =13991.574993 C =14225.251973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.083 4.083 3 Si 1.121 2.879 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.291 1.291 7 C -0.346 4.346 8 H 0.058 0.942 9 N -0.631 5.631 10 C 0.141 3.859 11 C -0.109 4.109 12 C -0.077 4.077 13 H 0.069 0.931 14 C -0.064 4.064 15 C -0.126 4.126 16 C 0.100 3.900 17 N -0.598 5.598 18 C 0.500 3.500 19 O -0.581 6.581 20 C 0.120 3.880 21 N -0.158 5.158 22 N -0.312 5.312 23 C -0.025 4.025 24 C -0.027 4.027 25 N -0.314 5.314 26 C 0.118 3.882 27 C -0.124 4.124 28 C 0.137 3.863 29 H 0.256 0.744 30 H -0.001 1.001 31 H 0.017 0.983 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.231 0.769 42 H 0.230 0.770 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.029 0.971 48 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 -26.346 -13.011 29.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.278 4.278 3 Si 0.945 3.055 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.218 1.218 7 C -0.474 4.474 8 H 0.076 0.924 9 N -0.358 5.358 10 C 0.016 3.984 11 C -0.147 4.147 12 C -0.096 4.096 13 H 0.088 0.912 14 C -0.083 4.083 15 C -0.164 4.164 16 C -0.021 4.021 17 N -0.331 5.331 18 C 0.287 3.713 19 O -0.461 6.461 20 C -0.003 4.003 21 N -0.058 5.058 22 N -0.152 5.152 23 C -0.208 4.208 24 C -0.209 4.209 25 N -0.155 5.155 26 C -0.005 4.005 27 C -0.162 4.162 28 C 0.012 3.988 29 H 0.067 0.933 30 H 0.016 0.984 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.137 0.863 39 H 0.182 0.818 40 H 0.187 0.813 41 H 0.248 0.752 42 H 0.246 0.754 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.047 0.953 48 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 1.352 -23.561 -12.896 26.894 hybrid contribution 0.236 -2.059 1.285 2.438 sum 1.588 -25.620 -11.611 28.173 Atomic orbital electron populations 1.70836 1.07543 1.29563 1.51449 1.27151 0.96629 1.04450 0.99587 0.82796 0.74129 0.71826 0.76771 1.19855 1.21108 1.21815 1.20090 0.99094 0.89470 1.38778 0.92414 1.44954 1.31607 1.02502 1.56739 1.21567 0.88417 0.96857 0.91556 1.22797 1.01747 0.93160 0.96971 1.22074 0.96900 0.94291 0.96327 0.91231 1.21045 0.97289 0.93715 0.96268 1.21977 0.97636 0.96811 0.99993 1.22216 0.95205 0.94898 0.89801 1.48177 1.44270 1.04716 1.35903 1.20981 0.82766 0.82962 0.84554 1.90753 1.47229 1.68793 1.39324 1.22093 1.04172 0.71907 1.02112 1.47606 1.21819 1.09318 1.27033 1.73997 1.15531 1.02661 1.23041 1.25453 1.00317 0.96395 0.98661 1.25448 0.99358 0.93506 1.02637 1.74017 1.20083 1.08961 1.12432 1.21555 0.92501 0.93156 0.93251 1.21905 0.99560 0.96584 0.98151 1.21516 0.96795 0.84296 0.96170 0.93344 0.98357 0.96404 0.90370 0.88694 0.90325 0.91357 0.88134 0.88581 0.86294 0.81754 0.81294 0.75241 0.75395 0.89786 0.91193 0.91343 0.92453 0.95253 0.98093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.66 12.82 21.65 0.28 -59.38 16 2 C -0.08 -4.89 5.09 84.86 0.43 -4.46 16 3 Si 1.12 52.33 30.00 68.60 2.06 54.39 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 7 C -0.35 -20.22 10.05 84.03 0.84 -19.37 16 8 H 0.06 3.37 7.96 -2.91 -0.02 3.35 16 9 N -0.63 -32.73 3.33 -691.54 -2.30 -35.03 16 10 C 0.14 6.60 5.22 86.93 0.45 7.06 16 11 C -0.11 -3.36 5.63 32.06 0.18 -3.18 16 12 C -0.08 -2.25 2.48 -9.61 -0.02 -2.28 16 13 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 14 C -0.06 -1.30 1.53 -10.77 -0.02 -1.32 16 15 C -0.13 -1.60 5.21 30.67 0.16 -1.44 16 16 C 0.10 0.85 6.34 86.36 0.55 1.40 16 17 N -0.60 -9.72 2.97 -818.89 -2.43 -12.15 16 18 C 0.50 10.28 7.77 87.66 0.68 10.96 16 19 O -0.58 -18.37 15.84 -3.02 -0.05 -18.42 16 20 C 0.12 1.59 5.37 85.63 0.46 2.05 16 21 N -0.16 -3.27 3.44 -190.79 -0.66 -3.93 16 22 N -0.31 -6.63 12.05 -56.86 -0.69 -7.32 16 23 C -0.03 -0.40 12.20 85.11 1.04 0.64 16 24 C -0.03 -0.43 12.20 85.11 1.04 0.61 16 25 N -0.31 -6.92 12.05 -56.87 -0.69 -7.60 16 26 C 0.12 2.34 6.43 86.36 0.56 2.90 16 27 C -0.12 -2.67 5.17 30.67 0.16 -2.52 16 28 C 0.14 5.59 5.83 86.73 0.51 6.10 16 29 H 0.26 16.27 5.83 -92.71 -0.54 15.73 16 30 H 0.00 -0.07 6.84 -2.39 -0.02 -0.08 16 31 H 0.02 0.92 7.73 -2.39 -0.02 0.90 16 32 H 0.08 2.24 8.05 -2.39 -0.02 2.22 16 33 H 0.09 2.33 8.10 -2.39 -0.02 2.31 16 34 H 0.08 1.60 8.13 -2.39 -0.02 1.58 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 1.02 7.38 -2.39 -0.02 1.01 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.12 0.18 5.93 -2.38 -0.01 0.16 16 39 H 0.17 1.17 7.69 -2.39 -0.02 1.15 16 40 H 0.17 1.01 7.94 -2.39 -0.02 0.99 16 41 H 0.23 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.23 1.74 8.06 -2.91 -0.02 1.71 16 43 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.07 1.72 7.00 -2.39 -0.02 1.70 16 45 H 0.07 1.67 7.11 -2.39 -0.02 1.65 16 46 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 47 H 0.03 1.17 7.57 -2.39 -0.02 1.15 16 48 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 Total: -1.00 -88.52 378.56 3.72 -84.80 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.18 Total: 7.49 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 7.01 Total: -2.85 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -6.48 Total: -125.40 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.05 Total: -18.42 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.06 Total: 54.39 kcal Total: -88.52 3.72 -84.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039144544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.752 kcal (2) G-P(sol) polarization free energy of solvation -88.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds