Wall clock time and date at job start Tue Mar 31 2020 18:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99737 * 2 1 4 4 H 1.48498 * 109.47242 * 275.20771 * 3 2 1 5 5 H 1.48497 * 109.47088 * 35.21039 * 3 2 1 6 6 H 1.48497 * 109.46636 * 155.20734 * 3 2 1 7 7 C 1.38808 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99930 * 339.00102 * 7 2 1 9 9 N 1.36936 * 120.00255 * 158.99884 * 7 2 1 10 10 C 1.47431 * 125.64399 * 327.22520 * 9 7 2 11 11 C 1.54911 * 104.82895 * 155.83564 * 10 9 7 12 12 C 1.55158 * 101.57983 * 37.00977 * 11 10 9 13 13 H 1.08998 * 110.72227 * 83.03944 * 12 11 10 14 14 C 1.53003 * 110.71823 * 206.13421 * 12 11 10 15 15 H 1.09000 * 109.70055 * 74.92429 * 14 12 11 16 16 C 1.53195 * 109.58634 * 314.57317 * 14 12 11 17 17 C 1.53044 * 109.31352 * 185.57942 * 16 14 12 18 18 C 1.53042 * 109.53906 * 61.35996 * 17 16 14 19 19 C 1.53622 * 109.24097 * 298.51631 * 18 17 16 20 20 N 1.46919 * 108.54514 * 54.85590 * 19 18 17 21 21 C 1.34781 * 120.63028 * 126.36986 * 20 19 18 22 22 O 1.21284 * 119.99988 * 175.53057 * 21 20 19 23 23 C 1.50694 * 119.99987 * 355.52699 * 21 20 19 24 24 N 1.46505 * 109.47162 * 180.02562 * 23 21 20 25 25 N 1.28600 * 124.61987 * 269.69718 * 24 23 21 26 26 C 1.31375 * 108.71898 * 179.82933 * 25 24 23 27 27 C 1.39679 * 105.89896 * 0.41587 * 26 25 24 28 28 N 1.28601 * 124.61704 * 90.00016 * 24 23 21 29 29 C 1.47013 * 125.65166 * 147.18488 * 9 7 2 30 30 H 0.97005 * 120.00494 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.36961 * 37.00211 * 10 9 7 32 32 H 1.09004 * 110.45938 * 274.71998 * 10 9 7 33 33 H 1.09002 * 111.00680 * 278.93463 * 11 10 9 34 34 H 1.08994 * 111.00397 * 155.08221 * 11 10 9 35 35 H 1.08998 * 109.49835 * 305.52711 * 16 14 12 36 36 H 1.08994 * 109.49751 * 65.62541 * 16 14 12 37 37 H 1.08997 * 109.46262 * 181.38261 * 17 16 14 38 38 H 1.09000 * 109.45650 * 301.35776 * 17 16 14 39 39 H 1.09004 * 109.49349 * 58.58998 * 18 17 16 40 40 H 1.09001 * 109.49851 * 178.68777 * 18 17 16 41 41 H 1.08996 * 109.73976 * 295.10874 * 19 18 17 42 42 H 1.09007 * 109.66114 * 174.55287 * 19 18 17 43 43 H 1.08997 * 109.47556 * 60.00106 * 23 21 20 44 44 H 1.09001 * 109.47445 * 300.00340 * 23 21 20 45 45 H 1.07999 * 127.04804 * 180.16536 * 26 25 24 46 46 H 1.07998 * 127.04915 * 179.76754 * 27 26 25 47 47 H 1.09004 * 109.88223 * 61.67552 * 29 9 7 48 48 H 1.09004 * 109.87972 * 300.51295 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3876 2.1101 -1.3943 5 1 1.5069 2.6184 0.8072 6 1 3.5983 1.4109 0.5871 7 6 2.0103 -1.2021 -0.0005 8 1 1.5241 -2.1065 0.3342 9 7 3.3114 -1.2413 -0.4256 10 6 3.8975 -0.3912 -1.4778 11 6 5.4136 -0.3572 -1.1614 12 6 5.6600 -1.8053 -0.6619 13 1 5.8061 -2.4836 -1.5025 14 6 6.8605 -1.8541 0.2855 15 1 6.5813 -1.4393 1.2540 16 6 8.0159 -1.0415 -0.3074 17 6 9.2562 -1.2079 0.5738 18 6 9.6680 -2.6815 0.6049 19 6 8.5282 -3.5130 1.2128 20 7 7.2989 -3.2463 0.4537 21 6 6.5839 -4.2599 -0.0736 22 8 5.5292 -4.0338 -0.6281 23 6 7.0950 -5.6740 0.0258 24 7 6.1444 -6.5833 -0.6191 25 7 5.1640 -7.1606 -0.0196 26 6 4.5141 -7.8998 -0.8898 27 6 5.1867 -7.7420 -2.1038 28 7 6.1799 -6.9172 -1.8605 29 6 4.3554 -2.1375 0.0924 30 1 -0.4851 0.8400 0.0004 31 1 3.4777 0.6137 -1.4314 32 1 3.7249 -0.8286 -2.4612 33 1 5.6332 0.3689 -0.3786 34 1 5.9955 -0.1493 -2.0593 35 1 8.2339 -1.3996 -1.3135 36 1 7.7370 0.0113 -0.3479 37 1 10.0729 -0.6111 0.1677 38 1 9.0299 -0.8729 1.5860 39 1 9.8704 -3.0242 -0.4099 40 1 10.5649 -2.7959 1.2137 41 1 8.3823 -3.2309 2.2555 42 1 8.7738 -4.5732 1.1500 43 1 7.2054 -5.9476 1.0750 44 1 8.0619 -5.7468 -0.4723 45 1 3.6414 -8.5082 -0.7037 46 1 4.9405 -8.2032 -3.0488 47 1 4.0763 -3.1755 -0.0889 48 1 4.4917 -1.9693 1.1607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039208060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:02 Heat of formation + Delta-G solvation = 143.067785 kcal Electronic energy + Delta-G solvation = -30571.664387 eV Core-core repulsion = 26666.851862 eV Total energy + Delta-G solvation = -3904.812525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.51637 -40.87697 -37.72822 -37.21616 -34.10834 -33.04181 -32.92211 -32.37591 -31.44345 -29.15679 -28.74212 -27.70918 -25.39545 -24.03392 -23.29948 -22.86668 -22.04449 -21.08067 -20.29572 -19.71476 -19.43129 -17.68181 -17.42233 -16.80665 -16.24117 -15.74809 -15.67930 -15.30624 -14.99359 -14.79587 -14.51784 -14.28541 -14.06493 -13.74873 -13.46255 -13.41496 -13.27200 -12.69897 -12.67429 -12.49761 -12.03309 -11.64006 -11.61958 -11.54473 -11.36192 -11.22384 -11.05202 -10.92746 -10.77405 -10.63811 -10.39443 -10.27547 -10.13796 -9.94015 -9.72563 -9.58818 -9.33995 -8.94881 -8.61234 -8.34514 -6.60385 -5.85670 -3.20200 1.71818 2.12332 2.41834 2.54370 2.86725 3.40010 3.52075 3.59122 4.06875 4.09543 4.39356 4.54576 4.59600 4.63453 4.65193 4.76003 4.81659 5.00783 5.05422 5.06877 5.19083 5.26902 5.35285 5.36752 5.46290 5.52362 5.58457 5.61804 5.70659 5.75765 5.84600 5.92101 5.98959 6.02286 6.14522 6.19413 6.19798 6.31697 6.53364 6.59315 6.64780 6.69760 6.93509 7.06884 7.20653 7.28321 8.04564 8.19714 8.34098 8.49576 9.03904 9.83086 10.44474 11.31636 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.004729 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.763275 B = 5919.769535 C = 8115.548884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.026 3.974 3 Si 0.886 3.114 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.272 1.272 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.611 5.611 10 C 0.124 3.876 11 C -0.136 4.136 12 C -0.091 4.091 13 H 0.100 0.900 14 C 0.160 3.840 15 H 0.075 0.925 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.134 4.134 19 C 0.104 3.896 20 N -0.605 5.605 21 C 0.484 3.516 22 O -0.475 6.475 23 C 0.124 3.876 24 N -0.144 5.144 25 N -0.279 5.279 26 C -0.023 4.023 27 C -0.025 4.025 28 N -0.283 5.283 29 C 0.149 3.851 30 H 0.261 0.739 31 H 0.037 0.963 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.197 0.803 46 H 0.197 0.803 47 H 0.061 0.939 48 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.040 -11.560 0.653 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.173 4.173 3 Si 0.717 3.283 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.197 1.197 7 C -0.365 4.365 8 H 0.098 0.902 9 N -0.338 5.338 10 C -0.001 4.001 11 C -0.175 4.175 12 C -0.110 4.110 13 H 0.118 0.882 14 C 0.058 3.942 15 H 0.093 0.907 16 C -0.168 4.168 17 C -0.159 4.159 18 C -0.173 4.173 19 C -0.019 4.019 20 N -0.341 5.341 21 C 0.269 3.731 22 O -0.348 6.348 23 C -0.001 4.001 24 N -0.044 5.044 25 N -0.119 5.119 26 C -0.206 4.206 27 C -0.208 4.208 28 N -0.124 5.124 29 C 0.025 3.975 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.214 0.786 46 H 0.213 0.787 47 H 0.079 0.921 48 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 24.125 -10.509 1.019 26.334 hybrid contribution -0.227 0.516 -0.339 0.657 sum 23.898 -9.993 0.680 25.912 Atomic orbital electron populations 1.69854 1.05768 1.26425 1.53159 1.25330 0.95157 0.97594 0.99222 0.86725 0.80172 0.84542 0.76810 1.21627 1.23251 1.19707 1.18573 0.84262 0.94300 1.39323 0.90186 1.44704 1.07222 1.42929 1.38946 1.21777 0.90685 0.94954 0.92709 1.22962 0.97747 0.96755 1.00038 1.22583 0.93500 0.96053 0.98867 0.88176 1.21399 0.94096 0.79165 0.99536 0.90690 1.22020 0.94367 1.00890 0.99547 1.21540 0.97887 0.95864 1.00572 1.21998 0.97495 0.95973 1.01802 1.21893 0.84050 0.99998 0.95951 1.47987 1.25357 1.06397 1.54337 1.20447 0.85205 0.86076 0.81335 1.90935 1.20253 1.82537 1.41091 1.21751 0.90812 0.87021 1.00502 1.47304 1.20981 1.32425 1.03720 1.74063 1.00443 1.09653 1.27787 1.24779 1.02851 1.02552 0.90403 1.24751 0.94466 1.00527 1.01016 1.74006 1.23882 1.14676 0.99836 1.21838 0.86518 0.95373 0.93808 0.92879 0.94490 0.95520 0.91902 0.91895 0.91380 0.90187 0.91606 0.91655 0.91307 0.90673 0.90660 0.90147 0.85132 0.85128 0.78591 0.78651 0.92118 0.97049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.59 13.97 55.49 0.78 -28.81 16 2 C 0.03 0.81 5.43 -17.43 -0.09 0.71 16 3 Si 0.89 23.92 24.85 -169.99 -4.22 19.69 16 4 H -0.29 -7.59 6.81 56.52 0.38 -7.21 16 5 H -0.30 -8.21 7.11 56.52 0.40 -7.80 16 6 H -0.27 -7.11 7.09 56.52 0.40 -6.71 16 7 C -0.24 -7.36 10.49 -15.06 -0.16 -7.52 16 8 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.61 -16.55 2.98 -170.07 -0.51 -17.06 16 10 C 0.12 2.97 6.27 -2.52 -0.02 2.96 16 11 C -0.14 -2.54 5.11 -24.58 -0.13 -2.67 16 12 C -0.09 -1.65 1.92 -88.78 -0.17 -1.82 16 13 H 0.10 1.95 5.94 -51.95 -0.31 1.64 16 14 C 0.16 2.17 2.60 -67.60 -0.18 1.99 16 15 H 0.08 1.09 7.67 -51.93 -0.40 0.69 16 16 C -0.13 -1.37 4.74 -26.61 -0.13 -1.50 16 17 C -0.12 -0.92 5.88 -26.69 -0.16 -1.08 16 18 C -0.13 -0.80 6.10 -26.39 -0.16 -0.96 16 19 C 0.10 0.69 6.37 -3.49 -0.02 0.67 16 20 N -0.61 -6.76 2.97 -164.96 -0.49 -7.25 16 21 C 0.48 6.51 7.51 -10.99 -0.08 6.43 16 22 O -0.48 -8.87 9.35 5.55 0.05 -8.82 16 23 C 0.12 1.24 5.37 -5.19 -0.03 1.21 16 24 N -0.14 -1.98 3.44 -11.66 -0.04 -2.02 16 25 N -0.28 -4.09 12.05 30.67 0.37 -3.72 16 26 C -0.02 -0.28 12.20 -17.21 -0.21 -0.49 16 27 C -0.02 -0.29 12.20 -17.21 -0.21 -0.50 16 28 N -0.28 -3.97 12.05 30.67 0.37 -3.60 16 29 C 0.15 3.44 5.99 -3.07 -0.02 3.43 16 30 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 31 H 0.04 0.95 3.13 -51.93 -0.16 0.78 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.16 7.55 -51.93 -0.39 0.76 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.87 6.90 -51.93 -0.36 0.52 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.32 5.93 -51.92 -0.31 0.01 16 43 H 0.13 0.94 7.76 -51.93 -0.40 0.53 16 44 H 0.13 0.89 7.88 -51.93 -0.41 0.48 16 45 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 46 H 0.20 1.56 8.06 -52.49 -0.42 1.13 16 47 H 0.06 1.55 5.58 -52.25 -0.29 1.26 16 48 H 0.01 0.27 7.52 -51.93 -0.39 -0.12 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -39.73 364.31 -7.18 -46.91 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.23 Total: -1.69 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.75 Total: 0.87 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: 0.48 Total: -62.46 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.05 Total: -8.82 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -4.22 Total: 19.69 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.73 -7.18 -46.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039208060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.982 kcal (2) G-P(sol) polarization free energy of solvation -39.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds