Wall clock time and date at job start Tue Mar 31 2020 18:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99737 * 2 1 4 4 H 1.48498 * 109.47242 * 275.20771 * 3 2 1 5 5 H 1.48497 * 109.47088 * 35.21039 * 3 2 1 6 6 H 1.48497 * 109.46636 * 155.20734 * 3 2 1 7 7 C 1.38808 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99930 * 339.00102 * 7 2 1 9 9 N 1.36936 * 120.00255 * 158.99884 * 7 2 1 10 10 C 1.47431 * 125.64399 * 327.22520 * 9 7 2 11 11 C 1.54911 * 104.82895 * 155.83564 * 10 9 7 12 12 C 1.55158 * 101.57983 * 37.00977 * 11 10 9 13 13 H 1.08998 * 110.72227 * 83.03944 * 12 11 10 14 14 C 1.53003 * 110.71823 * 206.13421 * 12 11 10 15 15 H 1.09000 * 109.70055 * 74.92429 * 14 12 11 16 16 C 1.53195 * 109.58634 * 314.57317 * 14 12 11 17 17 C 1.53044 * 109.31352 * 185.57942 * 16 14 12 18 18 C 1.53042 * 109.53906 * 61.35996 * 17 16 14 19 19 C 1.53622 * 109.24097 * 298.51631 * 18 17 16 20 20 N 1.46919 * 108.54514 * 54.85590 * 19 18 17 21 21 C 1.34781 * 120.63028 * 126.36986 * 20 19 18 22 22 O 1.21284 * 119.99988 * 175.53057 * 21 20 19 23 23 C 1.50694 * 119.99987 * 355.52699 * 21 20 19 24 24 N 1.46505 * 109.47162 * 180.02562 * 23 21 20 25 25 N 1.28600 * 124.61987 * 269.69718 * 24 23 21 26 26 C 1.31375 * 108.71898 * 179.82933 * 25 24 23 27 27 C 1.39679 * 105.89896 * 0.41587 * 26 25 24 28 28 N 1.28601 * 124.61704 * 90.00016 * 24 23 21 29 29 C 1.47013 * 125.65166 * 147.18488 * 9 7 2 30 30 H 0.97005 * 120.00494 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.36961 * 37.00211 * 10 9 7 32 32 H 1.09004 * 110.45938 * 274.71998 * 10 9 7 33 33 H 1.09002 * 111.00680 * 278.93463 * 11 10 9 34 34 H 1.08994 * 111.00397 * 155.08221 * 11 10 9 35 35 H 1.08998 * 109.49835 * 305.52711 * 16 14 12 36 36 H 1.08994 * 109.49751 * 65.62541 * 16 14 12 37 37 H 1.08997 * 109.46262 * 181.38261 * 17 16 14 38 38 H 1.09000 * 109.45650 * 301.35776 * 17 16 14 39 39 H 1.09004 * 109.49349 * 58.58998 * 18 17 16 40 40 H 1.09001 * 109.49851 * 178.68777 * 18 17 16 41 41 H 1.08996 * 109.73976 * 295.10874 * 19 18 17 42 42 H 1.09007 * 109.66114 * 174.55287 * 19 18 17 43 43 H 1.08997 * 109.47556 * 60.00106 * 23 21 20 44 44 H 1.09001 * 109.47445 * 300.00340 * 23 21 20 45 45 H 1.07999 * 127.04804 * 180.16536 * 26 25 24 46 46 H 1.07998 * 127.04915 * 179.76754 * 27 26 25 47 47 H 1.09004 * 109.88223 * 61.67552 * 29 9 7 48 48 H 1.09004 * 109.87972 * 300.51295 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3876 2.1101 -1.3943 5 1 1.5069 2.6184 0.8072 6 1 3.5983 1.4109 0.5871 7 6 2.0103 -1.2021 -0.0005 8 1 1.5241 -2.1065 0.3342 9 7 3.3114 -1.2413 -0.4256 10 6 3.8975 -0.3912 -1.4778 11 6 5.4136 -0.3572 -1.1614 12 6 5.6600 -1.8053 -0.6619 13 1 5.8061 -2.4836 -1.5025 14 6 6.8605 -1.8541 0.2855 15 1 6.5813 -1.4393 1.2540 16 6 8.0159 -1.0415 -0.3074 17 6 9.2562 -1.2079 0.5738 18 6 9.6680 -2.6815 0.6049 19 6 8.5282 -3.5130 1.2128 20 7 7.2989 -3.2463 0.4537 21 6 6.5839 -4.2599 -0.0736 22 8 5.5292 -4.0338 -0.6281 23 6 7.0950 -5.6740 0.0258 24 7 6.1444 -6.5833 -0.6191 25 7 5.1640 -7.1606 -0.0196 26 6 4.5141 -7.8998 -0.8898 27 6 5.1867 -7.7420 -2.1038 28 7 6.1799 -6.9172 -1.8605 29 6 4.3554 -2.1375 0.0924 30 1 -0.4851 0.8400 0.0004 31 1 3.4777 0.6137 -1.4314 32 1 3.7249 -0.8286 -2.4612 33 1 5.6332 0.3689 -0.3786 34 1 5.9955 -0.1493 -2.0593 35 1 8.2339 -1.3996 -1.3135 36 1 7.7370 0.0113 -0.3479 37 1 10.0729 -0.6111 0.1677 38 1 9.0299 -0.8729 1.5860 39 1 9.8704 -3.0242 -0.4099 40 1 10.5649 -2.7959 1.2137 41 1 8.3823 -3.2309 2.2555 42 1 8.7738 -4.5732 1.1500 43 1 7.2054 -5.9476 1.0750 44 1 8.0619 -5.7468 -0.4723 45 1 3.6414 -8.5082 -0.7037 46 1 4.9405 -8.2032 -3.0488 47 1 4.0763 -3.1755 -0.0889 48 1 4.4917 -1.9693 1.1607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039208060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:01 Heat of formation + Delta-G solvation = 113.271170 kcal Electronic energy + Delta-G solvation = -30572.956465 eV Core-core repulsion = 26666.851862 eV Total energy + Delta-G solvation = -3906.104603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.45233 -41.92572 -39.14826 -38.36750 -35.33093 -34.56821 -33.83095 -33.35566 -33.11937 -30.84286 -29.79320 -29.07680 -26.71121 -25.46629 -24.35899 -23.79670 -23.11114 -22.48346 -21.58215 -21.09195 -20.42296 -19.15967 -18.52618 -18.33468 -17.56757 -17.05957 -16.77408 -16.56096 -16.16934 -15.77579 -15.39008 -15.34911 -15.28543 -15.04479 -14.83558 -14.47365 -14.45892 -14.18299 -14.02720 -13.74701 -13.41709 -13.27345 -13.06338 -12.88993 -12.56293 -12.51181 -12.29859 -12.11299 -11.91350 -11.77775 -11.63687 -11.61660 -11.47851 -11.41471 -11.28827 -11.27513 -10.77331 -10.60723 -9.96798 -9.58274 -8.81662 -8.28450 -5.62703 0.76191 1.22209 1.30311 1.31378 1.45221 1.46181 1.62685 1.99671 2.35626 2.94069 3.21502 3.31104 3.41906 3.67909 3.75270 3.87308 3.92260 4.00026 4.01879 4.10161 4.16288 4.18739 4.26993 4.33533 4.41682 4.57091 4.59965 4.61700 4.70178 4.73995 4.77221 4.90866 4.98313 5.05352 5.07249 5.12724 5.13558 5.20027 5.27208 5.31539 5.34624 5.48946 5.54285 5.63077 5.72864 5.77923 6.04898 6.33786 6.76413 7.15377 7.38551 7.47908 8.14799 8.93190 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.004729 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.763275 B = 5919.769535 C = 8115.548884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.029 4.029 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.300 1.300 6 H -0.256 1.256 7 C -0.249 4.249 8 H 0.029 0.971 9 N -0.629 5.629 10 C 0.112 3.888 11 C -0.122 4.122 12 C -0.071 4.071 13 H 0.088 0.912 14 C 0.163 3.837 15 H 0.065 0.935 16 C -0.123 4.123 17 C -0.119 4.119 18 C -0.129 4.129 19 C 0.094 3.906 20 N -0.599 5.599 21 C 0.478 3.522 22 O -0.540 6.540 23 C 0.122 3.878 24 N -0.153 5.153 25 N -0.314 5.314 26 C -0.031 4.031 27 C -0.028 4.028 28 N -0.307 5.307 29 C 0.153 3.847 30 H 0.266 0.734 31 H 0.028 0.972 32 H 0.018 0.982 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.160 0.840 44 H 0.168 0.832 45 H 0.224 0.776 46 H 0.229 0.771 47 H 0.033 0.967 48 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.651 -10.883 0.703 30.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.225 4.225 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.228 1.228 6 H -0.181 1.181 7 C -0.378 4.378 8 H 0.047 0.953 9 N -0.357 5.357 10 C -0.013 4.013 11 C -0.161 4.161 12 C -0.090 4.090 13 H 0.106 0.894 14 C 0.060 3.940 15 H 0.083 0.917 16 C -0.162 4.162 17 C -0.156 4.156 18 C -0.167 4.167 19 C -0.026 4.026 20 N -0.333 5.333 21 C 0.265 3.735 22 O -0.418 6.418 23 C -0.001 4.001 24 N -0.053 5.053 25 N -0.155 5.155 26 C -0.214 4.214 27 C -0.210 4.210 28 N -0.147 5.147 29 C 0.030 3.970 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.131 0.869 43 H 0.178 0.822 44 H 0.185 0.815 45 H 0.240 0.760 46 H 0.245 0.755 47 H 0.051 0.949 48 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 28.821 -9.841 1.091 30.475 hybrid contribution -1.756 0.150 -0.366 1.800 sum 27.065 -9.691 0.726 28.757 Atomic orbital electron populations 1.69990 1.07599 1.27712 1.54555 1.26052 0.95949 1.01550 0.98906 0.85533 0.79060 0.78856 0.77567 1.20058 1.22776 1.18053 1.18396 0.86435 0.93068 1.39924 0.95274 1.44859 1.06630 1.44140 1.40034 1.21988 0.94356 0.93469 0.91445 1.22944 0.93861 0.97257 1.02002 1.22324 0.92703 0.95113 0.98843 0.89383 1.21216 0.93611 0.81307 0.97909 0.91744 1.21969 0.94284 0.99929 0.99984 1.21547 0.96665 0.97491 0.99935 1.21995 0.97879 0.94366 1.02429 1.22322 0.82133 1.02455 0.95736 1.48099 1.26332 1.05002 1.53820 1.21093 0.84502 0.87734 0.80132 1.90904 1.23040 1.83660 1.44176 1.22098 0.91261 0.84133 1.02614 1.47627 1.21242 1.32772 1.03674 1.74009 1.01519 1.10790 1.29144 1.25364 1.03373 1.02262 0.90389 1.25374 0.93661 0.99816 1.02163 1.73955 1.24989 1.15486 1.00314 1.21856 0.88261 0.93241 0.93691 0.92512 0.95451 0.96388 0.90923 0.88149 0.91360 0.90305 0.90081 0.91530 0.91158 0.87876 0.89802 0.86896 0.82228 0.81466 0.75993 0.75490 0.94946 0.98300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.52 13.97 21.65 0.30 -64.22 16 2 C -0.03 -1.86 5.43 84.86 0.46 -1.40 16 3 Si 0.96 50.27 24.85 68.60 1.70 51.97 16 4 H -0.27 -13.59 6.81 99.48 0.68 -12.91 16 5 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 6 H -0.26 -12.63 7.09 99.48 0.70 -11.92 16 7 C -0.25 -16.44 10.49 84.03 0.88 -15.56 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 9 N -0.63 -35.49 2.98 -691.99 -2.06 -37.55 16 10 C 0.11 5.38 6.27 86.85 0.54 5.92 16 11 C -0.12 -4.34 5.11 31.99 0.16 -4.18 16 12 C -0.07 -2.54 1.92 -9.60 -0.02 -2.56 16 13 H 0.09 3.46 5.94 -2.89 -0.02 3.44 16 14 C 0.16 4.13 2.60 44.98 0.12 4.25 16 15 H 0.06 1.79 7.67 -2.39 -0.02 1.77 16 16 C -0.12 -2.19 4.74 30.67 0.15 -2.05 16 17 C -0.12 -1.30 5.88 30.62 0.18 -1.12 16 18 C -0.13 -0.90 6.10 30.82 0.19 -0.71 16 19 C 0.09 0.87 6.37 86.51 0.55 1.42 16 20 N -0.60 -12.16 2.97 -794.21 -2.36 -14.52 16 21 C 0.48 12.54 7.51 87.65 0.66 13.20 16 22 O -0.54 -20.93 9.35 -3.04 -0.03 -20.96 16 23 C 0.12 2.21 5.37 85.63 0.46 2.67 16 24 N -0.15 -4.11 3.44 -190.81 -0.66 -4.77 16 25 N -0.31 -9.27 12.05 -56.87 -0.69 -9.95 16 26 C -0.03 -0.76 12.20 85.11 1.04 0.28 16 27 C -0.03 -0.64 12.20 85.11 1.04 0.40 16 28 N -0.31 -8.43 12.05 -56.86 -0.69 -9.12 16 29 C 0.15 7.43 5.99 86.73 0.52 7.95 16 30 H 0.27 16.77 8.31 -92.70 -0.77 15.99 16 31 H 0.03 1.37 3.13 -2.39 -0.01 1.37 16 32 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 2.46 7.55 -2.39 -0.02 2.44 16 34 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.43 6.90 -2.39 -0.02 1.42 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 0.33 5.93 -2.38 -0.01 0.32 16 43 H 0.16 1.86 7.76 -2.39 -0.02 1.84 16 44 H 0.17 1.69 7.88 -2.39 -0.02 1.67 16 45 H 0.22 3.75 8.06 -2.91 -0.02 3.72 16 46 H 0.23 3.31 8.06 -2.91 -0.02 3.29 16 47 H 0.03 1.80 5.58 -7.69 -0.04 1.75 16 48 H 0.00 -0.05 7.52 -2.38 -0.02 -0.07 16 Total: -1.00 -94.61 364.31 3.36 -91.25 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.90 Total: 9.35 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 6.93 Total: 8.51 kcal Atomic # 7 Polarization: -133.99 SS G_CDS: -6.14 Total: -140.13 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.03 Total: -20.96 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 1.70 Total: 51.97 kcal Total: -94.61 3.36 -91.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039208060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.520 kcal (2) G-P(sol) polarization free energy of solvation -94.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds