Wall clock time and date at job start Tue Mar 31 2020 18:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99952 * 2 1 4 4 H 1.48504 * 109.47139 * 269.99850 * 3 2 1 5 5 H 1.48499 * 109.46966 * 29.99450 * 3 2 1 6 6 H 1.48498 * 109.47343 * 149.99768 * 3 2 1 7 7 C 1.38806 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99910 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.47722 * 120.00206 * 179.97438 * 9 7 2 11 11 C 1.52202 * 108.12044 * 277.88711 * 10 9 7 12 12 C 1.52569 * 112.59745 * 192.04223 * 11 10 9 13 13 H 1.10177 * 109.56087 * 171.45651 * 12 11 10 14 14 C 1.52505 * 111.19300 * 292.79302 * 12 11 10 15 15 C 1.51840 * 113.22499 * 69.20151 * 14 12 11 16 16 C 1.51880 * 114.22401 * 45.11078 * 15 14 12 17 17 C 1.52529 * 113.03828 * 314.47718 * 16 15 14 18 18 H 1.10184 * 109.60423 * 170.16700 * 17 16 15 19 19 C 1.52167 * 108.14353 * 155.00030 * 10 9 7 20 20 N 1.47260 * 108.52590 * 52.33955 * 12 11 10 21 21 C 1.34566 * 122.43569 * 119.46005 * 20 12 11 22 22 O 1.21279 * 120.00353 * 0.02562 * 21 20 12 23 23 C 1.50706 * 120.00139 * 180.02562 * 21 20 12 24 24 C 1.52997 * 109.47238 * 180.02562 * 23 21 20 25 25 N 1.46496 * 109.47294 * 179.97438 * 24 23 21 26 26 C 1.35309 * 125.87179 * 124.71057 * 25 24 23 27 27 C 1.35350 * 106.17993 * 179.90603 * 26 25 24 28 28 N 1.33775 * 106.49514 * 0.35633 * 27 26 25 29 29 N 1.28635 * 108.88613 * 359.77187 * 28 27 26 30 30 H 0.97004 * 120.00455 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99417 * 0.02562 * 9 7 2 32 32 H 1.08963 * 106.60589 * 36.42340 * 10 9 7 33 33 H 1.09672 * 109.13023 * 70.64687 * 11 10 9 34 34 H 1.09723 * 109.12568 * 313.44654 * 11 10 9 35 35 H 1.09771 * 109.07261 * 191.00467 * 14 12 11 36 36 H 1.09903 * 108.98382 * 307.57615 * 14 12 11 37 37 H 1.11042 * 107.39039 * 164.04627 * 15 14 12 38 38 H 1.08708 * 111.07486 * 278.57748 * 15 14 12 39 39 H 1.09814 * 109.20191 * 76.05028 * 16 15 14 40 40 H 1.09826 * 109.17383 * 192.95186 * 16 15 14 41 41 H 1.09683 * 109.09795 * 46.00664 * 19 10 9 42 42 H 1.09726 * 109.07201 * 288.96157 * 19 10 9 43 43 H 1.09001 * 109.46953 * 299.99727 * 23 21 20 44 44 H 1.09000 * 109.47318 * 59.99325 * 23 21 20 45 45 H 1.09001 * 109.46832 * 299.99686 * 24 23 21 46 46 H 1.09004 * 109.47261 * 59.99705 * 24 23 21 47 47 H 1.08000 * 126.91195 * 0.02562 * 26 25 24 48 48 H 1.07992 * 126.75594 * 180.12242 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0643 -3.6674 0.0005 11 6 2.4729 -3.9780 -1.4323 12 6 2.9819 -5.4065 -1.6002 13 1 3.1175 -5.6263 -2.6712 14 6 4.3018 -5.6115 -0.8641 15 6 4.1561 -5.5787 0.6469 16 6 2.9816 -6.3824 1.1773 17 6 1.6947 -6.1472 0.3930 18 1 0.9323 -6.8787 0.7057 19 6 1.1663 -4.7330 0.6116 20 7 1.9800 -6.3291 -1.0402 21 6 1.3697 -7.2698 -1.7840 22 8 1.6389 -7.3810 -2.9613 23 6 0.3516 -8.1852 -1.1542 24 6 -0.1853 -9.1539 -2.2097 25 7 -1.1745 -10.0442 -1.5973 26 6 -2.4471 -10.2256 -2.0199 27 6 -3.0003 -11.1266 -1.1748 28 7 -2.0541 -11.4422 -0.2835 29 7 -0.9843 -10.7841 -0.5613 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0002 32 1 2.9476 -3.5169 0.6205 33 1 3.2575 -3.2772 -1.7423 34 1 1.6113 -3.8222 -2.0936 35 1 4.7340 -6.5748 -1.1643 36 1 5.0093 -4.8298 -1.1744 37 1 5.0801 -6.0176 1.0790 38 1 4.1273 -4.5562 1.0148 39 1 3.2310 -7.4513 1.1443 40 1 2.8118 -6.1210 2.2304 41 1 0.1636 -4.6511 0.1747 42 1 1.0712 -4.5471 1.6888 43 1 0.8202 -8.7499 -0.3482 44 1 -0.4705 -7.5928 -0.7525 45 1 -0.6538 -8.5895 -3.0160 46 1 0.6370 -9.7464 -2.6110 47 1 -2.9247 -9.7489 -2.8632 48 1 -4.0086 -11.5118 -1.2106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039280898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:58 Heat of formation + Delta-G solvation = 74.364827 kcal Electronic energy + Delta-G solvation = -29526.575109 eV Core-core repulsion = 25618.783400 eV Total energy + Delta-G solvation = -3907.791709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.46864 -40.86603 -38.48817 -35.51220 -34.91120 -33.24925 -32.62575 -32.01676 -31.31947 -31.02130 -29.00770 -26.15449 -25.96493 -24.92800 -23.17814 -22.91688 -22.08756 -21.71443 -20.51848 -20.15982 -18.35465 -17.73861 -17.06198 -16.76625 -16.44690 -15.91861 -15.55792 -15.32543 -15.15374 -14.46758 -14.35264 -14.21331 -13.76364 -13.69651 -13.53491 -13.47283 -13.39281 -13.21267 -12.74209 -12.57423 -12.16953 -12.02397 -11.74472 -11.60762 -11.34512 -11.14379 -10.98011 -10.94201 -10.85284 -10.81064 -10.47681 -10.36674 -10.32872 -10.13157 -9.92843 -9.67357 -9.63127 -9.55912 -8.92903 -8.53268 -7.01314 -5.81127 -3.09903 1.34443 1.99959 2.35468 2.49847 2.94610 3.39465 3.44717 3.46399 4.04424 4.22331 4.27907 4.40118 4.53112 4.61046 4.75982 4.80343 4.86443 4.89861 4.97165 5.04397 5.09763 5.18256 5.23635 5.30514 5.36852 5.41959 5.49019 5.51885 5.63548 5.66444 5.84883 5.88758 5.90927 5.93534 6.03180 6.11624 6.17742 6.20129 6.25622 6.28715 6.45055 6.53381 6.57319 6.88681 7.04767 7.45679 7.63892 8.04681 8.26814 8.36305 9.48260 10.03428 10.40078 11.41490 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.002801 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.426024 B = 9992.636545 C =10791.659165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.178 3.822 11 C -0.137 4.137 12 C 0.145 3.855 13 H 0.093 0.907 14 C -0.119 4.119 15 C -0.117 4.117 16 C -0.121 4.121 17 C 0.141 3.859 18 H 0.087 0.913 19 C -0.129 4.129 20 N -0.591 5.591 21 C 0.528 3.472 22 O -0.552 6.552 23 C -0.155 4.155 24 C 0.132 3.868 25 N -0.290 5.290 26 C -0.046 4.046 27 C -0.055 4.055 28 N -0.274 5.274 29 N -0.086 5.086 30 H 0.255 0.745 31 H 0.381 0.619 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.116 0.884 46 H 0.109 0.891 47 H 0.191 0.809 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 -19.570 -2.224 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.069 3.931 11 C -0.177 4.177 12 C 0.042 3.958 13 H 0.111 0.889 14 C -0.157 4.157 15 C -0.154 4.154 16 C -0.159 4.159 17 C 0.038 3.962 18 H 0.105 0.895 19 C -0.168 4.168 20 N -0.323 5.323 21 C 0.315 3.685 22 O -0.431 6.431 23 C -0.195 4.195 24 C 0.011 3.989 25 N -0.084 5.084 26 C -0.197 4.197 27 C -0.212 4.212 28 N -0.140 5.140 29 N -0.066 5.066 30 H 0.065 0.935 31 H 0.215 0.785 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.134 0.866 46 H 0.127 0.873 47 H 0.208 0.792 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.688 -19.908 -1.750 20.056 hybrid contribution -0.708 1.544 -0.930 1.936 sum 0.980 -18.364 -2.679 18.584 Atomic orbital electron populations 1.69655 1.05104 1.25632 1.57760 1.24730 0.95494 0.97647 1.03118 0.86228 0.78662 0.84008 0.77515 1.21770 1.21805 1.20780 1.19202 0.90906 0.84094 1.42573 0.91270 1.42919 1.05621 0.99733 1.88978 1.20148 0.94421 0.85841 0.92668 1.22446 1.01767 0.92701 1.00829 1.21367 0.86692 0.89529 0.98235 0.88875 1.21561 0.96732 1.02067 0.95332 1.21183 0.97342 1.01703 0.95166 1.21599 0.94430 1.00173 0.99672 1.21431 0.96931 0.98033 0.79850 0.89472 1.21954 1.00083 0.92682 1.02066 1.48299 1.40752 1.32896 1.10324 1.19884 0.81627 0.80632 0.86363 1.90706 1.65285 1.71412 1.15712 1.21895 1.00002 0.97817 0.99832 1.21867 0.91175 0.90722 0.95147 1.47580 1.10762 1.29604 1.20429 1.23767 0.86019 1.04905 1.05058 1.23642 1.01612 1.00911 0.95048 1.75126 0.97035 1.19077 1.22713 1.78294 1.20490 1.05229 1.02595 0.93538 0.78534 0.92480 0.91200 0.92062 0.92561 0.90842 0.93035 0.90432 0.92235 0.90657 0.91879 0.90730 0.87127 0.87879 0.86568 0.87277 0.79175 0.79363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.90 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.27 9.84 -15.06 -0.15 -6.42 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 N -0.73 -17.26 5.09 -53.46 -0.27 -17.54 16 10 C 0.18 3.17 2.26 -68.09 -0.15 3.02 16 11 C -0.14 -2.30 4.92 -27.36 -0.13 -2.43 16 12 C 0.14 2.00 3.21 -67.99 -0.22 1.78 16 13 H 0.09 1.38 7.20 -51.26 -0.37 1.01 16 14 C -0.12 -1.40 5.43 -27.57 -0.15 -1.55 16 15 C -0.12 -1.30 4.92 -27.89 -0.14 -1.44 16 16 C -0.12 -1.24 5.45 -27.54 -0.15 -1.39 16 17 C 0.14 1.61 3.14 -67.99 -0.21 1.39 16 18 H 0.09 0.82 6.20 -51.25 -0.32 0.50 16 19 C -0.13 -1.87 4.91 -27.39 -0.13 -2.01 16 20 N -0.59 -7.42 2.51 -157.60 -0.40 -7.81 16 21 C 0.53 6.49 7.75 -11.08 -0.09 6.40 16 22 O -0.55 -8.31 15.53 5.56 0.09 -8.22 16 23 C -0.15 -1.41 4.23 -27.88 -0.12 -1.52 16 24 C 0.13 1.09 5.74 -4.05 -0.02 1.07 16 25 N -0.29 -2.76 3.44 -61.27 -0.21 -2.97 16 26 C -0.05 -0.36 11.57 -17.05 -0.20 -0.55 16 27 C -0.05 -0.49 12.05 -17.73 -0.21 -0.70 16 28 N -0.27 -3.42 12.41 30.23 0.38 -3.04 16 29 N -0.09 -1.05 12.91 60.35 0.78 -0.27 16 30 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.38 9.73 7.64 -40.82 -0.31 9.42 16 32 H 0.06 1.04 5.36 -51.95 -0.28 0.76 16 33 H 0.07 1.24 8.20 -51.55 -0.42 0.82 16 34 H 0.06 1.17 8.20 -51.52 -0.42 0.75 16 35 H 0.06 0.63 8.21 -51.49 -0.42 0.21 16 36 H 0.07 0.84 8.22 -51.42 -0.42 0.42 16 37 H 0.05 0.50 8.30 -50.75 -0.42 0.08 16 38 H 0.08 0.98 5.71 -52.09 -0.30 0.68 16 39 H 0.06 0.55 8.21 -51.47 -0.42 0.13 16 40 H 0.07 0.71 8.21 -51.46 -0.42 0.29 16 41 H 0.06 0.98 8.03 -51.54 -0.41 0.56 16 42 H 0.07 1.07 8.20 -51.52 -0.42 0.65 16 43 H 0.11 0.96 7.86 -51.93 -0.41 0.55 16 44 H 0.10 0.89 7.87 -51.93 -0.41 0.48 16 45 H 0.12 0.82 8.03 -51.93 -0.42 0.40 16 46 H 0.11 0.90 8.10 -51.93 -0.42 0.48 16 47 H 0.19 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -33.27 376.73 -7.85 -41.11 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.41 Total: 7.87 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.17 Total: -4.84 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 1.00 Total: -58.47 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.27 -7.85 -41.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039280898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.477 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds