Wall clock time and date at job start Tue Mar 31 2020 18:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99952 * 2 1 4 4 H 1.48504 * 109.47139 * 269.99850 * 3 2 1 5 5 H 1.48499 * 109.46966 * 29.99450 * 3 2 1 6 6 H 1.48498 * 109.47343 * 149.99768 * 3 2 1 7 7 C 1.38806 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99910 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.47722 * 120.00206 * 179.97438 * 9 7 2 11 11 C 1.52202 * 108.12044 * 277.88711 * 10 9 7 12 12 C 1.52569 * 112.59745 * 192.04223 * 11 10 9 13 13 H 1.10177 * 109.56087 * 171.45651 * 12 11 10 14 14 C 1.52505 * 111.19300 * 292.79302 * 12 11 10 15 15 C 1.51840 * 113.22499 * 69.20151 * 14 12 11 16 16 C 1.51880 * 114.22401 * 45.11078 * 15 14 12 17 17 C 1.52529 * 113.03828 * 314.47718 * 16 15 14 18 18 H 1.10184 * 109.60423 * 170.16700 * 17 16 15 19 19 C 1.52167 * 108.14353 * 155.00030 * 10 9 7 20 20 N 1.47260 * 108.52590 * 52.33955 * 12 11 10 21 21 C 1.34566 * 122.43569 * 119.46005 * 20 12 11 22 22 O 1.21279 * 120.00353 * 0.02562 * 21 20 12 23 23 C 1.50706 * 120.00139 * 180.02562 * 21 20 12 24 24 C 1.52997 * 109.47238 * 180.02562 * 23 21 20 25 25 N 1.46496 * 109.47294 * 179.97438 * 24 23 21 26 26 C 1.35309 * 125.87179 * 124.71057 * 25 24 23 27 27 C 1.35350 * 106.17993 * 179.90603 * 26 25 24 28 28 N 1.33775 * 106.49514 * 0.35633 * 27 26 25 29 29 N 1.28635 * 108.88613 * 359.77187 * 28 27 26 30 30 H 0.97004 * 120.00455 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99417 * 0.02562 * 9 7 2 32 32 H 1.08963 * 106.60589 * 36.42340 * 10 9 7 33 33 H 1.09672 * 109.13023 * 70.64687 * 11 10 9 34 34 H 1.09723 * 109.12568 * 313.44654 * 11 10 9 35 35 H 1.09771 * 109.07261 * 191.00467 * 14 12 11 36 36 H 1.09903 * 108.98382 * 307.57615 * 14 12 11 37 37 H 1.11042 * 107.39039 * 164.04627 * 15 14 12 38 38 H 1.08708 * 111.07486 * 278.57748 * 15 14 12 39 39 H 1.09814 * 109.20191 * 76.05028 * 16 15 14 40 40 H 1.09826 * 109.17383 * 192.95186 * 16 15 14 41 41 H 1.09683 * 109.09795 * 46.00664 * 19 10 9 42 42 H 1.09726 * 109.07201 * 288.96157 * 19 10 9 43 43 H 1.09001 * 109.46953 * 299.99727 * 23 21 20 44 44 H 1.09000 * 109.47318 * 59.99325 * 23 21 20 45 45 H 1.09001 * 109.46832 * 299.99686 * 24 23 21 46 46 H 1.09004 * 109.47261 * 59.99705 * 24 23 21 47 47 H 1.08000 * 126.91195 * 0.02562 * 26 25 24 48 48 H 1.07992 * 126.75594 * 180.12242 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0643 -3.6674 0.0005 11 6 2.4729 -3.9780 -1.4323 12 6 2.9819 -5.4065 -1.6002 13 1 3.1175 -5.6263 -2.6712 14 6 4.3018 -5.6115 -0.8641 15 6 4.1561 -5.5787 0.6469 16 6 2.9816 -6.3824 1.1773 17 6 1.6947 -6.1472 0.3930 18 1 0.9323 -6.8787 0.7057 19 6 1.1663 -4.7330 0.6116 20 7 1.9800 -6.3291 -1.0402 21 6 1.3697 -7.2698 -1.7840 22 8 1.6389 -7.3810 -2.9613 23 6 0.3516 -8.1852 -1.1542 24 6 -0.1853 -9.1539 -2.2097 25 7 -1.1745 -10.0442 -1.5973 26 6 -2.4471 -10.2256 -2.0199 27 6 -3.0003 -11.1266 -1.1748 28 7 -2.0541 -11.4422 -0.2835 29 7 -0.9843 -10.7841 -0.5613 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0002 32 1 2.9476 -3.5169 0.6205 33 1 3.2575 -3.2772 -1.7423 34 1 1.6113 -3.8222 -2.0936 35 1 4.7340 -6.5748 -1.1643 36 1 5.0093 -4.8298 -1.1744 37 1 5.0801 -6.0176 1.0790 38 1 4.1273 -4.5562 1.0148 39 1 3.2310 -7.4513 1.1443 40 1 2.8118 -6.1210 2.2304 41 1 0.1636 -4.6511 0.1747 42 1 1.0712 -4.5471 1.6888 43 1 0.8202 -8.7499 -0.3482 44 1 -0.4705 -7.5928 -0.7525 45 1 -0.6538 -8.5895 -3.0160 46 1 0.6370 -9.7464 -2.6110 47 1 -2.9247 -9.7489 -2.8632 48 1 -4.0086 -11.5118 -1.2106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039280898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:57 Heat of formation + Delta-G solvation = 52.697174 kcal Electronic energy + Delta-G solvation = -29527.514689 eV Core-core repulsion = 25618.783400 eV Total energy + Delta-G solvation = -3908.731289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.16535 -41.92600 -39.56330 -36.58044 -36.25325 -34.25380 -33.80632 -33.63842 -32.03697 -31.80752 -30.66454 -27.24552 -27.05507 -26.12111 -24.83367 -23.59570 -23.08855 -22.55018 -21.53061 -21.37515 -19.45674 -19.13863 -18.15025 -17.66497 -17.47347 -16.86703 -16.78844 -16.49731 -15.91953 -15.78383 -15.42941 -15.18834 -15.07008 -14.87705 -14.67562 -14.58863 -14.49298 -14.26629 -13.99602 -13.54954 -13.50992 -12.91522 -12.84245 -12.78536 -12.66856 -12.47553 -12.43128 -12.20545 -11.94076 -11.91822 -11.85635 -11.82366 -11.55866 -11.37187 -11.12156 -10.98662 -10.81258 -10.70952 -10.30355 -9.61409 -8.99577 -7.93158 -5.20575 0.67477 1.32414 1.46587 1.47433 1.52640 1.55551 1.66128 1.99705 2.55896 3.35862 3.37975 3.41456 3.60379 3.66019 3.74439 3.79283 3.90407 3.97657 4.03151 4.12032 4.20083 4.25673 4.30205 4.30794 4.35967 4.41148 4.46124 4.51902 4.62603 4.67580 4.74462 4.87948 4.92440 4.93681 5.02426 5.06736 5.08477 5.16833 5.26027 5.30994 5.33882 5.43686 5.52741 5.59392 5.64974 5.67785 6.28473 6.46072 7.05611 7.35056 7.54627 8.09709 8.34127 9.30410 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.002801 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.426024 B = 9992.636545 C =10791.659165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.966 3.034 4 H -0.291 1.291 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.229 4.229 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.179 3.821 11 C -0.124 4.124 12 C 0.151 3.849 13 H 0.082 0.918 14 C -0.115 4.115 15 C -0.119 4.119 16 C -0.120 4.120 17 C 0.147 3.853 18 H 0.116 0.884 19 C -0.123 4.123 20 N -0.594 5.594 21 C 0.527 3.473 22 O -0.581 6.581 23 C -0.144 4.144 24 C 0.134 3.866 25 N -0.290 5.290 26 C -0.036 4.036 27 C -0.064 4.064 28 N -0.311 5.311 29 N -0.121 5.121 30 H 0.249 0.751 31 H 0.368 0.632 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.111 0.889 45 H 0.130 0.870 46 H 0.108 0.892 47 H 0.229 0.771 48 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.930 -21.176 -1.886 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.796 3.204 4 H -0.219 1.219 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.384 5.384 10 C 0.072 3.928 11 C -0.164 4.164 12 C 0.047 3.953 13 H 0.100 0.900 14 C -0.153 4.153 15 C -0.156 4.156 16 C -0.158 4.158 17 C 0.043 3.957 18 H 0.134 0.866 19 C -0.162 4.162 20 N -0.325 5.325 21 C 0.316 3.684 22 O -0.462 6.462 23 C -0.184 4.184 24 C 0.013 3.987 25 N -0.084 5.084 26 C -0.187 4.187 27 C -0.222 4.222 28 N -0.177 5.177 29 N -0.100 5.100 30 H 0.057 0.943 31 H 0.199 0.801 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.138 0.862 44 H 0.130 0.870 45 H 0.148 0.852 46 H 0.126 0.874 47 H 0.246 0.754 48 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.274 -21.562 -1.389 21.726 hybrid contribution -0.883 1.992 -1.110 2.445 sum 1.391 -19.571 -2.499 19.779 Atomic orbital electron populations 1.69808 1.06539 1.25769 1.60128 1.25489 0.96297 1.00871 1.04408 0.85240 0.77886 0.80070 0.77214 1.21900 1.22482 1.19257 1.19576 0.91322 0.85201 1.40015 0.90680 1.43190 1.05249 1.01151 1.88855 1.20385 0.94513 0.84653 0.93250 1.22235 0.99989 0.94908 0.99313 1.21143 0.88186 0.87655 0.98271 0.90013 1.21524 0.95225 1.02772 0.95781 1.21179 0.98958 1.01052 0.94449 1.21622 0.93047 1.01225 0.99950 1.21512 0.98551 0.96301 0.79299 0.86588 1.21873 0.98701 0.93785 1.01815 1.48356 1.40514 1.32706 1.10908 1.20392 0.81510 0.80568 0.85922 1.90695 1.66182 1.72256 1.17104 1.21815 0.99190 0.97355 1.00046 1.21901 0.91288 0.90464 0.95018 1.47683 1.11527 1.29171 1.19978 1.24428 0.85084 1.03894 1.05283 1.24232 1.02387 1.01076 0.94499 1.75071 0.98055 1.20167 1.24382 1.78241 1.20954 1.06651 1.04138 0.94264 0.80051 0.92313 0.92745 0.95111 0.91267 0.90830 0.90975 0.92222 0.90229 0.89347 0.93160 0.90245 0.86164 0.87048 0.85158 0.87382 0.75429 0.76650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.82 13.06 21.65 0.28 -58.53 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 3 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.23 -12.28 9.84 84.03 0.83 -11.45 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -35.87 5.09 -323.03 -1.64 -37.51 16 10 C 0.18 6.38 2.26 44.22 0.10 6.48 16 11 C -0.12 -4.25 4.92 30.19 0.15 -4.10 16 12 C 0.15 4.09 3.21 44.54 0.14 4.23 16 13 H 0.08 2.42 7.20 -1.76 -0.01 2.41 16 14 C -0.11 -2.52 5.43 30.05 0.16 -2.35 16 15 C -0.12 -2.36 4.92 29.84 0.15 -2.21 16 16 C -0.12 -2.07 5.45 30.07 0.16 -1.91 16 17 C 0.15 2.98 3.14 44.54 0.14 3.12 16 18 H 0.12 1.78 6.20 -1.75 -0.01 1.77 16 19 C -0.12 -3.45 4.91 30.17 0.15 -3.31 16 20 N -0.59 -13.96 2.51 -771.03 -1.93 -15.90 16 21 C 0.53 12.09 7.75 87.69 0.68 12.77 16 22 O -0.58 -16.92 15.53 -3.02 -0.05 -16.97 16 23 C -0.14 -2.27 4.23 29.85 0.13 -2.15 16 24 C 0.13 1.93 5.74 86.38 0.50 2.42 16 25 N -0.29 -4.91 3.44 -347.74 -1.20 -6.11 16 26 C -0.04 -0.45 11.57 83.49 0.97 0.52 16 27 C -0.06 -1.01 12.05 83.73 1.01 0.00 16 28 N -0.31 -7.46 12.41 -58.26 -0.72 -8.18 16 29 N -0.12 -2.80 12.91 37.02 0.48 -2.32 16 30 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 31 H 0.37 19.39 7.64 -92.71 -0.71 18.68 16 32 H 0.06 2.12 5.36 -2.41 -0.01 2.10 16 33 H 0.05 1.99 8.20 -2.03 -0.02 1.97 16 34 H 0.03 1.22 8.20 -2.00 -0.02 1.20 16 35 H 0.07 1.38 8.21 -1.98 -0.02 1.36 16 36 H 0.07 1.60 8.22 -1.90 -0.02 1.58 16 37 H 0.07 1.17 8.30 -1.28 -0.01 1.16 16 38 H 0.06 1.40 5.71 -2.54 -0.01 1.39 16 39 H 0.08 1.13 8.21 -1.95 -0.02 1.12 16 40 H 0.09 1.35 8.21 -1.95 -0.02 1.34 16 41 H 0.05 1.54 8.03 -2.02 -0.02 1.53 16 42 H 0.08 2.17 8.20 -2.00 -0.02 2.15 16 43 H 0.12 1.73 7.86 -2.39 -0.02 1.71 16 44 H 0.11 1.63 7.87 -2.39 -0.02 1.61 16 45 H 0.13 1.51 8.03 -2.39 -0.02 1.49 16 46 H 0.11 1.61 8.10 -2.38 -0.02 1.59 16 47 H 0.23 0.88 8.06 -2.91 -0.02 0.86 16 48 H 0.22 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -74.20 376.73 3.27 -70.92 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.30 Total: 28.92 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.72 Total: -1.93 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -4.74 Total: -128.56 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.05 Total: -16.97 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -74.20 3.27 -70.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039280898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.622 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds