Wall clock time and date at job start Tue Mar 31 2020 18:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99833 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99797 * 3 2 1 5 5 H 1.48506 * 109.46954 * 29.99813 * 3 2 1 6 6 H 1.48502 * 109.46788 * 149.99835 * 3 2 1 7 7 C 1.38807 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00366 * 197.11630 * 7 2 1 9 9 N 1.36942 * 120.00180 * 16.84789 * 7 2 1 10 10 C 1.46928 * 120.67512 * 207.37492 * 9 7 2 11 11 C 1.52759 * 109.07977 * 234.05146 * 10 9 7 12 12 C 1.53119 * 109.36403 * 305.07921 * 11 10 9 13 13 C 1.52481 * 109.65229 * 60.36940 * 12 11 10 14 14 C 1.53848 * 110.21392 * 178.08746 * 13 12 11 15 15 C 1.54503 * 104.79043 * 240.96273 * 14 13 12 16 16 N 1.48186 * 104.63672 * 23.80000 * 15 14 13 17 17 C 1.34771 * 127.80330 * 140.73834 * 16 15 14 18 18 O 1.21283 * 119.99687 * 179.97438 * 17 16 15 19 19 C 1.50692 * 120.00384 * 359.96987 * 17 16 15 20 20 C 1.52997 * 109.47599 * 180.02562 * 19 17 16 21 21 C 1.50699 * 109.47440 * 179.97438 * 20 19 17 22 22 C 1.35352 * 126.90795 * 85.00193 * 21 20 19 23 23 N 1.33769 * 106.49604 * 179.97438 * 22 21 20 24 24 N 1.28636 * 108.88615 * 359.97438 * 23 22 21 25 25 N 1.28712 * 110.17402 * 359.75691 * 24 23 22 26 26 H 0.97003 * 125.86253 * 180.23618 * 25 24 23 27 27 C 1.48259 * 104.39100 * 320.69736 * 16 15 14 28 28 C 1.47023 * 120.67532 * 27.65178 * 9 7 2 29 29 H 0.96996 * 120.00432 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.57411 * 353.90345 * 10 9 7 31 31 H 1.08998 * 109.57676 * 114.28975 * 10 9 7 32 32 H 1.08999 * 109.56491 * 185.05383 * 11 10 9 33 33 H 1.08998 * 109.36382 * 64.99065 * 11 10 9 34 34 H 1.09001 * 109.44169 * 300.31187 * 12 11 10 35 35 H 1.08998 * 109.43568 * 180.42151 * 12 11 10 36 36 H 1.08994 * 110.37119 * 359.78714 * 14 13 12 37 37 H 1.08993 * 110.37402 * 122.02288 * 14 13 12 38 38 H 1.09008 * 110.40254 * 142.58550 * 15 14 13 39 39 H 1.08999 * 110.40401 * 265.00584 * 15 14 13 40 40 H 1.09003 * 109.47245 * 300.00421 * 19 17 16 41 41 H 1.09002 * 109.46861 * 60.00060 * 19 17 16 42 42 H 1.09003 * 109.47158 * 300.00465 * 20 19 17 43 43 H 1.09002 * 109.46973 * 60.00118 * 20 19 17 44 44 H 1.08001 * 126.75376 * 359.97438 * 22 21 20 45 45 H 1.09001 * 110.42885 * 280.39469 * 27 16 15 46 46 H 1.09002 * 110.42515 * 157.91605 * 27 16 15 47 47 H 1.09002 * 109.57285 * 247.05972 * 28 9 7 48 48 H 1.09002 * 109.57179 * 7.43269 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0544 -1.2228 0.2758 9 7 1.3697 -2.3628 -0.3427 10 6 1.8242 -3.6551 0.1885 11 6 2.0781 -4.6118 -0.9750 12 6 0.8172 -4.7068 -1.8386 13 6 0.4692 -3.3290 -2.3913 14 6 -0.7690 -3.4180 -3.3001 15 6 -0.2759 -2.9456 -4.6860 16 7 1.1854 -3.1914 -4.6673 17 6 1.9586 -3.6510 -5.6708 18 8 3.1499 -3.8000 -5.4990 19 6 1.3431 -3.9799 -7.0064 20 6 2.4306 -4.4780 -7.9604 21 6 1.8149 -4.8075 -9.2959 22 6 1.5722 -3.9483 -10.3132 23 7 1.0220 -4.6695 -11.2964 24 7 0.9306 -5.8941 -10.9135 25 7 1.3995 -6.0228 -9.7217 26 1 1.4447 -6.8486 -9.2149 27 6 1.6046 -2.8166 -3.2955 28 6 0.2169 -2.3418 -1.2549 29 1 -0.4850 0.8400 -0.0004 30 1 2.7467 -3.5143 0.7517 31 1 1.0565 -4.0725 0.8400 32 1 2.3290 -5.5992 -0.5876 33 1 2.9047 -4.2361 -1.5780 34 1 -0.0108 -5.0744 -1.2324 35 1 0.9947 -5.3950 -2.6650 36 1 -1.1263 -4.4463 -3.3548 37 1 -1.5578 -2.7620 -2.9321 38 1 -0.7491 -3.5280 -5.4766 39 1 -0.4809 -1.8835 -4.8205 40 1 0.5894 -4.7567 -6.8778 41 1 0.8768 -3.0863 -7.4214 42 1 3.1846 -3.7015 -8.0892 43 1 2.8965 -5.3717 -7.5453 44 1 1.7816 -2.8889 -10.3282 45 1 1.7004 -1.7342 -3.2093 46 1 2.5449 -3.3043 -3.0384 47 1 -0.6832 -2.6313 -0.7127 48 1 0.0926 -1.3388 -1.6633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040401764.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:44 Heat of formation + Delta-G solvation = 76.055200 kcal Electronic energy + Delta-G solvation = -29335.430736 eV Core-core repulsion = 25427.712327 eV Total energy + Delta-G solvation = -3907.718409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.62743 -40.23004 -38.52979 -35.88258 -34.71956 -33.48073 -33.11760 -31.65813 -30.23159 -30.06149 -28.87404 -26.54390 -25.37251 -24.37913 -23.29342 -23.15044 -22.24311 -21.87187 -20.46067 -19.08355 -18.59213 -18.12991 -17.06014 -16.79890 -16.40933 -16.01566 -15.35819 -15.05491 -14.77897 -14.52968 -14.24152 -14.03730 -13.86086 -13.57647 -13.19295 -13.03682 -12.88692 -12.67731 -12.50946 -12.29614 -12.03306 -11.89868 -11.70818 -11.53085 -11.14690 -11.11597 -11.05570 -10.91404 -10.90564 -10.75409 -10.43845 -10.33704 -10.17630 -9.86799 -9.81856 -9.57028 -9.46781 -9.42827 -8.55980 -8.48329 -6.72794 -5.84840 -3.26026 1.19260 2.22305 2.38421 2.66902 3.07579 3.34447 3.42257 3.43248 4.04957 4.30383 4.44866 4.52802 4.61043 4.69371 4.84307 4.90049 5.03592 5.05992 5.13645 5.18476 5.35069 5.44841 5.49487 5.57344 5.59242 5.61200 5.62215 5.74783 5.81170 6.02151 6.05336 6.07776 6.13646 6.22037 6.29150 6.36104 6.45402 6.47105 6.62620 6.70717 6.77929 6.86965 6.98068 7.23267 7.53174 7.72286 7.75569 8.11166 8.21455 8.38470 9.15801 9.78775 10.35634 11.23907 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.002693 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.441097 B =10393.277025 C =10979.416528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.139 4.139 12 C -0.091 4.091 13 C -0.094 4.094 14 C -0.125 4.125 15 C 0.101 3.899 16 N -0.621 5.621 17 C 0.530 3.470 18 O -0.547 6.547 19 C -0.132 4.132 20 C -0.033 4.033 21 C -0.004 4.004 22 C -0.046 4.046 23 N -0.266 5.266 24 N -0.085 5.085 25 N -0.390 5.390 26 H 0.448 0.552 27 C 0.126 3.874 28 C 0.188 3.812 29 H 0.254 0.746 30 H 0.052 0.948 31 H 0.017 0.983 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.192 0.808 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.022 0.978 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.077 -10.509 -13.623 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.018 3.982 11 C -0.178 4.178 12 C -0.129 4.129 13 C -0.097 4.097 14 C -0.164 4.164 15 C -0.022 4.022 16 N -0.354 5.354 17 C 0.318 3.682 18 O -0.426 6.426 19 C -0.173 4.173 20 C -0.073 4.073 21 C -0.138 4.138 22 C -0.203 4.203 23 N -0.133 5.133 24 N -0.065 5.065 25 N -0.111 5.111 26 H 0.293 0.707 27 C 0.005 3.995 28 C 0.061 3.939 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.106 0.894 44 H 0.209 0.791 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.040 0.960 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.128 -11.069 -14.888 18.586 hybrid contribution 0.729 0.902 1.303 1.744 sum -0.399 -10.167 -13.585 16.973 Atomic orbital electron populations 1.70015 1.05161 1.25485 1.54204 1.24999 0.95282 0.98292 1.01000 0.86326 0.79204 0.83755 0.77750 1.21433 1.21778 1.20431 1.19200 0.92629 0.84650 1.41348 0.91625 1.44054 1.35077 1.01483 1.50763 1.20821 0.97504 0.86907 0.92922 1.22038 0.97639 0.99021 0.99093 1.21322 0.98008 0.95445 0.98101 1.21860 0.93202 0.97728 0.96890 1.22546 0.98552 1.01495 0.93773 1.22456 0.80280 1.01027 0.98475 1.49213 1.09211 1.63644 1.13318 1.19987 0.86312 0.77124 0.84747 1.90719 1.14968 1.54201 1.82676 1.21622 0.99098 1.03634 0.92932 1.19896 0.96918 1.03957 0.86544 1.22367 1.05626 0.85729 1.00106 1.23478 1.04721 1.01816 0.90313 1.75112 1.15851 0.97024 1.25344 1.78301 1.17593 1.14929 0.95668 1.45159 1.41802 1.10876 1.13230 0.70687 1.22472 0.98629 1.00544 0.77819 1.20792 0.88798 0.97124 0.87145 0.93643 0.92906 0.96554 0.93176 0.92098 0.92569 0.93865 0.91585 0.89852 0.91064 0.90763 0.89148 0.88275 0.87648 0.89442 0.79107 0.90424 0.89933 0.95986 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 11.17 55.49 0.62 -24.18 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -6.49 9.59 -15.06 -0.14 -6.63 16 8 H 0.07 1.72 7.88 -52.48 -0.41 1.30 16 9 N -0.59 -13.83 2.83 -172.85 -0.49 -14.32 16 10 C 0.14 2.91 6.47 -3.93 -0.03 2.88 16 11 C -0.14 -2.35 5.86 -26.79 -0.16 -2.50 16 12 C -0.09 -1.44 4.48 -26.94 -0.12 -1.56 16 13 C -0.09 -1.56 0.68 -154.04 -0.11 -1.66 16 14 C -0.12 -1.63 6.29 -25.50 -0.16 -1.79 16 15 C 0.10 1.15 6.92 -2.33 -0.02 1.13 16 16 N -0.62 -8.65 3.32 -169.40 -0.56 -9.21 16 17 C 0.53 7.01 7.91 -10.99 -0.09 6.92 16 18 O -0.55 -9.27 16.25 5.55 0.09 -9.18 16 19 C -0.13 -1.09 4.66 -27.89 -0.13 -1.22 16 20 C -0.03 -0.25 5.07 -27.89 -0.14 -0.39 16 21 C 0.00 -0.03 6.56 -82.09 -0.54 -0.57 16 22 C -0.05 -0.41 11.99 -17.74 -0.21 -0.63 16 23 N -0.27 -3.12 12.41 30.23 0.38 -2.75 16 24 N -0.08 -0.92 13.38 60.35 0.81 -0.11 16 25 N -0.39 -2.91 6.98 33.54 0.23 -2.68 16 26 H 0.45 1.78 8.96 -190.40 -1.71 0.07 16 27 C 0.13 2.19 5.79 -2.59 -0.02 2.18 16 28 C 0.19 4.01 3.66 -3.95 -0.01 4.00 16 29 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.10 6.21 -51.93 -0.32 0.78 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.77 7.70 -51.93 -0.40 0.37 16 37 H 0.08 1.11 7.69 -51.93 -0.40 0.71 16 38 H 0.07 0.60 7.31 -51.92 -0.38 0.22 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.62 7.95 -51.93 -0.41 0.20 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.11 0.83 8.10 -51.93 -0.42 0.41 16 43 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 44 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.08 1.54 7.73 -51.93 -0.40 1.14 16 46 H 0.08 1.58 5.63 -51.93 -0.29 1.29 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.09 2.18 5.90 -51.93 -0.31 1.87 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -32.32 378.59 -9.01 -41.32 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.80 Total: -0.77 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.95 Total: 0.14 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.98 Total: -53.24 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.32 -9.01 -41.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040401764.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.380 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds