Wall clock time and date at job start Tue Mar 31 2020 18:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99833 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99797 * 3 2 1 5 5 H 1.48506 * 109.46954 * 29.99813 * 3 2 1 6 6 H 1.48502 * 109.46788 * 149.99835 * 3 2 1 7 7 C 1.38807 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00366 * 197.11630 * 7 2 1 9 9 N 1.36942 * 120.00180 * 16.84789 * 7 2 1 10 10 C 1.46928 * 120.67512 * 207.37492 * 9 7 2 11 11 C 1.52759 * 109.07977 * 234.05146 * 10 9 7 12 12 C 1.53119 * 109.36403 * 305.07921 * 11 10 9 13 13 C 1.52481 * 109.65229 * 60.36940 * 12 11 10 14 14 C 1.53848 * 110.21392 * 178.08746 * 13 12 11 15 15 C 1.54503 * 104.79043 * 240.96273 * 14 13 12 16 16 N 1.48186 * 104.63672 * 23.80000 * 15 14 13 17 17 C 1.34771 * 127.80330 * 140.73834 * 16 15 14 18 18 O 1.21283 * 119.99687 * 179.97438 * 17 16 15 19 19 C 1.50692 * 120.00384 * 359.96987 * 17 16 15 20 20 C 1.52997 * 109.47599 * 180.02562 * 19 17 16 21 21 C 1.50699 * 109.47440 * 179.97438 * 20 19 17 22 22 C 1.35352 * 126.90795 * 85.00193 * 21 20 19 23 23 N 1.33769 * 106.49604 * 179.97438 * 22 21 20 24 24 N 1.28636 * 108.88615 * 359.97438 * 23 22 21 25 25 N 1.28712 * 110.17402 * 359.75691 * 24 23 22 26 26 H 0.97003 * 125.86253 * 180.23618 * 25 24 23 27 27 C 1.48259 * 104.39100 * 320.69736 * 16 15 14 28 28 C 1.47023 * 120.67532 * 27.65178 * 9 7 2 29 29 H 0.96996 * 120.00432 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.57411 * 353.90345 * 10 9 7 31 31 H 1.08998 * 109.57676 * 114.28975 * 10 9 7 32 32 H 1.08999 * 109.56491 * 185.05383 * 11 10 9 33 33 H 1.08998 * 109.36382 * 64.99065 * 11 10 9 34 34 H 1.09001 * 109.44169 * 300.31187 * 12 11 10 35 35 H 1.08998 * 109.43568 * 180.42151 * 12 11 10 36 36 H 1.08994 * 110.37119 * 359.78714 * 14 13 12 37 37 H 1.08993 * 110.37402 * 122.02288 * 14 13 12 38 38 H 1.09008 * 110.40254 * 142.58550 * 15 14 13 39 39 H 1.08999 * 110.40401 * 265.00584 * 15 14 13 40 40 H 1.09003 * 109.47245 * 300.00421 * 19 17 16 41 41 H 1.09002 * 109.46861 * 60.00060 * 19 17 16 42 42 H 1.09003 * 109.47158 * 300.00465 * 20 19 17 43 43 H 1.09002 * 109.46973 * 60.00118 * 20 19 17 44 44 H 1.08001 * 126.75376 * 359.97438 * 22 21 20 45 45 H 1.09001 * 110.42885 * 280.39469 * 27 16 15 46 46 H 1.09002 * 110.42515 * 157.91605 * 27 16 15 47 47 H 1.09002 * 109.57285 * 247.05972 * 28 9 7 48 48 H 1.09002 * 109.57179 * 7.43269 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0544 -1.2228 0.2758 9 7 1.3697 -2.3628 -0.3427 10 6 1.8242 -3.6551 0.1885 11 6 2.0781 -4.6118 -0.9750 12 6 0.8172 -4.7068 -1.8386 13 6 0.4692 -3.3290 -2.3913 14 6 -0.7690 -3.4180 -3.3001 15 6 -0.2759 -2.9456 -4.6860 16 7 1.1854 -3.1914 -4.6673 17 6 1.9586 -3.6510 -5.6708 18 8 3.1499 -3.8000 -5.4990 19 6 1.3431 -3.9799 -7.0064 20 6 2.4306 -4.4780 -7.9604 21 6 1.8149 -4.8075 -9.2959 22 6 1.5722 -3.9483 -10.3132 23 7 1.0220 -4.6695 -11.2964 24 7 0.9306 -5.8941 -10.9135 25 7 1.3995 -6.0228 -9.7217 26 1 1.4447 -6.8486 -9.2149 27 6 1.6046 -2.8166 -3.2955 28 6 0.2169 -2.3418 -1.2549 29 1 -0.4850 0.8400 -0.0004 30 1 2.7467 -3.5143 0.7517 31 1 1.0565 -4.0725 0.8400 32 1 2.3290 -5.5992 -0.5876 33 1 2.9047 -4.2361 -1.5780 34 1 -0.0108 -5.0744 -1.2324 35 1 0.9947 -5.3950 -2.6650 36 1 -1.1263 -4.4463 -3.3548 37 1 -1.5578 -2.7620 -2.9321 38 1 -0.7491 -3.5280 -5.4766 39 1 -0.4809 -1.8835 -4.8205 40 1 0.5894 -4.7567 -6.8778 41 1 0.8768 -3.0863 -7.4214 42 1 3.1846 -3.7015 -8.0892 43 1 2.8965 -5.3717 -7.5453 44 1 1.7816 -2.8889 -10.3282 45 1 1.7004 -1.7342 -3.2093 46 1 2.5449 -3.3043 -3.0384 47 1 -0.6832 -2.6313 -0.7127 48 1 0.0926 -1.3388 -1.6633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040401764.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:43 Heat of formation + Delta-G solvation = 54.813585 kcal Electronic energy + Delta-G solvation = -29336.351842 eV Core-core repulsion = 25427.712327 eV Total energy + Delta-G solvation = -3908.639514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.28983 -41.42392 -39.77724 -37.30426 -35.44907 -34.84292 -34.14250 -33.01081 -31.81294 -30.99303 -30.07824 -27.69254 -27.20159 -25.36024 -24.33160 -23.97351 -23.86077 -22.54315 -21.92060 -20.08195 -19.60746 -19.24266 -18.61477 -18.04774 -17.12715 -17.09294 -16.67911 -16.33433 -15.91531 -15.77093 -15.50352 -15.22230 -14.96093 -14.78781 -14.50251 -14.35548 -14.21723 -13.93936 -13.67797 -13.34715 -13.15944 -12.93628 -12.84350 -12.74232 -12.66377 -12.43278 -12.42608 -12.29955 -12.07942 -11.93088 -11.79921 -11.74404 -11.58777 -11.37350 -11.04850 -11.02475 -10.88203 -10.52250 -10.14954 -9.67866 -8.64472 -7.86499 -5.29375 0.55530 1.44757 1.47328 1.53092 1.54563 1.66152 1.83694 2.07883 2.50787 3.25710 3.33883 3.57737 3.68909 3.79196 3.86008 3.89916 3.92522 4.02478 4.13415 4.28184 4.29015 4.34988 4.36984 4.47644 4.54368 4.58329 4.64163 4.71134 4.79746 4.87276 4.93545 4.97591 5.00658 5.05150 5.10267 5.13768 5.18336 5.21355 5.28346 5.34100 5.37143 5.52123 5.62162 5.68332 5.79024 5.98958 6.40762 6.68436 7.17470 7.17680 7.43375 7.88577 8.39635 9.19410 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.002693 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.441097 B =10393.277025 C =10979.416528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.043 4.043 3 Si 0.955 3.045 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.256 4.256 8 H 0.058 0.942 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.129 4.129 12 C -0.085 4.085 13 C -0.087 4.087 14 C -0.121 4.121 15 C 0.104 3.896 16 N -0.621 5.621 17 C 0.526 3.474 18 O -0.590 6.590 19 C -0.120 4.120 20 C -0.025 4.025 21 C 0.010 3.990 22 C -0.053 4.053 23 N -0.303 5.303 24 N -0.110 5.110 25 N -0.373 5.373 26 H 0.462 0.538 27 C 0.136 3.864 28 C 0.199 3.801 29 H 0.250 0.750 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.212 0.788 45 H 0.040 0.960 46 H 0.060 0.940 47 H 0.001 0.999 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.688 -12.121 -15.170 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.239 4.239 3 Si 0.784 3.216 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.387 4.387 8 H 0.076 0.924 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.168 4.168 12 C -0.123 4.123 13 C -0.090 4.090 14 C -0.160 4.160 15 C -0.018 4.018 16 N -0.354 5.354 17 C 0.318 3.682 18 O -0.471 6.471 19 C -0.160 4.160 20 C -0.065 4.065 21 C -0.125 4.125 22 C -0.211 4.211 23 N -0.169 5.169 24 N -0.090 5.090 25 N -0.097 5.097 26 H 0.311 0.689 27 C 0.013 3.987 28 C 0.073 3.927 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.229 0.771 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.019 0.981 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.756 -12.731 -16.455 20.879 hybrid contribution 0.990 1.390 1.874 2.534 sum -0.766 -11.341 -14.582 18.489 Atomic orbital electron populations 1.70140 1.06168 1.25684 1.55518 1.25594 0.95989 1.00763 1.01532 0.85448 0.78197 0.80444 0.77482 1.21398 1.21979 1.19928 1.19399 0.92553 0.86077 1.40636 0.92403 1.44315 1.35375 1.01919 1.51666 1.20948 0.96971 0.86279 0.94293 1.21914 0.97926 0.99249 0.97716 1.21292 0.97464 0.94953 0.98578 1.21638 0.94932 0.96813 0.95604 1.22543 0.96538 1.03148 0.93723 1.22601 0.78612 1.01865 0.98750 1.49269 1.10444 1.63684 1.12018 1.20911 0.85774 0.75736 0.85825 1.90706 1.17056 1.55799 1.83513 1.21627 0.99414 1.05364 0.89572 1.19801 0.96579 1.04018 0.86059 1.22291 1.04928 0.85483 0.99758 1.23932 1.04225 1.02957 0.89988 1.75088 1.17305 0.97699 1.26816 1.78252 1.18881 1.14902 0.96957 1.45178 1.40439 1.11587 1.12472 0.68904 1.22017 0.98047 0.97998 0.80665 1.20572 0.87363 0.96799 0.87999 0.94067 0.93582 0.96577 0.90349 0.93561 0.91755 0.91703 0.88914 0.90421 0.86528 0.90938 0.86427 0.86307 0.88091 0.89096 0.77144 0.94172 0.92172 0.98145 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.69 11.17 21.65 0.24 -52.44 16 2 C -0.04 -2.34 4.92 84.86 0.42 -1.92 16 3 Si 0.96 44.41 29.59 68.60 2.03 46.44 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.26 -13.84 9.59 84.03 0.81 -13.03 16 8 H 0.06 3.14 7.88 -2.91 -0.02 3.11 16 9 N -0.61 -29.41 2.83 -700.76 -1.99 -31.39 16 10 C 0.14 5.70 6.47 86.22 0.56 6.25 16 11 C -0.13 -4.23 5.86 30.55 0.18 -4.05 16 12 C -0.09 -2.51 4.48 30.46 0.14 -2.37 16 13 C -0.09 -2.84 0.68 -51.88 -0.04 -2.87 16 14 C -0.12 -2.86 6.29 31.39 0.20 -2.66 16 15 C 0.10 2.02 6.92 86.57 0.60 2.62 16 16 N -0.62 -16.06 3.32 -808.24 -2.68 -18.75 16 17 C 0.53 12.62 7.91 87.66 0.69 13.31 16 18 O -0.59 -19.31 16.25 -3.04 -0.05 -19.36 16 19 C -0.12 -1.47 4.66 29.84 0.14 -1.33 16 20 C -0.02 -0.29 5.07 29.85 0.15 -0.14 16 21 C 0.01 0.13 6.56 41.36 0.27 0.40 16 22 C -0.05 -0.83 11.99 83.73 1.00 0.18 16 23 N -0.30 -6.64 12.41 -58.26 -0.72 -7.37 16 24 N -0.11 -2.19 13.38 37.02 0.50 -1.69 16 25 N -0.37 -4.56 6.98 -47.79 -0.33 -4.89 16 26 H 0.46 2.27 8.96 -219.96 -1.97 0.30 16 27 C 0.14 4.73 5.79 86.35 0.50 5.23 16 28 C 0.20 8.74 3.66 86.16 0.32 9.05 16 29 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 30 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 1.66 6.21 -2.39 -0.01 1.65 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.74 7.70 -2.39 -0.02 1.72 16 37 H 0.08 1.95 7.69 -2.39 -0.02 1.94 16 38 H 0.12 1.28 7.31 -2.38 -0.02 1.27 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.12 0.91 7.95 -2.39 -0.02 0.89 16 41 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.10 1.34 8.10 -2.39 -0.02 1.32 16 43 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 44 H 0.21 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.04 1.68 7.73 -2.39 -0.02 1.66 16 46 H 0.06 2.36 5.63 -2.39 -0.01 2.34 16 47 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.06 2.91 5.90 -2.39 -0.01 2.90 16 Total: -1.00 -74.02 378.59 1.93 -72.09 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -1.00 Total: 8.69 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.93 Total: 8.68 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -4.99 Total: -116.53 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -74.02 1.93 -72.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040401764.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.908 kcal (2) G-P(sol) polarization free energy of solvation -74.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds