Wall clock time and date at job start Tue Mar 31 2020 18:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00385 * 2 1 4 4 H 1.48502 * 109.46926 * 270.00024 * 3 2 1 5 5 H 1.48500 * 109.47020 * 30.00174 * 3 2 1 6 6 H 1.48506 * 109.47019 * 149.99845 * 3 2 1 7 7 C 1.38821 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00138 * 189.09458 * 7 2 1 9 9 N 1.36940 * 119.99357 * 9.09061 * 7 2 1 10 10 C 1.48172 * 127.80665 * 15.54178 * 9 7 2 11 11 C 1.54468 * 104.62444 * 140.62008 * 10 9 7 12 12 C 1.53995 * 104.81889 * 23.87430 * 11 10 9 13 13 C 1.48243 * 127.79680 * 195.50836 * 9 7 2 14 14 C 1.50730 * 110.88020 * 120.03800 * 12 11 10 15 15 C 1.52809 * 109.27996 * 213.00255 * 14 12 11 16 16 C 1.47074 * 114.31891 * 275.69351 * 15 14 12 17 17 C 1.54754 * 110.51808 * 62.91051 * 16 15 14 18 18 N 1.44543 * 109.61282 * 288.36152 * 17 16 15 19 19 C 1.34782 * 118.70467 * 270.61599 * 18 17 16 20 20 O 1.21278 * 119.99841 * 179.97438 * 19 18 17 21 21 C 1.50703 * 120.00135 * 359.97438 * 19 18 17 22 22 N 1.46499 * 109.46645 * 180.02562 * 21 19 18 23 23 N 1.28601 * 124.61650 * 269.69120 * 22 21 19 24 24 C 1.31381 * 108.71752 * 179.83560 * 23 22 21 25 25 C 1.39678 * 105.89752 * 0.41837 * 24 23 22 26 26 N 1.28595 * 124.61717 * 90.00670 * 22 21 19 27 27 C 1.47644 * 122.58998 * 90.89056 * 18 17 16 28 28 H 0.97004 * 119.99294 * 359.97438 * 1 2 3 29 29 H 1.08996 * 110.40768 * 21.83197 * 10 9 7 30 30 H 1.09001 * 110.40369 * 259.40785 * 10 9 7 31 31 H 1.08992 * 110.37248 * 265.04083 * 11 10 9 32 32 H 1.08997 * 110.36978 * 142.70754 * 11 10 9 33 33 H 1.09008 * 110.41241 * 100.43805 * 13 9 7 34 34 H 1.09000 * 110.42094 * 337.98701 * 13 9 7 35 35 H 1.09000 * 109.50320 * 93.06250 * 14 12 11 36 36 H 1.09001 * 109.53130 * 332.96067 * 14 12 11 37 37 H 1.09005 * 108.50856 * 154.44367 * 15 14 12 38 38 H 1.08996 * 108.51535 * 36.95299 * 15 14 12 39 39 H 1.08997 * 109.26695 * 302.63754 * 16 15 14 40 40 H 1.09000 * 109.26402 * 183.18252 * 16 15 14 41 41 H 1.09008 * 109.44388 * 168.31685 * 17 16 15 42 42 H 1.08993 * 109.42619 * 48.39183 * 17 16 15 43 43 H 1.08997 * 109.46844 * 60.00373 * 21 19 18 44 44 H 1.08999 * 109.46935 * 299.99797 * 21 19 18 45 45 H 1.07993 * 127.05596 * 180.16469 * 24 23 22 46 46 H 1.08007 * 127.05033 * 179.77139 * 25 24 23 47 47 H 1.09003 * 108.96365 * 78.40506 * 27 18 17 48 48 H 1.08999 * 108.97300 * 197.09192 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0800 -1.2081 0.1484 9 7 1.3383 -2.3807 -0.1863 10 6 -0.0350 -2.5702 -0.7093 11 6 0.0604 -3.8199 -1.6122 12 6 1.2794 -4.5970 -1.0815 13 6 1.8210 -3.7552 0.0884 14 6 0.8786 -5.9743 -0.6185 15 6 1.7575 -6.3855 0.5619 16 6 3.0506 -6.9721 0.1787 17 6 3.9088 -5.9386 -0.5897 18 7 3.3508 -5.7278 -1.9063 19 6 3.7642 -6.5161 -2.9184 20 8 3.3112 -6.3599 -4.0325 21 6 4.7893 -7.5915 -2.6656 22 7 5.0685 -8.3032 -3.9153 23 7 4.4368 -9.3486 -4.3175 24 6 4.9375 -9.7256 -5.4722 25 6 5.9599 -8.8186 -5.7602 26 7 5.9826 -7.9710 -4.7566 27 6 2.3503 -4.6791 -2.1874 28 1 -0.4849 0.8401 0.0004 29 1 -0.3426 -1.7024 -1.2928 30 1 -0.7328 -2.7453 0.1096 31 1 0.2197 -3.5270 -2.6499 32 1 -0.8428 -4.4232 -1.5217 33 1 1.4194 -4.1170 1.0350 34 1 2.9106 -3.7800 0.1023 35 1 1.0094 -6.6849 -1.4346 36 1 -0.1663 -5.9647 -0.3083 37 1 1.2118 -7.1130 1.1628 38 1 1.9453 -5.5053 1.1768 39 1 2.8774 -7.8400 -0.4575 40 1 3.5834 -7.2857 1.0765 41 1 4.9287 -6.3117 -0.6831 42 1 3.9160 -4.9956 -0.0433 43 1 4.4047 -8.2932 -1.9255 44 1 5.7077 -7.1376 -2.2933 45 1 4.6255 -10.5668 -6.0732 46 1 6.6004 -8.8147 -6.6299 47 1 2.8576 -3.7175 -2.2662 48 1 1.8630 -4.8996 -3.1371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045940608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:42 Heat of formation + Delta-G solvation = 125.813480 kcal Electronic energy + Delta-G solvation = -30209.017057 eV Core-core repulsion = 26303.456329 eV Total energy + Delta-G solvation = -3905.560728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.66071 -40.78754 -38.70758 -36.20079 -34.03892 -33.79835 -32.93597 -32.52400 -30.78550 -29.06523 -28.49098 -26.96590 -25.79685 -25.09393 -23.22891 -23.01119 -22.15986 -21.40344 -20.06348 -19.35923 -18.25587 -17.89908 -17.37554 -16.92356 -16.10295 -16.02291 -15.86339 -15.20122 -14.86194 -14.68525 -14.48787 -14.36757 -14.03782 -13.75048 -13.64990 -13.24217 -12.95307 -12.76333 -12.37931 -12.18198 -11.76563 -11.67935 -11.66253 -11.32037 -11.00454 -10.92557 -10.91401 -10.82042 -10.70290 -10.55811 -10.43212 -10.25861 -10.09303 -10.02986 -9.73015 -9.66326 -9.62062 -9.34575 -8.65319 -8.62609 -6.85542 -5.80504 -3.15080 1.61098 2.00925 2.36050 2.39015 2.97584 3.36401 3.41862 3.43502 3.98655 4.11203 4.44369 4.53265 4.62763 4.69814 4.79486 4.85421 4.93085 5.01495 5.19370 5.21939 5.29136 5.43717 5.45866 5.56132 5.65244 5.69768 5.81036 5.85728 5.88400 6.04105 6.05126 6.08784 6.14040 6.22712 6.28023 6.34994 6.39873 6.43768 6.49456 6.60669 6.69108 6.81432 6.87517 7.26398 7.36592 7.53880 7.71354 7.96818 8.20241 8.20764 9.09422 9.72884 10.49988 11.33042 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.003070 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.573570 B = 9119.390556 C = 9726.833408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.074 0.926 9 N -0.596 5.596 10 C 0.157 3.843 11 C -0.133 4.133 12 C -0.083 4.083 13 C 0.132 3.868 14 C -0.095 4.095 15 C -0.141 4.141 16 C -0.131 4.131 17 C 0.089 3.911 18 N -0.589 5.589 19 C 0.497 3.503 20 O -0.525 6.525 21 C 0.122 3.878 22 N -0.142 5.142 23 N -0.281 5.281 24 C -0.027 4.027 25 C -0.027 4.027 26 N -0.281 5.281 27 C 0.131 3.869 28 H 0.254 0.746 29 H 0.084 0.916 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.197 0.803 46 H 0.197 0.803 47 H 0.075 0.925 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.974 -19.456 -3.152 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.092 0.908 9 N -0.319 5.319 10 C 0.031 3.969 11 C -0.172 4.172 12 C -0.085 4.085 13 C 0.006 3.994 14 C -0.133 4.133 15 C -0.178 4.178 16 C -0.170 4.170 17 C -0.034 4.034 18 N -0.322 5.322 19 C 0.281 3.719 20 O -0.401 6.401 21 C -0.002 4.002 22 N -0.043 5.043 23 N -0.122 5.122 24 C -0.210 4.210 25 C -0.210 4.210 26 N -0.122 5.122 27 C 0.011 3.989 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.214 0.786 46 H 0.214 0.786 47 H 0.094 0.906 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.435 -18.376 -2.491 20.373 hybrid contribution 0.525 0.383 -0.781 1.016 sum 8.960 -17.993 -3.271 20.365 Atomic orbital electron populations 1.69906 1.05044 1.25319 1.55730 1.24878 0.95585 0.97886 1.01825 0.86168 0.78696 0.83510 0.77663 1.21520 1.21700 1.20600 1.18948 0.90628 0.82460 1.43475 0.90802 1.45010 1.13448 0.99840 1.73641 1.21548 0.86849 0.94296 0.94188 1.22853 0.95205 0.98782 1.00368 1.21476 0.95386 0.95209 0.96455 1.22110 0.96700 0.86625 0.93999 1.21094 0.99103 0.95707 0.97369 1.20759 0.95547 1.02210 0.99249 1.21249 0.97345 0.98101 1.00291 1.21974 0.95914 1.01763 0.83761 1.47704 1.42096 1.34119 1.08248 1.20427 0.83270 0.82612 0.85583 1.90770 1.56730 1.69899 1.22716 1.21858 1.01844 0.95053 0.81429 1.47368 1.21394 1.18177 1.17313 1.74040 1.20759 1.02742 1.14665 1.24771 0.97991 1.03541 0.94693 1.24780 1.02199 0.94368 0.99641 1.74052 1.11873 1.24424 1.01814 1.22214 0.88764 0.89149 0.98809 0.93622 0.89725 0.96271 0.92422 0.92385 0.95031 0.93395 0.92620 0.91717 0.92653 0.89605 0.92325 0.90642 0.90805 0.88177 0.84644 0.84682 0.78594 0.78586 0.90644 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.35 10.86 55.49 0.60 -25.75 16 2 C 0.00 -0.12 5.40 -17.43 -0.09 -0.22 16 3 Si 0.91 21.65 29.56 -169.99 -5.03 16.63 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.07 10.35 -15.05 -0.16 -6.22 16 8 H 0.07 1.91 7.84 -52.49 -0.41 1.50 16 9 N -0.60 -14.36 3.38 -168.97 -0.57 -14.93 16 10 C 0.16 3.64 5.90 -2.35 -0.01 3.63 16 11 C -0.13 -2.44 6.21 -25.44 -0.16 -2.60 16 12 C -0.08 -1.34 0.68 -154.02 -0.10 -1.45 16 13 C 0.13 2.45 4.44 -2.58 -0.01 2.43 16 14 C -0.09 -1.29 4.88 -27.97 -0.14 -1.43 16 15 C -0.14 -1.58 4.94 -29.67 -0.15 -1.73 16 16 C -0.13 -1.16 5.60 -28.65 -0.16 -1.32 16 17 C 0.09 0.88 5.10 -4.16 -0.02 0.85 16 18 N -0.59 -7.70 2.27 -172.47 -0.39 -8.09 16 19 C 0.50 6.98 7.69 -10.98 -0.08 6.89 16 20 O -0.53 -9.84 15.71 5.56 0.09 -9.75 16 21 C 0.12 1.27 5.51 -5.19 -0.03 1.24 16 22 N -0.14 -1.87 3.44 -11.66 -0.04 -1.91 16 23 N -0.28 -3.71 12.05 30.67 0.37 -3.34 16 24 C -0.03 -0.28 12.20 -17.21 -0.21 -0.49 16 25 C -0.03 -0.28 12.20 -17.21 -0.21 -0.49 16 26 N -0.28 -3.76 12.05 30.68 0.37 -3.39 16 27 C 0.13 2.13 4.72 -2.81 -0.01 2.12 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.08 2.23 6.52 -51.93 -0.34 1.89 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.07 7.49 -51.93 -0.39 0.68 16 32 H 0.06 0.96 7.34 -51.93 -0.38 0.58 16 33 H 0.03 0.60 5.96 -51.92 -0.31 0.29 16 34 H 0.05 0.84 5.12 -51.93 -0.27 0.58 16 35 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 36 H 0.06 0.89 7.42 -51.93 -0.39 0.51 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.08 4.61 -51.93 -0.24 0.84 16 39 H 0.06 0.51 7.30 -51.93 -0.38 0.13 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.49 6.26 -51.92 -0.32 0.17 16 42 H 0.10 1.11 5.15 -51.93 -0.27 0.85 16 43 H 0.14 1.04 7.11 -51.93 -0.37 0.67 16 44 H 0.14 1.03 7.31 -51.93 -0.38 0.65 16 45 H 0.20 1.23 8.06 -52.49 -0.42 0.80 16 46 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16 47 H 0.08 1.39 7.96 -51.93 -0.41 0.97 16 48 H 0.08 1.49 6.63 -51.93 -0.34 1.15 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -34.96 362.90 -7.52 -42.48 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.84 Total: 1.34 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.55 Total: 1.23 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.34 Total: -57.40 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.96 -7.52 -42.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045940608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.296 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds