Wall clock time and date at job start Tue Mar 31 2020 18:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00385 * 2 1 4 4 H 1.48502 * 109.46926 * 270.00024 * 3 2 1 5 5 H 1.48500 * 109.47020 * 30.00174 * 3 2 1 6 6 H 1.48506 * 109.47019 * 149.99845 * 3 2 1 7 7 C 1.38821 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00138 * 189.09458 * 7 2 1 9 9 N 1.36940 * 119.99357 * 9.09061 * 7 2 1 10 10 C 1.48172 * 127.80665 * 15.54178 * 9 7 2 11 11 C 1.54468 * 104.62444 * 140.62008 * 10 9 7 12 12 C 1.53995 * 104.81889 * 23.87430 * 11 10 9 13 13 C 1.48243 * 127.79680 * 195.50836 * 9 7 2 14 14 C 1.50730 * 110.88020 * 120.03800 * 12 11 10 15 15 C 1.52809 * 109.27996 * 213.00255 * 14 12 11 16 16 C 1.47074 * 114.31891 * 275.69351 * 15 14 12 17 17 C 1.54754 * 110.51808 * 62.91051 * 16 15 14 18 18 N 1.44543 * 109.61282 * 288.36152 * 17 16 15 19 19 C 1.34782 * 118.70467 * 270.61599 * 18 17 16 20 20 O 1.21278 * 119.99841 * 179.97438 * 19 18 17 21 21 C 1.50703 * 120.00135 * 359.97438 * 19 18 17 22 22 N 1.46499 * 109.46645 * 180.02562 * 21 19 18 23 23 N 1.28601 * 124.61650 * 269.69120 * 22 21 19 24 24 C 1.31381 * 108.71752 * 179.83560 * 23 22 21 25 25 C 1.39678 * 105.89752 * 0.41837 * 24 23 22 26 26 N 1.28595 * 124.61717 * 90.00670 * 22 21 19 27 27 C 1.47644 * 122.58998 * 90.89056 * 18 17 16 28 28 H 0.97004 * 119.99294 * 359.97438 * 1 2 3 29 29 H 1.08996 * 110.40768 * 21.83197 * 10 9 7 30 30 H 1.09001 * 110.40369 * 259.40785 * 10 9 7 31 31 H 1.08992 * 110.37248 * 265.04083 * 11 10 9 32 32 H 1.08997 * 110.36978 * 142.70754 * 11 10 9 33 33 H 1.09008 * 110.41241 * 100.43805 * 13 9 7 34 34 H 1.09000 * 110.42094 * 337.98701 * 13 9 7 35 35 H 1.09000 * 109.50320 * 93.06250 * 14 12 11 36 36 H 1.09001 * 109.53130 * 332.96067 * 14 12 11 37 37 H 1.09005 * 108.50856 * 154.44367 * 15 14 12 38 38 H 1.08996 * 108.51535 * 36.95299 * 15 14 12 39 39 H 1.08997 * 109.26695 * 302.63754 * 16 15 14 40 40 H 1.09000 * 109.26402 * 183.18252 * 16 15 14 41 41 H 1.09008 * 109.44388 * 168.31685 * 17 16 15 42 42 H 1.08993 * 109.42619 * 48.39183 * 17 16 15 43 43 H 1.08997 * 109.46844 * 60.00373 * 21 19 18 44 44 H 1.08999 * 109.46935 * 299.99797 * 21 19 18 45 45 H 1.07993 * 127.05596 * 180.16469 * 24 23 22 46 46 H 1.08007 * 127.05033 * 179.77139 * 25 24 23 47 47 H 1.09003 * 108.96365 * 78.40506 * 27 18 17 48 48 H 1.08999 * 108.97300 * 197.09192 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0800 -1.2081 0.1484 9 7 1.3383 -2.3807 -0.1863 10 6 -0.0350 -2.5702 -0.7093 11 6 0.0604 -3.8199 -1.6122 12 6 1.2794 -4.5970 -1.0815 13 6 1.8210 -3.7552 0.0884 14 6 0.8786 -5.9743 -0.6185 15 6 1.7575 -6.3855 0.5619 16 6 3.0506 -6.9721 0.1787 17 6 3.9088 -5.9386 -0.5897 18 7 3.3508 -5.7278 -1.9063 19 6 3.7642 -6.5161 -2.9184 20 8 3.3112 -6.3599 -4.0325 21 6 4.7893 -7.5915 -2.6656 22 7 5.0685 -8.3032 -3.9153 23 7 4.4368 -9.3486 -4.3175 24 6 4.9375 -9.7256 -5.4722 25 6 5.9599 -8.8186 -5.7602 26 7 5.9826 -7.9710 -4.7566 27 6 2.3503 -4.6791 -2.1874 28 1 -0.4849 0.8401 0.0004 29 1 -0.3426 -1.7024 -1.2928 30 1 -0.7328 -2.7453 0.1096 31 1 0.2197 -3.5270 -2.6499 32 1 -0.8428 -4.4232 -1.5217 33 1 1.4194 -4.1170 1.0350 34 1 2.9106 -3.7800 0.1023 35 1 1.0094 -6.6849 -1.4346 36 1 -0.1663 -5.9647 -0.3083 37 1 1.2118 -7.1130 1.1628 38 1 1.9453 -5.5053 1.1768 39 1 2.8774 -7.8400 -0.4575 40 1 3.5834 -7.2857 1.0765 41 1 4.9287 -6.3117 -0.6831 42 1 3.9160 -4.9956 -0.0433 43 1 4.4047 -8.2932 -1.9255 44 1 5.7077 -7.1376 -2.2933 45 1 4.6255 -10.5668 -6.0732 46 1 6.6004 -8.8147 -6.6299 47 1 2.8576 -3.7175 -2.2662 48 1 1.8630 -4.8996 -3.1371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045940608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:41 Heat of formation + Delta-G solvation = 102.061654 kcal Electronic energy + Delta-G solvation = -30210.047014 eV Core-core repulsion = 26303.456329 eV Total energy + Delta-G solvation = -3906.590684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.47038 -41.93430 -40.00843 -37.51910 -35.29278 -34.73234 -34.38187 -33.36874 -32.47215 -30.51857 -29.55385 -28.26284 -27.25689 -26.38496 -24.54902 -23.79931 -23.40128 -22.54012 -21.56604 -20.33203 -19.54819 -18.92407 -18.63646 -18.36278 -17.19966 -17.05890 -16.97884 -16.63983 -16.09880 -15.92546 -15.69356 -15.26461 -15.21270 -15.05051 -14.93224 -14.60852 -14.14618 -13.79696 -13.56411 -13.40932 -13.23344 -13.17171 -12.85155 -12.66035 -12.55479 -12.52532 -12.20119 -12.06599 -11.94521 -11.84260 -11.77976 -11.57772 -11.32521 -11.31263 -11.22838 -11.11909 -10.98542 -10.64742 -10.22391 -9.73715 -8.83411 -7.88975 -5.23942 0.74635 1.24990 1.33760 1.44855 1.46949 1.54729 1.63863 1.96774 2.48495 3.20851 3.29603 3.30411 3.58980 3.69878 3.77991 3.84577 3.96697 3.98462 4.04685 4.08582 4.16705 4.23934 4.40946 4.49284 4.57171 4.60253 4.63982 4.64568 4.79114 4.83062 4.84746 5.01845 5.07891 5.09234 5.15316 5.21481 5.31857 5.36437 5.36720 5.39217 5.44852 5.50762 5.60791 5.62860 5.67571 5.72910 6.21773 6.25594 6.92293 7.03452 7.38465 7.72233 8.50707 9.24339 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.003070 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.573570 B = 9119.390556 C = 9726.833408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.972 3.028 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.620 5.620 10 C 0.162 3.838 11 C -0.124 4.124 12 C -0.067 4.067 13 C 0.135 3.865 14 C -0.091 4.091 15 C -0.137 4.137 16 C -0.127 4.127 17 C 0.080 3.920 18 N -0.584 5.584 19 C 0.495 3.505 20 O -0.581 6.581 21 C 0.124 3.876 22 N -0.158 5.158 23 N -0.311 5.311 24 C -0.026 4.026 25 C -0.026 4.026 26 N -0.315 5.315 27 C 0.143 3.857 28 H 0.247 0.753 29 H 0.045 0.955 30 H 0.000 1.000 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.167 0.833 44 H 0.165 0.835 45 H 0.232 0.768 46 H 0.231 0.769 47 H 0.047 0.953 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.325 -22.348 -2.496 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.258 4.258 3 Si 0.801 3.199 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.344 5.344 10 C 0.036 3.964 11 C -0.164 4.164 12 C -0.069 4.069 13 C 0.011 3.989 14 C -0.129 4.129 15 C -0.175 4.175 16 C -0.165 4.165 17 C -0.042 4.042 18 N -0.315 5.315 19 C 0.281 3.719 20 O -0.461 6.461 21 C 0.001 3.999 22 N -0.058 5.058 23 N -0.152 5.152 24 C -0.208 4.208 25 C -0.209 4.209 26 N -0.155 5.155 27 C 0.020 3.980 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.018 0.982 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.105 0.895 43 H 0.185 0.815 44 H 0.183 0.817 45 H 0.248 0.752 46 H 0.247 0.753 47 H 0.065 0.935 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.825 -21.308 -1.784 23.966 hybrid contribution -0.200 1.219 -1.044 1.618 sum 10.625 -20.089 -2.829 22.901 Atomic orbital electron populations 1.70098 1.06478 1.25400 1.57638 1.25664 0.96373 1.01074 1.02667 0.85170 0.77990 0.79488 0.77272 1.21832 1.22289 1.18903 1.19337 0.91198 0.83676 1.41778 0.90126 1.45285 1.13672 1.01351 1.74085 1.21338 0.86512 0.94794 0.93741 1.22744 0.97513 0.97278 0.98827 1.21318 0.94112 0.96222 0.95293 1.22302 0.97605 0.84002 0.94994 1.21064 0.99789 0.93514 0.98506 1.20728 0.96708 1.02206 0.97809 1.21254 0.95938 0.97613 1.01667 1.22302 0.98271 1.01822 0.81782 1.47697 1.41088 1.32969 1.09714 1.21126 0.83226 0.82893 0.84610 1.90742 1.58813 1.71570 1.24951 1.22101 1.01816 0.94445 0.81516 1.47585 1.21647 1.18509 1.18018 1.73999 1.21649 1.03414 1.16091 1.25458 0.97238 1.04098 0.94054 1.25459 1.02285 0.93378 0.99788 1.74012 1.12832 1.25707 1.02986 1.21781 0.89228 0.89051 0.97907 0.94394 0.93653 0.98168 0.93210 0.90280 0.94274 0.92053 0.92577 0.91806 0.90940 0.90985 0.91303 0.87288 0.86676 0.89534 0.81529 0.81725 0.75188 0.75294 0.93490 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.04 10.86 21.65 0.24 -56.80 16 2 C -0.06 -3.62 5.40 84.86 0.46 -3.17 16 3 Si 0.97 45.49 29.56 68.60 2.03 47.52 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.23 -12.59 10.35 84.04 0.87 -11.72 16 8 H 0.08 4.18 7.84 -2.91 -0.02 4.15 16 9 N -0.62 -30.67 3.38 -688.49 -2.33 -33.00 16 10 C 0.16 7.89 5.90 86.56 0.51 8.41 16 11 C -0.12 -4.71 6.21 31.43 0.20 -4.51 16 12 C -0.07 -2.17 0.68 -51.86 -0.04 -2.20 16 13 C 0.14 4.99 4.44 86.37 0.38 5.38 16 14 C -0.09 -2.31 4.88 29.79 0.15 -2.16 16 15 C -0.14 -2.65 4.94 28.69 0.14 -2.51 16 16 C -0.13 -1.67 5.60 29.35 0.16 -1.51 16 17 C 0.08 1.29 5.10 87.34 0.45 1.74 16 18 N -0.58 -14.36 2.27 -817.95 -1.86 -16.21 16 19 C 0.49 13.22 7.69 87.66 0.67 13.90 16 20 O -0.58 -21.92 15.71 -3.02 -0.05 -21.97 16 21 C 0.12 2.22 5.51 85.63 0.47 2.69 16 22 N -0.16 -3.83 3.44 -190.81 -0.66 -4.48 16 23 N -0.31 -7.58 12.05 -56.87 -0.69 -8.27 16 24 C -0.03 -0.47 12.20 85.11 1.04 0.57 16 25 C -0.03 -0.49 12.20 85.11 1.04 0.55 16 26 N -0.31 -7.88 12.05 -56.86 -0.69 -8.56 16 27 C 0.14 4.68 4.72 86.55 0.41 5.09 16 28 H 0.25 14.51 8.31 -92.71 -0.77 13.73 16 29 H 0.04 2.54 6.52 -2.39 -0.02 2.53 16 30 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.05 1.95 7.49 -2.39 -0.02 1.93 16 32 H 0.08 2.64 7.34 -2.39 -0.02 2.62 16 33 H 0.04 1.44 5.96 -2.38 -0.01 1.42 16 34 H 0.06 2.10 5.12 -2.39 -0.01 2.09 16 35 H 0.06 1.45 7.56 -2.39 -0.02 1.43 16 36 H 0.06 1.65 7.42 -2.39 -0.02 1.63 16 37 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.07 1.61 4.61 -2.39 -0.01 1.60 16 39 H 0.07 0.84 7.30 -2.39 -0.02 0.82 16 40 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.12 0.96 6.26 -2.38 -0.01 0.94 16 42 H 0.09 1.69 5.15 -2.39 -0.01 1.67 16 43 H 0.17 1.84 7.11 -2.39 -0.02 1.82 16 44 H 0.17 1.85 7.31 -2.39 -0.02 1.84 16 45 H 0.23 2.15 8.06 -2.91 -0.02 2.12 16 46 H 0.23 2.25 8.06 -2.91 -0.02 2.23 16 47 H 0.05 1.79 7.96 -2.39 -0.02 1.77 16 48 H 0.06 2.37 6.63 -2.39 -0.02 2.36 16 Total: -1.00 -81.46 362.90 3.90 -77.57 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.98 Total: 13.65 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.91 Total: 10.55 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -5.98 Total: -127.32 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -81.46 3.90 -77.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045940608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.629 kcal (2) G-P(sol) polarization free energy of solvation -81.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds