Wall clock time and date at job start Tue Mar 31 2020 18:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99470 * 2 1 4 4 H 1.48496 * 109.47121 * 269.99867 * 3 2 1 5 5 H 1.48495 * 109.47428 * 30.00212 * 3 2 1 6 6 H 1.48502 * 109.46716 * 150.00307 * 3 2 1 7 7 C 1.38812 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99766 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.65498 * 359.97438 * 9 7 2 11 11 C 1.54910 * 104.83625 * 155.90472 * 10 9 7 12 12 C 1.55160 * 101.57896 * 37.01195 * 11 10 9 13 13 H 1.08995 * 110.71937 * 83.03723 * 12 11 10 14 14 N 1.46900 * 110.71464 * 206.13760 * 12 11 10 15 15 C 1.46904 * 110.99915 * 190.00182 * 14 12 11 16 16 C 1.53234 * 109.34100 * 187.25295 * 15 14 12 17 17 N 1.47080 * 108.51995 * 306.16449 * 16 15 14 18 18 C 1.34776 * 120.88309 * 231.18793 * 17 16 15 19 19 O 1.21285 * 119.99700 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.00194 * 180.02562 * 18 17 16 21 21 N 1.46501 * 109.47247 * 179.97438 * 20 18 17 22 22 C 1.34951 * 126.03602 * 125.25525 * 21 20 18 23 23 C 1.35312 * 107.74772 * 180.15058 * 22 21 20 24 24 C 1.39869 * 107.91889 * 359.61173 * 23 22 21 25 25 N 1.30837 * 108.20188 * 0.23962 * 24 23 22 26 26 C 1.47074 * 118.23348 * 51.46192 * 17 16 15 27 27 C 1.46895 * 111.00044 * 314.29659 * 14 12 11 28 28 C 1.47030 * 125.64550 * 180.02562 * 9 7 2 29 29 H 0.97001 * 120.00319 * 359.97438 * 1 2 3 30 30 H 1.08999 * 110.36537 * 37.06510 * 10 9 7 31 31 H 1.08996 * 110.36464 * 274.74723 * 10 9 7 32 32 H 1.08997 * 111.00238 * 278.93890 * 11 10 9 33 33 H 1.08994 * 111.00452 * 155.08679 * 11 10 9 34 34 H 1.09001 * 109.49685 * 67.28640 * 15 14 12 35 35 H 1.09005 * 109.50902 * 307.22484 * 15 14 12 36 36 H 1.08999 * 109.62491 * 186.45624 * 16 15 14 37 37 H 1.08997 * 109.79072 * 65.97364 * 16 15 14 38 38 H 1.08998 * 109.47444 * 59.99588 * 20 18 17 39 39 H 1.08997 * 109.46880 * 300.00019 * 20 18 17 40 40 H 1.08008 * 126.12704 * 0.02562 * 22 21 20 41 41 H 1.08002 * 126.04491 * 179.88067 * 23 22 21 42 42 H 1.08001 * 125.90169 * 180.26638 * 24 23 22 43 43 H 1.09002 * 109.63131 * 68.25404 * 26 17 16 44 44 H 1.09005 * 109.62728 * 188.82576 * 26 17 16 45 45 H 1.08996 * 109.49877 * 292.71248 * 27 14 12 46 46 H 1.09007 * 109.49366 * 52.76679 * 27 14 12 47 47 H 1.08996 * 109.88190 * 61.61205 * 28 9 7 48 48 H 1.08997 * 109.88372 * 300.44374 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0005 11 6 -0.4019 -3.9324 -0.6112 12 6 0.7786 -4.7524 -0.0270 13 1 0.5456 -5.1007 0.9792 14 7 1.1090 -5.8842 -0.9033 15 6 2.0570 -6.7966 -0.2499 16 6 2.5142 -7.8587 -1.2554 17 7 1.3228 -8.5046 -1.8269 18 6 1.2052 -9.8471 -1.8447 19 8 2.0887 -10.5394 -1.3852 20 6 -0.0240 -10.4881 -2.4357 21 7 0.0893 -11.9453 -2.3362 22 6 -0.8075 -12.7739 -1.7614 23 6 -0.3338 -14.0364 -1.8739 24 6 0.8903 -13.9782 -2.5480 25 7 1.1449 -12.7252 -2.8256 26 6 0.2659 -7.6468 -2.3838 27 6 -0.1055 -6.5928 -1.3285 28 6 1.9320 -3.7274 -0.0005 29 1 -0.4851 0.8400 0.0004 30 1 -0.5997 -1.7589 -0.6147 31 1 -0.5264 -2.4869 1.0192 32 1 -0.3530 -3.8981 -1.6996 33 1 -1.3590 -4.3328 -0.2771 34 1 1.5704 -7.2821 0.5960 35 1 2.9211 -6.2330 0.1019 36 1 3.1267 -8.6038 -0.7478 37 1 3.0931 -7.3891 -2.0507 38 1 -0.1151 -10.2018 -3.4835 39 1 -0.9062 -10.1537 -1.8898 40 1 -1.7361 -12.4815 -1.2935 41 1 -0.8176 -14.9314 -1.5113 42 1 1.5170 -14.8219 -2.7969 43 1 0.6309 -7.1543 -3.2850 44 1 -0.6089 -8.2518 -2.6226 45 1 -0.5620 -7.0811 -0.4677 46 1 -0.8100 -5.8810 -1.7589 47 1 2.5288 -3.8642 0.9012 48 1 2.5580 -3.8510 -0.8842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046005102.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:26 Heat of formation + Delta-G solvation = 106.382597 kcal Electronic energy + Delta-G solvation = -28712.523968 eV Core-core repulsion = 24806.120653 eV Total energy + Delta-G solvation = -3906.403314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46594 -40.30270 -38.64465 -36.70514 -34.40609 -33.67064 -32.04962 -31.45895 -30.31361 -29.26989 -28.61799 -27.33684 -25.93854 -24.25437 -23.64592 -22.17633 -21.35790 -21.00033 -20.03893 -19.72005 -19.14464 -17.80088 -17.46441 -16.89376 -16.14241 -16.05040 -15.58141 -14.96370 -14.94843 -14.64608 -14.58566 -14.45792 -14.11932 -13.87786 -13.54802 -13.37700 -13.16501 -12.98030 -12.54047 -12.52623 -12.47354 -11.90515 -11.75787 -11.58866 -11.43133 -11.29270 -10.96623 -10.85758 -10.82386 -10.41920 -10.30082 -10.18104 -10.08973 -9.82152 -9.59316 -9.57075 -8.98184 -8.85409 -8.66317 -8.22149 -6.84090 -5.66839 -3.07996 1.60590 2.07016 2.25132 2.66542 2.70420 3.39334 3.44320 3.46151 3.82577 3.94231 4.19163 4.48780 4.50191 4.57329 4.64404 4.75212 4.80583 4.92004 5.03004 5.18403 5.22286 5.29772 5.39718 5.46375 5.48394 5.50414 5.55386 5.65642 5.68278 5.75318 5.78706 5.84707 5.93223 6.15913 6.23731 6.39837 6.44921 6.53554 6.62056 6.64900 6.67713 7.05147 7.12750 7.34237 7.46759 7.48108 7.61750 7.82442 7.82674 8.34294 9.20893 9.81952 10.46408 11.37377 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.040735 B = 0.002017 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.212971 B =13877.153552 C =14256.355636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.153 3.847 11 C -0.139 4.139 12 C 0.072 3.928 13 H 0.044 0.956 14 N -0.526 5.526 15 C 0.043 3.957 16 C 0.120 3.880 17 N -0.611 5.611 18 C 0.502 3.498 19 O -0.514 6.514 20 C 0.117 3.883 21 N -0.364 5.364 22 C 0.051 3.949 23 C -0.271 4.271 24 C 0.038 3.962 25 N -0.267 5.267 26 C 0.109 3.891 27 C 0.039 3.961 28 C 0.148 3.852 29 H 0.252 0.748 30 H 0.108 0.892 31 H 0.010 0.990 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.034 0.966 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.173 0.827 41 H 0.147 0.853 42 H 0.182 0.818 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.097 0.903 47 H 0.016 0.984 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.327 -23.627 -5.076 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.177 4.177 12 C -0.036 4.036 13 H 0.062 0.938 14 N -0.251 5.251 15 C -0.086 4.086 16 C -0.002 4.002 17 N -0.346 5.346 18 C 0.287 3.713 19 O -0.388 6.388 20 C -0.009 4.009 21 N -0.147 5.147 22 C -0.094 4.094 23 C -0.301 4.301 24 C -0.149 4.149 25 N -0.087 5.087 26 C -0.014 4.014 27 C -0.090 4.090 28 C 0.022 3.978 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.190 0.810 41 H 0.165 0.835 42 H 0.199 0.801 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.053 0.947 46 H 0.115 0.885 47 H 0.033 0.967 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.839 -22.621 -5.766 23.658 hybrid contribution -0.638 0.040 1.294 1.443 sum -4.478 -22.582 -4.472 23.452 Atomic orbital electron populations 1.69780 1.04885 1.24734 1.57901 1.24782 0.95747 0.97713 1.02572 0.86062 0.78511 0.83295 0.77582 1.21584 1.21692 1.20761 1.19076 0.90522 0.82389 1.42732 0.90478 1.44434 1.01895 0.99715 1.86921 1.21916 0.84924 0.92322 0.98067 1.23167 0.94966 0.98784 1.00826 1.22719 0.97830 0.89848 0.93223 0.93756 1.61965 1.12596 1.08791 1.41734 1.22478 0.97575 0.93680 0.94888 1.21745 0.86708 0.94681 0.97095 1.48187 1.21356 1.04751 1.60319 1.20457 0.88524 0.82208 0.80097 1.90783 1.40992 1.61548 1.45497 1.21519 0.98594 0.76545 1.04205 1.48117 1.16125 1.05342 1.45114 1.22549 0.96462 0.90841 0.99577 1.21498 0.99350 0.97334 1.11872 1.23937 0.96888 0.94992 0.99058 1.77507 1.07858 1.02868 1.20501 1.22076 0.89826 0.92038 0.97478 1.22581 0.93164 0.95940 0.97316 1.21195 0.93316 0.85322 0.97984 0.93767 0.87403 0.97203 0.91085 0.92749 0.94730 0.89047 0.88883 0.90323 0.86765 0.85829 0.80956 0.83488 0.80083 0.89701 0.89953 0.94708 0.88482 0.96658 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.09 55.49 0.56 -26.03 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.27 3.39 -170.07 -0.58 -15.85 16 10 C 0.15 3.61 5.89 -2.53 -0.01 3.59 16 11 C -0.14 -2.44 4.93 -24.58 -0.12 -2.56 16 12 C 0.07 1.19 2.72 -65.88 -0.18 1.01 16 13 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 14 N -0.53 -7.06 4.45 -223.86 -1.00 -8.06 16 15 C 0.04 0.52 5.50 -3.70 -0.02 0.50 16 16 C 0.12 1.37 6.60 -3.60 -0.02 1.35 16 17 N -0.61 -6.32 3.00 -172.19 -0.52 -6.83 16 18 C 0.50 5.77 7.74 -10.99 -0.09 5.68 16 19 O -0.51 -8.24 15.16 5.55 0.08 -8.15 16 20 C 0.12 0.91 5.35 -5.20 -0.03 0.89 16 21 N -0.36 -3.81 3.40 -62.55 -0.21 -4.02 16 22 C 0.05 0.42 11.45 -17.22 -0.20 0.22 16 23 C -0.27 -2.31 10.80 -40.01 -0.43 -2.74 16 24 C 0.04 0.39 12.03 -17.36 -0.21 0.18 16 25 N -0.27 -3.47 11.64 30.62 0.36 -3.11 16 26 C 0.11 0.87 6.53 -3.37 -0.02 0.85 16 27 C 0.04 0.40 5.30 -3.46 -0.02 0.38 16 28 C 0.15 3.05 6.33 -3.06 -0.02 3.03 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 30 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 1.25 7.63 -51.93 -0.40 0.85 16 33 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 1.15 7.59 -51.93 -0.39 0.75 16 36 H 0.09 1.14 7.06 -51.93 -0.37 0.78 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.11 0.67 7.99 -51.93 -0.41 0.26 16 39 H 0.12 0.52 7.60 -51.93 -0.39 0.13 16 40 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.37 6.02 -51.93 -0.31 0.06 16 45 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.99 6.14 -51.92 -0.32 0.67 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.04 0.77 8.03 -51.93 -0.42 0.35 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -35.73 378.17 -9.76 -45.49 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.51 Total: -1.76 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.62 Total: 5.71 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -1.39 Total: -63.90 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.08 Total: -8.15 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.73 -9.76 -45.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046005102.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.873 kcal (2) G-P(sol) polarization free energy of solvation -35.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds