Wall clock time and date at job start Tue Mar 31 2020 18:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99470 * 2 1 4 4 H 1.48496 * 109.47121 * 269.99867 * 3 2 1 5 5 H 1.48495 * 109.47428 * 30.00212 * 3 2 1 6 6 H 1.48502 * 109.46716 * 150.00307 * 3 2 1 7 7 C 1.38812 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99766 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.65498 * 359.97438 * 9 7 2 11 11 C 1.54910 * 104.83625 * 155.90472 * 10 9 7 12 12 C 1.55160 * 101.57896 * 37.01195 * 11 10 9 13 13 H 1.08995 * 110.71937 * 83.03723 * 12 11 10 14 14 N 1.46900 * 110.71464 * 206.13760 * 12 11 10 15 15 C 1.46904 * 110.99915 * 190.00182 * 14 12 11 16 16 C 1.53234 * 109.34100 * 187.25295 * 15 14 12 17 17 N 1.47080 * 108.51995 * 306.16449 * 16 15 14 18 18 C 1.34776 * 120.88309 * 231.18793 * 17 16 15 19 19 O 1.21285 * 119.99700 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.00194 * 180.02562 * 18 17 16 21 21 N 1.46501 * 109.47247 * 179.97438 * 20 18 17 22 22 C 1.34951 * 126.03602 * 125.25525 * 21 20 18 23 23 C 1.35312 * 107.74772 * 180.15058 * 22 21 20 24 24 C 1.39869 * 107.91889 * 359.61173 * 23 22 21 25 25 N 1.30837 * 108.20188 * 0.23962 * 24 23 22 26 26 C 1.47074 * 118.23348 * 51.46192 * 17 16 15 27 27 C 1.46895 * 111.00044 * 314.29659 * 14 12 11 28 28 C 1.47030 * 125.64550 * 180.02562 * 9 7 2 29 29 H 0.97001 * 120.00319 * 359.97438 * 1 2 3 30 30 H 1.08999 * 110.36537 * 37.06510 * 10 9 7 31 31 H 1.08996 * 110.36464 * 274.74723 * 10 9 7 32 32 H 1.08997 * 111.00238 * 278.93890 * 11 10 9 33 33 H 1.08994 * 111.00452 * 155.08679 * 11 10 9 34 34 H 1.09001 * 109.49685 * 67.28640 * 15 14 12 35 35 H 1.09005 * 109.50902 * 307.22484 * 15 14 12 36 36 H 1.08999 * 109.62491 * 186.45624 * 16 15 14 37 37 H 1.08997 * 109.79072 * 65.97364 * 16 15 14 38 38 H 1.08998 * 109.47444 * 59.99588 * 20 18 17 39 39 H 1.08997 * 109.46880 * 300.00019 * 20 18 17 40 40 H 1.08008 * 126.12704 * 0.02562 * 22 21 20 41 41 H 1.08002 * 126.04491 * 179.88067 * 23 22 21 42 42 H 1.08001 * 125.90169 * 180.26638 * 24 23 22 43 43 H 1.09002 * 109.63131 * 68.25404 * 26 17 16 44 44 H 1.09005 * 109.62728 * 188.82576 * 26 17 16 45 45 H 1.08996 * 109.49877 * 292.71248 * 27 14 12 46 46 H 1.09007 * 109.49366 * 52.76679 * 27 14 12 47 47 H 1.08996 * 109.88190 * 61.61205 * 28 9 7 48 48 H 1.08997 * 109.88372 * 300.44374 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0005 11 6 -0.4019 -3.9324 -0.6112 12 6 0.7786 -4.7524 -0.0270 13 1 0.5456 -5.1007 0.9792 14 7 1.1090 -5.8842 -0.9033 15 6 2.0570 -6.7966 -0.2499 16 6 2.5142 -7.8587 -1.2554 17 7 1.3228 -8.5046 -1.8269 18 6 1.2052 -9.8471 -1.8447 19 8 2.0887 -10.5394 -1.3852 20 6 -0.0240 -10.4881 -2.4357 21 7 0.0893 -11.9453 -2.3362 22 6 -0.8075 -12.7739 -1.7614 23 6 -0.3338 -14.0364 -1.8739 24 6 0.8903 -13.9782 -2.5480 25 7 1.1449 -12.7252 -2.8256 26 6 0.2659 -7.6468 -2.3838 27 6 -0.1055 -6.5928 -1.3285 28 6 1.9320 -3.7274 -0.0005 29 1 -0.4851 0.8400 0.0004 30 1 -0.5997 -1.7589 -0.6147 31 1 -0.5264 -2.4869 1.0192 32 1 -0.3530 -3.8981 -1.6996 33 1 -1.3590 -4.3328 -0.2771 34 1 1.5704 -7.2821 0.5960 35 1 2.9211 -6.2330 0.1019 36 1 3.1267 -8.6038 -0.7478 37 1 3.0931 -7.3891 -2.0507 38 1 -0.1151 -10.2018 -3.4835 39 1 -0.9062 -10.1537 -1.8898 40 1 -1.7361 -12.4815 -1.2935 41 1 -0.8176 -14.9314 -1.5113 42 1 1.5170 -14.8219 -2.7969 43 1 0.6309 -7.1543 -3.2850 44 1 -0.6089 -8.2518 -2.6226 45 1 -0.5620 -7.0811 -0.4677 46 1 -0.8100 -5.8810 -1.7589 47 1 2.5288 -3.8642 0.9012 48 1 2.5580 -3.8510 -0.8842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046005102.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:26 Heat of formation + Delta-G solvation = 81.107321 kcal Electronic energy + Delta-G solvation = -28713.619986 eV Core-core repulsion = 24806.120653 eV Total energy + Delta-G solvation = -3907.499333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13115 -41.17675 -39.86165 -38.04948 -35.66729 -34.43013 -33.75967 -32.38890 -30.96412 -30.92292 -29.77803 -28.38639 -27.26556 -25.83648 -24.69783 -23.04486 -21.98504 -21.83826 -21.76362 -21.04393 -19.99136 -18.92732 -18.53877 -18.13847 -17.23134 -16.83685 -16.77016 -16.41767 -16.03505 -15.90416 -15.61903 -15.37688 -15.14562 -14.85522 -14.53072 -14.39967 -14.22127 -14.15291 -13.62715 -13.53755 -13.38641 -13.36611 -13.11558 -12.94038 -12.72454 -12.62287 -12.46531 -12.25370 -11.99197 -11.86104 -11.76880 -11.58851 -11.54085 -11.35158 -11.12600 -10.73529 -10.29784 -9.88164 -9.48667 -9.26814 -8.87029 -7.76945 -5.20761 0.96936 1.44723 1.47065 1.48622 1.49484 1.57138 1.95862 2.02324 2.48547 2.79609 3.26645 3.33254 3.69740 3.70123 3.76491 3.89636 3.97032 4.05798 4.10256 4.14569 4.20583 4.22543 4.27932 4.33947 4.43419 4.48334 4.66285 4.71068 4.72493 4.73919 4.85203 4.93474 4.94157 5.01281 5.04028 5.11624 5.15365 5.18289 5.33971 5.46979 5.65749 5.75405 5.81438 6.03148 6.11418 6.13444 6.32382 6.33989 6.81610 7.01947 7.12433 7.79654 8.42784 9.24792 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.040735 B = 0.002017 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.212971 B =13877.153552 C =14256.355636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.237 4.237 8 H 0.077 0.923 9 N -0.626 5.626 10 C 0.152 3.848 11 C -0.116 4.116 12 C 0.091 3.909 13 H 0.046 0.954 14 N -0.532 5.532 15 C 0.050 3.950 16 C 0.125 3.875 17 N -0.608 5.608 18 C 0.498 3.502 19 O -0.569 6.569 20 C 0.115 3.885 21 N -0.375 5.375 22 C 0.055 3.945 23 C -0.285 4.285 24 C 0.026 3.974 25 N -0.326 5.326 26 C 0.111 3.889 27 C 0.035 3.965 28 C 0.146 3.854 29 H 0.247 0.753 30 H 0.075 0.925 31 H -0.015 1.015 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.034 0.966 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.137 0.863 39 H 0.169 0.831 40 H 0.214 0.786 41 H 0.169 0.831 42 H 0.197 0.803 43 H 0.086 0.914 44 H 0.128 0.872 45 H 0.044 0.956 46 H 0.105 0.895 47 H 0.011 0.989 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -24.952 -5.733 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.352 5.352 10 C 0.026 3.974 11 C -0.155 4.155 12 C -0.018 4.018 13 H 0.064 0.936 14 N -0.258 5.258 15 C -0.079 4.079 16 C 0.002 3.998 17 N -0.342 5.342 18 C 0.286 3.714 19 O -0.447 6.447 20 C -0.009 4.009 21 N -0.158 5.158 22 C -0.090 4.090 23 C -0.314 4.314 24 C -0.160 4.160 25 N -0.147 5.147 26 C -0.011 4.011 27 C -0.093 4.093 28 C 0.020 3.980 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.003 0.997 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.155 0.845 39 H 0.186 0.814 40 H 0.231 0.769 41 H 0.187 0.813 42 H 0.214 0.786 43 H 0.105 0.895 44 H 0.146 0.854 45 H 0.062 0.938 46 H 0.123 0.877 47 H 0.029 0.971 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.713 -23.964 -6.444 25.465 hybrid contribution -0.040 0.425 1.520 1.578 sum -5.753 -23.539 -4.924 24.727 Atomic orbital electron populations 1.70029 1.06046 1.25001 1.58660 1.25600 0.96698 1.00827 1.02801 0.85065 0.77503 0.79144 0.77533 1.21128 1.21918 1.19837 1.19414 0.90915 0.83857 1.42467 0.90536 1.44753 1.02927 1.00770 1.86792 1.21747 0.83979 0.95187 0.96437 1.22946 0.96871 0.95015 1.00648 1.22371 0.95322 0.90077 0.93991 0.93567 1.61889 1.14417 1.08773 1.40688 1.22389 0.97045 0.93417 0.95014 1.21545 0.87423 0.94023 0.96788 1.48274 1.21297 1.04923 1.59748 1.21176 0.89107 0.82050 0.79110 1.90764 1.43200 1.62730 1.47986 1.21852 0.97906 0.75262 1.05866 1.48340 1.15969 1.06250 1.45282 1.23272 0.97124 0.90441 0.98177 1.21886 0.98911 0.98716 1.11898 1.24394 0.97884 0.94902 0.98864 1.77419 1.10156 1.04225 1.22890 1.22282 0.90700 0.91738 0.96337 1.22739 0.91793 0.96494 0.98273 1.21312 0.94744 0.84614 0.97335 0.94295 0.90671 0.99722 0.90631 0.89454 0.94789 0.89997 0.90229 0.90495 0.84517 0.81370 0.76900 0.81331 0.78613 0.89532 0.85375 0.93798 0.87736 0.97133 0.95012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.82 10.09 21.65 0.22 -55.60 16 2 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 3 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.24 -13.40 10.27 84.03 0.86 -12.54 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.63 -32.23 3.39 -691.99 -2.35 -34.58 16 10 C 0.15 7.25 5.89 86.86 0.51 7.77 16 11 C -0.12 -3.88 4.93 31.99 0.16 -3.72 16 12 C 0.09 2.89 2.72 46.10 0.13 3.02 16 13 H 0.05 1.47 8.07 -2.39 -0.02 1.45 16 14 N -0.53 -13.15 4.45 -862.15 -3.84 -16.99 16 15 C 0.05 1.17 5.50 86.38 0.48 1.65 16 16 C 0.13 2.77 6.60 86.35 0.57 3.34 16 17 N -0.61 -11.11 3.00 -817.07 -2.45 -13.56 16 18 C 0.50 10.45 7.74 87.66 0.68 11.13 16 19 O -0.57 -18.18 15.16 -3.05 -0.05 -18.23 16 20 C 0.12 1.37 5.35 85.63 0.46 1.83 16 21 N -0.38 -6.96 3.40 -351.80 -1.20 -8.16 16 22 C 0.05 0.72 11.45 83.54 0.96 1.68 16 23 C -0.29 -4.29 10.80 21.99 0.24 -4.06 16 24 C 0.03 0.51 12.03 85.24 1.02 1.54 16 25 N -0.33 -8.32 11.64 -57.02 -0.66 -8.98 16 26 C 0.11 1.32 6.53 86.50 0.57 1.88 16 27 C 0.04 0.59 5.30 86.54 0.46 1.05 16 28 C 0.15 6.00 6.33 86.73 0.55 6.55 16 29 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.08 4.10 5.87 -2.39 -0.01 4.09 16 31 H -0.02 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H 0.08 2.48 7.63 -2.39 -0.02 2.46 16 33 H 0.09 2.37 8.06 -2.39 -0.02 2.35 16 34 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 2.05 7.59 -2.38 -0.02 2.03 16 36 H 0.08 2.00 7.06 -2.39 -0.02 1.98 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.14 1.01 7.99 -2.39 -0.02 0.99 16 39 H 0.17 0.41 7.60 -2.39 -0.02 0.39 16 40 H 0.21 0.79 8.06 -2.91 -0.02 0.76 16 41 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.20 2.79 8.06 -2.91 -0.02 2.76 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.13 0.38 6.02 -2.38 -0.01 0.37 16 45 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.10 1.66 6.14 -2.38 -0.01 1.64 16 47 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.03 1.34 8.03 -2.39 -0.02 1.32 16 Total: -1.00 -82.57 378.17 0.75 -81.82 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.95 Total: 8.81 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 8.10 Total: 17.79 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -10.28 Total: -137.86 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.05 Total: -18.23 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -82.57 0.75 -81.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046005102.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.928 kcal (2) G-P(sol) polarization free energy of solvation -82.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds