Wall clock time and date at job start Tue Mar 31 2020 18:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00009 * 2 1 4 4 H 1.48499 * 109.46837 * 239.99819 * 3 2 1 5 5 H 1.48491 * 109.47299 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46753 * 120.00030 * 3 2 1 7 7 C 1.38810 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00108 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64733 * 359.97134 * 9 7 2 11 11 C 1.54330 * 107.27042 * 179.00034 * 10 9 7 12 12 C 1.55155 * 102.94138 * 337.80225 * 11 10 9 13 13 H 1.08990 * 111.00743 * 277.39304 * 12 11 10 14 14 N 1.46902 * 111.00108 * 153.57545 * 12 11 10 15 15 C 1.46901 * 110.99744 * 61.63639 * 14 12 11 16 16 C 1.53236 * 109.33902 * 187.25236 * 15 14 12 17 17 N 1.47076 * 108.52224 * 306.16721 * 16 15 14 18 18 C 1.34777 * 120.88481 * 231.19024 * 17 16 15 19 19 O 1.21288 * 119.99849 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.00143 * 179.97438 * 18 17 16 21 21 C 1.50701 * 109.47098 * 179.97438 * 20 18 17 22 22 C 1.39871 * 125.89914 * 124.99586 * 21 20 18 23 23 C 1.35320 * 107.92127 * 179.97438 * 22 21 20 24 24 N 1.34949 * 107.74131 * 0.23346 * 23 22 21 25 25 H 0.97006 * 126.03401 * 179.77019 * 24 23 22 26 26 N 1.30835 * 125.90132 * 304.95779 * 21 20 18 27 27 C 1.47079 * 118.23683 * 51.45588 * 17 16 15 28 28 C 1.46899 * 110.99911 * 185.93180 * 14 12 11 29 29 C 1.47468 * 125.63271 * 179.97438 * 9 7 2 30 30 H 0.97004 * 120.00077 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.88626 * 59.58281 * 10 9 7 32 32 H 1.09004 * 109.88171 * 298.41317 * 10 9 7 33 33 H 1.09002 * 110.71475 * 219.44374 * 11 10 9 34 34 H 1.08994 * 110.71977 * 96.17300 * 11 10 9 35 35 H 1.08998 * 109.49417 * 67.28886 * 15 14 12 36 36 H 1.09008 * 109.49131 * 307.20635 * 15 14 12 37 37 H 1.08995 * 109.63120 * 186.45725 * 16 15 14 38 38 H 1.08997 * 109.63036 * 65.87471 * 16 15 14 39 39 H 1.08999 * 109.47218 * 59.99790 * 20 18 17 40 40 H 1.09002 * 109.47210 * 299.99443 * 20 18 17 41 41 H 1.08004 * 126.04251 * 359.97438 * 22 21 20 42 42 H 1.07998 * 126.13018 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.62815 * 68.25494 * 27 17 16 44 44 H 1.09002 * 109.62937 * 188.83283 * 27 17 16 45 45 H 1.09000 * 109.49213 * 292.71132 * 28 14 12 46 46 H 1.09001 * 109.48876 * 52.79041 * 28 14 12 47 47 H 1.08996 * 110.35197 * 85.22571 * 29 9 7 48 48 H 1.09004 * 110.40484 * 322.89117 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5327 0.0006 11 6 -0.4485 -4.0442 -0.0251 12 6 0.8519 -4.6565 -0.6095 13 1 0.8566 -4.5980 -1.6978 14 7 1.0295 -6.0433 -0.1587 15 6 -0.0776 -6.8923 -0.6186 16 6 0.0482 -8.2800 0.0191 17 7 1.3928 -8.8041 -0.2641 18 6 1.5593 -10.0332 -0.7916 19 8 0.5929 -10.7230 -1.0387 20 6 2.9463 -10.5502 -1.0744 21 6 2.8563 -11.9375 -1.6562 22 6 3.4157 -12.3566 -2.8677 23 6 3.1151 -13.6654 -3.0345 24 7 2.3866 -14.0590 -1.9689 25 1 2.0284 -14.9481 -1.8195 26 7 2.2420 -12.9580 -1.1151 27 6 2.5514 -7.9539 0.0491 28 6 2.3268 -6.5767 -0.5952 29 6 1.9340 -3.7314 0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5576 -2.0528 -0.8833 32 1 -0.5544 -2.0838 0.9022 33 1 -1.2985 -4.2519 -0.6751 34 1 -0.6318 -4.4174 0.9824 35 1 -0.0378 -6.9857 -1.7039 36 1 -1.0266 -6.4424 -0.3264 37 1 -0.7018 -8.9473 -0.4053 38 1 -0.0949 -8.2020 1.0968 39 1 3.5183 -10.5820 -0.1471 40 1 3.4426 -9.8893 -1.7850 41 1 3.9868 -11.7439 -3.5496 42 1 3.4026 -14.2830 -3.8725 43 1 2.6443 -7.8452 1.1297 44 1 3.4571 -8.4056 -0.3555 45 1 2.3331 -6.6745 -1.6808 46 1 3.1217 -5.8979 -0.2861 47 1 2.1679 -4.0416 1.0189 48 1 2.8330 -3.7414 -0.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046018416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:54 Heat of formation + Delta-G solvation = 88.674295 kcal Electronic energy + Delta-G solvation = -28582.153439 eV Core-core repulsion = 24674.982236 eV Total energy + Delta-G solvation = -3907.171204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46689 -40.16920 -38.49840 -36.60359 -34.23260 -33.31137 -31.96331 -31.35237 -30.19944 -29.49215 -28.71297 -27.76933 -25.84134 -24.19538 -23.54077 -22.18297 -21.52458 -20.27542 -19.89421 -19.62588 -18.78625 -18.39717 -17.36848 -16.83893 -15.99670 -15.75813 -15.51818 -14.82297 -14.79616 -14.55052 -14.51337 -14.34933 -13.99527 -13.81152 -13.49326 -13.30972 -13.06694 -12.82014 -12.46581 -12.33823 -12.20122 -12.01505 -11.78889 -11.54859 -11.30288 -11.18160 -10.89004 -10.86260 -10.78965 -10.14721 -10.09199 -10.01183 -9.93615 -9.91514 -9.64983 -9.59522 -8.99519 -8.79786 -8.57744 -8.12424 -6.80939 -5.69080 -3.02714 1.65200 2.39614 2.55309 2.61351 2.95064 3.41602 3.45574 3.47150 3.95842 4.25242 4.34259 4.52766 4.59451 4.83141 4.84177 4.90742 5.07448 5.09194 5.16642 5.30810 5.32817 5.38587 5.45293 5.47904 5.54096 5.64531 5.67461 5.69786 5.74784 5.83660 5.86244 5.89852 6.02825 6.29503 6.30553 6.38644 6.50571 6.54351 6.66677 6.76633 7.00031 7.20619 7.26069 7.41623 7.43624 7.57567 7.66434 7.84736 8.08679 8.28220 9.23918 9.84423 10.50588 11.42481 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032890 B = 0.002022 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.120387 B =13843.792887 C =14375.513881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.179 3.821 11 C -0.134 4.134 12 C 0.068 3.932 13 H 0.046 0.954 14 N -0.526 5.526 15 C 0.043 3.957 16 C 0.119 3.881 17 N -0.614 5.614 18 C 0.518 3.482 19 O -0.529 6.529 20 C -0.060 4.060 21 C 0.086 3.914 22 C -0.266 4.266 23 C 0.053 3.947 24 N -0.478 5.478 25 H 0.438 0.562 26 N -0.262 5.262 27 C 0.111 3.889 28 C 0.039 3.961 29 C 0.149 3.851 30 H 0.252 0.748 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.148 0.852 42 H 0.176 0.824 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.036 0.964 46 H 0.093 0.907 47 H 0.030 0.970 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.600 -25.789 -4.375 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.173 4.173 12 C -0.041 4.041 13 H 0.064 0.936 14 N -0.251 5.251 15 C -0.086 4.086 16 C -0.003 4.003 17 N -0.349 5.349 18 C 0.305 3.695 19 O -0.405 6.405 20 C -0.101 4.101 21 C -0.082 4.082 22 C -0.296 4.296 23 C -0.094 4.094 24 N -0.186 5.186 25 H 0.282 0.718 26 N -0.085 5.085 27 C -0.012 4.012 28 C -0.090 4.090 29 C 0.022 3.978 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.166 0.834 42 H 0.193 0.807 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.054 0.946 46 H 0.111 0.889 47 H 0.047 0.953 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.338 -26.327 -3.029 27.033 hybrid contribution 0.797 0.800 -1.654 2.002 sum 6.136 -25.527 -4.683 26.668 Atomic orbital electron populations 1.69956 1.04871 1.25109 1.57034 1.24809 0.95733 0.97667 1.02330 0.86193 0.78433 0.83222 0.77864 1.21223 1.21629 1.21165 1.18994 0.90372 0.82374 1.43845 0.90519 1.44417 1.01768 0.99788 1.87280 1.21131 0.84338 0.88067 1.01036 1.22933 0.95098 0.99144 1.00108 1.22877 0.98701 0.85749 0.96763 0.93613 1.61970 1.01145 1.02097 1.59915 1.22454 0.95971 0.92783 0.97426 1.21706 0.83842 0.93908 1.00867 1.48185 1.08064 1.15560 1.63074 1.20334 0.91162 0.80907 0.77103 1.90728 1.41809 1.56197 1.51750 1.20073 0.96118 0.90793 1.03165 1.21568 0.97428 0.94479 0.94744 1.21406 1.12119 0.95603 1.00441 1.22557 0.96586 0.96814 0.93423 1.46388 1.43415 1.12126 1.16702 0.71821 1.77400 1.21609 0.93515 1.16022 1.22030 0.87760 0.90037 1.01404 1.22561 0.93399 0.95456 0.97596 1.21472 0.93348 0.85657 0.97331 0.93726 0.93760 0.93819 0.92691 0.91440 0.94784 0.89179 0.89004 0.90693 0.87141 0.86874 0.83421 0.80724 0.90107 0.89531 0.94559 0.88910 0.95267 0.94893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 10.31 55.49 0.57 -26.56 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.61 -15.42 3.40 -170.05 -0.58 -16.00 16 10 C 0.18 4.36 5.37 -3.06 -0.02 4.34 16 11 C -0.13 -2.49 5.32 -24.89 -0.13 -2.63 16 12 C 0.07 1.17 2.71 -65.58 -0.18 0.99 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 N -0.53 -7.32 4.53 -223.50 -1.01 -8.34 16 15 C 0.04 0.54 5.48 -3.70 -0.02 0.52 16 16 C 0.12 1.42 6.60 -3.61 -0.02 1.40 16 17 N -0.61 -6.87 3.00 -172.19 -0.52 -7.39 16 18 C 0.52 6.36 7.70 -10.99 -0.08 6.28 16 19 O -0.53 -8.66 15.02 5.55 0.08 -8.57 16 20 C -0.06 -0.53 4.64 -29.04 -0.13 -0.66 16 21 C 0.09 0.93 6.01 -82.41 -0.50 0.44 16 22 C -0.27 -2.29 10.72 -40.01 -0.43 -2.72 16 23 C 0.05 0.37 11.99 -17.22 -0.21 0.16 16 24 N -0.48 -4.06 7.36 30.45 0.22 -3.83 16 25 H 0.44 2.28 8.96 -182.61 -1.64 0.64 16 26 N -0.26 -3.25 12.05 33.67 0.41 -2.85 16 27 C 0.11 1.00 6.53 -3.37 -0.02 0.98 16 28 C 0.04 0.44 5.50 -3.46 -0.02 0.42 16 29 C 0.15 3.00 5.66 -2.52 -0.01 2.99 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.04 1.19 7.38 -51.93 -0.38 0.81 16 32 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 33 H 0.05 0.93 7.94 -51.93 -0.41 0.52 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 1.13 6.85 -51.92 -0.36 0.78 16 37 H 0.09 1.17 7.06 -51.93 -0.37 0.80 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.11 0.76 7.99 -51.93 -0.41 0.34 16 40 H 0.11 0.70 7.65 -51.93 -0.40 0.30 16 41 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.09 0.52 6.02 -51.93 -0.31 0.21 16 45 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 1.06 6.81 -51.93 -0.35 0.70 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.03 0.64 7.85 -51.93 -0.41 0.23 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -36.24 377.80 -10.96 -47.20 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -8.78 Total: -2.05 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -2.03 Total: 5.68 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -0.90 Total: -64.97 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.57 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.24 -10.96 -47.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046018416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.873 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds