Wall clock time and date at job start Tue Mar 31 2020 18:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00009 * 2 1 4 4 H 1.48499 * 109.46837 * 239.99819 * 3 2 1 5 5 H 1.48491 * 109.47299 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46753 * 120.00030 * 3 2 1 7 7 C 1.38810 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00108 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64733 * 359.97134 * 9 7 2 11 11 C 1.54330 * 107.27042 * 179.00034 * 10 9 7 12 12 C 1.55155 * 102.94138 * 337.80225 * 11 10 9 13 13 H 1.08990 * 111.00743 * 277.39304 * 12 11 10 14 14 N 1.46902 * 111.00108 * 153.57545 * 12 11 10 15 15 C 1.46901 * 110.99744 * 61.63639 * 14 12 11 16 16 C 1.53236 * 109.33902 * 187.25236 * 15 14 12 17 17 N 1.47076 * 108.52224 * 306.16721 * 16 15 14 18 18 C 1.34777 * 120.88481 * 231.19024 * 17 16 15 19 19 O 1.21288 * 119.99849 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.00143 * 179.97438 * 18 17 16 21 21 C 1.50701 * 109.47098 * 179.97438 * 20 18 17 22 22 C 1.39871 * 125.89914 * 124.99586 * 21 20 18 23 23 C 1.35320 * 107.92127 * 179.97438 * 22 21 20 24 24 N 1.34949 * 107.74131 * 0.23346 * 23 22 21 25 25 H 0.97006 * 126.03401 * 179.77019 * 24 23 22 26 26 N 1.30835 * 125.90132 * 304.95779 * 21 20 18 27 27 C 1.47079 * 118.23683 * 51.45588 * 17 16 15 28 28 C 1.46899 * 110.99911 * 185.93180 * 14 12 11 29 29 C 1.47468 * 125.63271 * 179.97438 * 9 7 2 30 30 H 0.97004 * 120.00077 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.88626 * 59.58281 * 10 9 7 32 32 H 1.09004 * 109.88171 * 298.41317 * 10 9 7 33 33 H 1.09002 * 110.71475 * 219.44374 * 11 10 9 34 34 H 1.08994 * 110.71977 * 96.17300 * 11 10 9 35 35 H 1.08998 * 109.49417 * 67.28886 * 15 14 12 36 36 H 1.09008 * 109.49131 * 307.20635 * 15 14 12 37 37 H 1.08995 * 109.63120 * 186.45725 * 16 15 14 38 38 H 1.08997 * 109.63036 * 65.87471 * 16 15 14 39 39 H 1.08999 * 109.47218 * 59.99790 * 20 18 17 40 40 H 1.09002 * 109.47210 * 299.99443 * 20 18 17 41 41 H 1.08004 * 126.04251 * 359.97438 * 22 21 20 42 42 H 1.07998 * 126.13018 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.62815 * 68.25494 * 27 17 16 44 44 H 1.09002 * 109.62937 * 188.83283 * 27 17 16 45 45 H 1.09000 * 109.49213 * 292.71132 * 28 14 12 46 46 H 1.09001 * 109.48876 * 52.79041 * 28 14 12 47 47 H 1.08996 * 110.35197 * 85.22571 * 29 9 7 48 48 H 1.09004 * 110.40484 * 322.89117 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1375 -2.5327 0.0006 11 6 -0.4485 -4.0442 -0.0251 12 6 0.8519 -4.6565 -0.6095 13 1 0.8566 -4.5980 -1.6978 14 7 1.0295 -6.0433 -0.1587 15 6 -0.0776 -6.8923 -0.6186 16 6 0.0482 -8.2800 0.0191 17 7 1.3928 -8.8041 -0.2641 18 6 1.5593 -10.0332 -0.7916 19 8 0.5929 -10.7230 -1.0387 20 6 2.9463 -10.5502 -1.0744 21 6 2.8563 -11.9375 -1.6562 22 6 3.4157 -12.3566 -2.8677 23 6 3.1151 -13.6654 -3.0345 24 7 2.3866 -14.0590 -1.9689 25 1 2.0284 -14.9481 -1.8195 26 7 2.2420 -12.9580 -1.1151 27 6 2.5514 -7.9539 0.0491 28 6 2.3268 -6.5767 -0.5952 29 6 1.9340 -3.7314 0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5576 -2.0528 -0.8833 32 1 -0.5544 -2.0838 0.9022 33 1 -1.2985 -4.2519 -0.6751 34 1 -0.6318 -4.4174 0.9824 35 1 -0.0378 -6.9857 -1.7039 36 1 -1.0266 -6.4424 -0.3264 37 1 -0.7018 -8.9473 -0.4053 38 1 -0.0949 -8.2020 1.0968 39 1 3.5183 -10.5820 -0.1471 40 1 3.4426 -9.8893 -1.7850 41 1 3.9868 -11.7439 -3.5496 42 1 3.4026 -14.2830 -3.8725 43 1 2.6443 -7.8452 1.1297 44 1 3.4571 -8.4056 -0.3555 45 1 2.3331 -6.6745 -1.6808 46 1 3.1217 -5.8979 -0.2861 47 1 2.1679 -4.0416 1.0189 48 1 2.8330 -3.7414 -0.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046018416.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:54 Heat of formation + Delta-G solvation = 62.136994 kcal Electronic energy + Delta-G solvation = -28583.304183 eV Core-core repulsion = 24674.982236 eV Total energy + Delta-G solvation = -3908.321948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10228 -41.11150 -39.78669 -37.99782 -35.55423 -34.10785 -33.69545 -32.27386 -31.10215 -30.80063 -29.75881 -29.11379 -27.25512 -25.84525 -24.63879 -23.03619 -22.25100 -21.74263 -21.29269 -20.79126 -19.63314 -18.98475 -18.87712 -18.21691 -17.07819 -16.81281 -16.65258 -16.39020 -15.97755 -15.83553 -15.50246 -15.37155 -15.00282 -14.67769 -14.38140 -14.34725 -14.18864 -13.98165 -13.84914 -13.69770 -13.46038 -13.19017 -12.94209 -12.89366 -12.68380 -12.51353 -12.36963 -12.23099 -12.01360 -11.77476 -11.65528 -11.55846 -11.54330 -11.45325 -10.85034 -10.67349 -10.31651 -9.77258 -9.58527 -9.23568 -8.87277 -7.82019 -5.17899 1.05349 1.47851 1.51480 1.57603 1.66022 1.73903 2.07237 2.18181 2.50664 2.84727 3.36835 3.54523 3.68407 3.70867 3.86361 3.96472 4.05643 4.11564 4.13353 4.29176 4.30534 4.35670 4.41305 4.46265 4.54479 4.56643 4.66884 4.76515 4.78133 4.83393 4.90065 4.92191 4.95013 5.00994 5.06524 5.12631 5.15976 5.25021 5.47658 5.48851 5.67569 5.72802 5.77511 6.06124 6.14283 6.23932 6.45811 6.53766 6.80730 7.12388 7.20216 7.80304 8.44973 9.28311 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032890 B = 0.002022 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.120387 B =13843.792887 C =14375.513881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.240 4.240 8 H 0.086 0.914 9 N -0.629 5.629 10 C 0.187 3.813 11 C -0.118 4.118 12 C 0.088 3.912 13 H 0.039 0.961 14 N -0.527 5.527 15 C 0.049 3.951 16 C 0.124 3.876 17 N -0.613 5.613 18 C 0.515 3.485 19 O -0.577 6.577 20 C -0.056 4.056 21 C 0.067 3.933 22 C -0.287 4.287 23 C 0.065 3.935 24 N -0.479 5.479 25 H 0.448 0.552 26 N -0.319 5.319 27 C 0.115 3.885 28 C 0.035 3.965 29 C 0.149 3.851 30 H 0.246 0.754 31 H 0.009 0.991 32 H 0.006 0.994 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.169 0.831 42 H 0.218 0.782 43 H 0.087 0.913 44 H 0.125 0.875 45 H 0.038 0.962 46 H 0.096 0.904 47 H 0.033 0.967 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.060 -27.335 -5.103 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.355 5.355 10 C 0.061 3.939 11 C -0.157 4.157 12 C -0.021 4.021 13 H 0.057 0.943 14 N -0.252 5.252 15 C -0.080 4.080 16 C 0.001 3.999 17 N -0.347 5.347 18 C 0.303 3.697 19 O -0.457 6.457 20 C -0.097 4.097 21 C -0.100 4.100 22 C -0.316 4.316 23 C -0.082 4.082 24 N -0.188 5.188 25 H 0.294 0.706 26 N -0.143 5.143 27 C -0.007 4.007 28 C -0.093 4.093 29 C 0.023 3.977 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.024 0.976 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.186 0.814 42 H 0.234 0.766 43 H 0.105 0.895 44 H 0.143 0.857 45 H 0.056 0.944 46 H 0.115 0.885 47 H 0.051 0.949 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.843 -27.904 -3.743 29.226 hybrid contribution 0.054 1.194 -1.443 1.874 sum 7.897 -26.710 -5.186 28.331 Atomic orbital electron populations 1.70193 1.06369 1.25267 1.58402 1.25698 0.96642 1.01178 1.02793 0.85125 0.77078 0.78665 0.78302 1.20141 1.22313 1.20208 1.19439 0.91088 0.83582 1.42798 0.89662 1.44746 1.02449 1.01241 1.87093 1.20871 0.83969 0.91479 0.97539 1.22736 0.96673 0.94989 1.01282 1.22514 0.96314 0.87360 0.95927 0.94276 1.61934 1.02811 1.00510 1.59979 1.22411 0.95573 0.92906 0.97096 1.21568 0.84506 0.93019 1.00843 1.48287 1.08286 1.15639 1.62487 1.20966 0.92079 0.80566 0.76040 1.90707 1.43659 1.57509 1.53793 1.20212 0.94058 0.90435 1.04982 1.22013 0.97374 0.94912 0.95671 1.21795 1.12910 0.96659 1.00271 1.23269 0.94586 0.96928 0.93456 1.46459 1.43507 1.12096 1.16765 0.70637 1.77304 1.23693 0.95021 1.18309 1.22194 0.88256 0.88416 1.01852 1.22692 0.91860 0.96768 0.97983 1.21587 0.94382 0.83853 0.97829 0.94507 0.97310 0.97584 0.90830 0.90613 0.95307 0.89166 0.90140 0.90314 0.85003 0.83788 0.81381 0.76588 0.89501 0.85726 0.94381 0.88534 0.94932 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.00 10.31 21.65 0.22 -57.77 16 2 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 3 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.24 -13.41 10.28 84.03 0.86 -12.55 16 8 H 0.09 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.63 -32.30 3.40 -691.91 -2.35 -34.65 16 10 C 0.19 9.37 5.37 86.73 0.47 9.83 16 11 C -0.12 -4.35 5.32 31.78 0.17 -4.18 16 12 C 0.09 2.91 2.71 46.30 0.13 3.04 16 13 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 14 N -0.53 -13.56 4.53 -861.02 -3.90 -17.46 16 15 C 0.05 1.16 5.48 86.38 0.47 1.64 16 16 C 0.12 2.80 6.60 86.35 0.57 3.37 16 17 N -0.61 -12.42 3.00 -817.07 -2.45 -14.87 16 18 C 0.51 11.85 7.70 87.66 0.67 12.53 16 19 O -0.58 -18.88 15.02 -3.05 -0.05 -18.93 16 20 C -0.06 -0.84 4.64 29.10 0.14 -0.70 16 21 C 0.07 1.36 6.01 43.10 0.26 1.62 16 22 C -0.29 -4.26 10.72 21.99 0.24 -4.03 16 23 C 0.07 0.74 11.99 83.54 1.00 1.75 16 24 N -0.48 -7.58 7.36 -57.59 -0.42 -8.00 16 25 H 0.45 4.28 8.96 -213.33 -1.91 2.37 16 26 N -0.32 -7.75 12.05 -47.38 -0.57 -8.32 16 27 C 0.11 1.67 6.53 86.50 0.57 2.24 16 28 C 0.04 0.70 5.50 86.54 0.48 1.18 16 29 C 0.15 5.85 5.66 86.84 0.49 6.34 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.01 0.49 7.38 -2.39 -0.02 0.47 16 32 H 0.01 0.34 7.50 -2.38 -0.02 0.32 16 33 H 0.07 2.43 7.94 -2.39 -0.02 2.41 16 34 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 2.14 6.85 -2.38 -0.02 2.13 16 37 H 0.08 2.04 7.06 -2.39 -0.02 2.02 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.13 1.37 7.99 -2.39 -0.02 1.36 16 40 H 0.14 1.19 7.65 -2.39 -0.02 1.17 16 41 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.22 0.38 8.06 -2.91 -0.02 0.36 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.12 0.90 6.02 -2.39 -0.01 0.89 16 45 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.10 1.88 6.81 -2.39 -0.02 1.87 16 47 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.04 1.62 7.85 -2.38 -0.02 1.60 16 Total: -1.00 -82.39 377.80 -1.46 -83.85 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -0.94 Total: 9.90 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 6.97 Total: 18.50 kcal Atomic # 7 Polarization: -131.61 SS G_CDS: -9.47 Total: -141.08 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.05 Total: -18.93 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -82.39 -1.46 -83.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046018416.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.985 kcal (2) G-P(sol) polarization free energy of solvation -82.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds