Wall clock time and date at job start Tue Mar 31 2020 18:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00229 * 2 1 4 4 H 1.48498 * 109.47218 * 265.20188 * 3 2 1 5 5 H 1.48496 * 109.46975 * 145.19901 * 3 2 1 6 6 H 1.48504 * 109.46647 * 25.20467 * 3 2 1 7 7 C 1.38821 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99792 * 332.99854 * 7 2 1 9 9 N 1.36933 * 119.99955 * 152.99771 * 7 2 1 10 10 C 1.47024 * 125.64785 * 349.69911 * 9 7 2 11 11 C 1.54322 * 107.27070 * 181.02509 * 10 9 7 12 12 C 1.55159 * 102.94404 * 22.19329 * 11 10 9 13 13 H 1.09000 * 111.00551 * 82.57085 * 12 11 10 14 14 N 1.46894 * 111.00716 * 206.42473 * 12 11 10 15 15 C 1.46896 * 110.99984 * 304.30123 * 14 12 11 16 16 C 1.53243 * 109.34108 * 172.74492 * 15 14 12 17 17 N 1.47081 * 108.52224 * 53.83143 * 16 15 14 18 18 C 1.34770 * 120.88323 * 128.79277 * 17 16 15 19 19 O 1.21276 * 119.99825 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00029 * 0.02562 * 18 17 16 21 21 C 1.50700 * 109.47118 * 180.02562 * 20 18 17 22 22 C 1.39872 * 125.90214 * 124.99842 * 21 20 18 23 23 C 1.35315 * 107.92443 * 179.97438 * 22 21 20 24 24 N 1.34956 * 107.74236 * 0.02562 * 23 22 21 25 25 H 0.96996 * 126.03176 * 179.97438 * 24 23 22 26 26 N 1.30834 * 125.89643 * 304.68947 * 21 20 18 27 27 C 1.47080 * 118.23391 * 308.81590 * 17 16 15 28 28 C 1.46896 * 111.00245 * 179.97438 * 14 12 11 29 29 C 1.47425 * 125.64812 * 169.39265 * 9 7 2 30 30 H 0.97002 * 120.00332 * 185.05313 * 1 2 3 31 31 H 1.09007 * 109.88407 * 300.44052 * 10 9 7 32 32 H 1.09002 * 109.88260 * 61.60641 * 10 9 7 33 33 H 1.09006 * 110.72452 * 140.55543 * 11 10 9 34 34 H 1.08999 * 110.72029 * 263.82694 * 11 10 9 35 35 H 1.08999 * 109.49746 * 292.70637 * 15 14 12 36 36 H 1.09000 * 109.49590 * 52.78858 * 15 14 12 37 37 H 1.09004 * 109.63044 * 294.11816 * 16 15 14 38 38 H 1.09003 * 109.78930 * 173.63254 * 16 15 14 39 39 H 1.09002 * 109.47147 * 299.99931 * 20 18 17 40 40 H 1.08997 * 109.47532 * 59.99871 * 20 18 17 41 41 H 1.08005 * 126.03540 * 0.02562 * 22 21 20 42 42 H 1.08001 * 126.12994 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.62558 * 291.47416 * 27 17 16 44 44 H 1.09000 * 109.79075 * 170.99073 * 27 17 16 45 45 H 1.09004 * 109.49369 * 307.21405 * 28 14 12 46 46 H 1.09001 * 109.49599 * 67.26423 * 28 14 12 47 47 H 1.08998 * 110.36628 * 274.74171 * 29 9 7 48 48 H 1.09000 * 110.36661 * 37.07298 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5992 1.9879 -1.3951 5 1 3.4933 1.4715 0.7990 6 1 1.4006 2.6798 0.5963 7 6 2.0102 -1.2022 0.0005 8 1 1.5585 -2.0863 0.4256 9 7 3.2676 -1.2671 -0.5379 10 6 3.9149 -0.2129 -1.3324 11 6 5.3063 -0.7385 -1.7439 12 6 5.1422 -2.2776 -1.6366 13 1 4.6778 -2.6846 -2.5348 14 7 6.4328 -2.9277 -1.3730 15 6 7.4225 -2.5676 -2.3971 16 6 8.7951 -3.1146 -1.9909 17 7 8.6653 -4.5565 -1.7314 18 6 9.4974 -5.4420 -2.3145 19 8 9.3756 -6.6275 -2.0895 20 6 10.5790 -4.9591 -3.2460 21 6 11.3633 -6.1389 -3.7597 22 6 11.5813 -6.4561 -5.1044 23 6 12.3285 -7.5833 -5.1506 24 7 12.5742 -7.9662 -3.8800 25 1 13.0868 -8.7431 -3.6072 26 7 11.9625 -7.0404 -3.0248 27 6 7.6030 -5.0064 -0.8191 28 6 6.2773 -4.3848 -1.2708 29 6 4.1989 -2.4029 -0.4114 30 1 -0.4851 -0.8368 0.0740 31 1 3.3208 -0.0012 -2.2215 32 1 4.0225 0.6905 -0.7322 33 1 5.5419 -0.4462 -2.7673 34 1 6.0721 -0.3832 -1.0543 35 1 7.1284 -2.9976 -3.3544 36 1 7.4754 -1.4825 -2.4862 37 1 9.1381 -2.6095 -1.0879 38 1 9.5109 -2.9506 -2.7965 39 1 10.1266 -4.4308 -4.0853 40 1 11.2463 -4.2846 -2.7094 41 1 11.2181 -5.8992 -5.9556 42 1 12.6676 -8.0864 -6.0441 43 1 7.8314 -4.6831 0.1965 44 1 7.5268 -6.0934 -0.8489 45 1 5.4996 -4.6175 -0.5433 46 1 5.9982 -4.7900 -2.2435 47 1 4.7660 -2.3270 0.5163 48 1 3.6539 -3.3462 -0.4478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046018420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:58 Heat of formation + Delta-G solvation = 93.591144 kcal Electronic energy + Delta-G solvation = -28669.610869 eV Core-core repulsion = 24762.652875 eV Total energy + Delta-G solvation = -3906.957993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51283 -40.26912 -38.70593 -36.87641 -34.37437 -33.37905 -32.23124 -31.46440 -30.24350 -29.61491 -29.17992 -28.06871 -26.14509 -24.09066 -23.25640 -22.27971 -21.59704 -20.48969 -20.29765 -19.77744 -18.86866 -18.44057 -17.51508 -17.32673 -16.12507 -15.85770 -15.75125 -15.24221 -14.96344 -14.84587 -14.59172 -14.23319 -14.02485 -13.85689 -13.64853 -13.40374 -13.27776 -13.04608 -12.76013 -12.52963 -12.36134 -12.26883 -12.16008 -11.68734 -11.45081 -11.23055 -11.02222 -10.96857 -10.92915 -10.59504 -10.31718 -10.22699 -10.00636 -9.65001 -9.52466 -9.14364 -9.03951 -8.88797 -8.40904 -8.26183 -7.07183 -6.30912 -3.15336 1.60955 2.34275 2.49035 2.57112 2.87565 3.43641 3.54010 3.70560 3.81484 4.19411 4.27915 4.53362 4.62161 4.71800 4.75449 4.78379 4.94937 5.02285 5.03901 5.12032 5.19355 5.22012 5.29715 5.32896 5.40296 5.45179 5.49195 5.57449 5.60372 5.64215 5.67224 5.76092 5.88018 5.93496 6.14428 6.19917 6.24321 6.31957 6.43534 6.54284 6.60675 6.81339 6.95963 7.07295 7.14357 7.27752 7.38934 7.74641 8.02257 8.36543 9.06577 9.62428 10.29240 11.17745 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.002090 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.427600 B =13393.223319 C =13732.281239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.071 2.929 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.300 1.300 7 C -0.329 4.329 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.118 3.882 11 C -0.121 4.121 12 C 0.068 3.932 13 H 0.051 0.949 14 N -0.527 5.527 15 C 0.038 3.962 16 C 0.111 3.889 17 N -0.614 5.614 18 C 0.518 3.482 19 O -0.527 6.527 20 C -0.059 4.059 21 C 0.085 3.915 22 C -0.267 4.267 23 C 0.054 3.946 24 N -0.478 5.478 25 H 0.438 0.562 26 N -0.262 5.262 27 C 0.119 3.881 28 C 0.042 3.958 29 C 0.147 3.853 30 H 0.262 0.738 31 H 0.039 0.961 32 H 0.029 0.971 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.148 0.852 42 H 0.176 0.824 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.036 0.964 47 H 0.034 0.966 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.395 -10.602 -11.406 31.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.904 3.096 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.228 1.228 7 C -0.456 4.456 8 H 0.094 0.906 9 N -0.337 5.337 10 C -0.008 4.008 11 C -0.159 4.159 12 C -0.040 4.040 13 H 0.069 0.931 14 N -0.252 5.252 15 C -0.091 4.091 16 C -0.012 4.012 17 N -0.349 5.349 18 C 0.305 3.695 19 O -0.403 6.403 20 C -0.101 4.101 21 C -0.083 4.083 22 C -0.296 4.296 23 C -0.093 4.093 24 N -0.186 5.186 25 H 0.282 0.718 26 N -0.085 5.085 27 C -0.003 4.003 28 C -0.087 4.087 29 C 0.021 3.979 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.166 0.834 42 H 0.193 0.807 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 27.454 -9.839 -9.689 30.731 hybrid contribution -0.039 -2.030 -1.482 2.514 sum 27.414 -11.869 -11.171 31.893 Atomic orbital electron populations 1.70923 1.05824 1.29944 1.49267 1.25805 0.96332 1.00870 0.99188 0.83697 0.73743 0.75932 0.76181 1.22191 1.22078 1.22828 1.20014 0.88988 0.97181 1.39439 0.90635 1.44760 1.14292 1.14298 1.60382 1.21637 0.91456 0.92691 0.94994 1.22638 0.98330 0.94202 1.00706 1.22910 0.88248 0.94313 0.98560 0.93067 1.61925 1.08890 1.07947 1.46399 1.22484 0.91809 1.01519 0.93244 1.21917 0.97302 0.79973 1.02029 1.48171 1.32921 1.07056 1.46784 1.20338 0.82272 0.86129 0.80781 1.90734 1.71239 1.16185 1.62103 1.20066 0.95409 0.94804 0.99812 1.21558 0.98399 0.96129 0.92197 1.21398 1.09911 1.01494 0.96799 1.22563 1.00109 0.97409 0.89237 1.46393 1.43895 1.24157 1.04151 0.71790 1.77403 1.13490 1.01345 1.16299 1.21697 0.85353 1.00285 0.92985 1.22479 0.97491 0.87708 1.00979 1.21522 0.90172 0.91905 0.94310 0.92757 0.94304 0.95356 0.91725 0.90522 0.94506 0.88979 0.90180 0.89480 0.86921 0.87153 0.83433 0.80699 0.90612 0.88862 0.89022 0.94562 0.94859 0.94274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.93 13.70 55.49 0.76 -28.17 16 2 C -0.02 -0.63 5.43 -17.43 -0.09 -0.73 16 3 Si 1.07 27.06 24.66 -169.99 -4.19 22.87 16 4 H -0.29 -6.96 6.76 56.52 0.38 -6.57 16 5 H -0.29 -7.10 6.71 56.52 0.38 -6.72 16 6 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 7 C -0.33 -9.52 10.43 -15.06 -0.16 -9.67 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 N -0.61 -15.07 3.29 -169.92 -0.56 -15.63 16 10 C 0.12 2.55 4.94 -3.06 -0.02 2.54 16 11 C -0.12 -1.94 5.03 -24.90 -0.13 -2.06 16 12 C 0.07 1.09 2.73 -65.44 -0.18 0.91 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 N -0.53 -6.79 4.52 -223.64 -1.01 -7.80 16 15 C 0.04 0.38 5.43 -3.70 -0.02 0.36 16 16 C 0.11 0.88 6.51 -3.60 -0.02 0.86 16 17 N -0.61 -6.46 3.01 -172.46 -0.52 -6.98 16 18 C 0.52 6.08 7.70 -10.99 -0.08 5.99 16 19 O -0.53 -8.43 15.03 5.56 0.08 -8.34 16 20 C -0.06 -0.49 4.64 -29.04 -0.13 -0.62 16 21 C 0.09 0.89 6.01 -82.41 -0.50 0.39 16 22 C -0.27 -2.18 10.72 -40.01 -0.43 -2.60 16 23 C 0.05 0.36 11.99 -17.22 -0.21 0.15 16 24 N -0.48 -3.91 7.36 30.45 0.22 -3.68 16 25 H 0.44 2.16 8.96 -182.61 -1.64 0.53 16 26 N -0.26 -3.16 12.06 33.67 0.41 -2.75 16 27 C 0.12 1.37 6.59 -3.60 -0.02 1.35 16 28 C 0.04 0.52 5.52 -3.70 -0.02 0.50 16 29 C 0.15 2.96 5.95 -2.41 -0.01 2.94 16 30 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 31 H 0.04 0.88 7.83 -51.92 -0.41 0.48 16 32 H 0.03 0.66 3.77 -51.93 -0.20 0.46 16 33 H 0.06 0.87 7.96 -51.93 -0.41 0.45 16 34 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.83 6.64 -51.93 -0.34 0.49 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.43 6.02 -51.93 -0.31 0.12 16 39 H 0.11 0.61 7.64 -51.93 -0.40 0.21 16 40 H 0.11 0.69 8.00 -51.93 -0.42 0.27 16 41 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.18 0.44 8.06 -52.49 -0.42 0.01 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.16 7.07 -51.93 -0.37 0.80 16 45 H 0.09 1.17 7.05 -51.93 -0.37 0.81 16 46 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -38.02 372.49 -9.90 -47.92 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -8.68 Total: -3.35 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.02 Total: 0.31 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -0.70 Total: -65.02 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.08 Total: -8.34 kcal Atomic # 14 Polarization: 27.06 SS G_CDS: -4.19 Total: 22.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.02 -9.90 -47.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046018420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.514 kcal (2) G-P(sol) polarization free energy of solvation -38.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds