Wall clock time and date at job start Tue Mar 31 2020 18:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00229 * 2 1 4 4 H 1.48498 * 109.47218 * 265.20188 * 3 2 1 5 5 H 1.48496 * 109.46975 * 145.19901 * 3 2 1 6 6 H 1.48504 * 109.46647 * 25.20467 * 3 2 1 7 7 C 1.38821 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99792 * 332.99854 * 7 2 1 9 9 N 1.36933 * 119.99955 * 152.99771 * 7 2 1 10 10 C 1.47024 * 125.64785 * 349.69911 * 9 7 2 11 11 C 1.54322 * 107.27070 * 181.02509 * 10 9 7 12 12 C 1.55159 * 102.94404 * 22.19329 * 11 10 9 13 13 H 1.09000 * 111.00551 * 82.57085 * 12 11 10 14 14 N 1.46894 * 111.00716 * 206.42473 * 12 11 10 15 15 C 1.46896 * 110.99984 * 304.30123 * 14 12 11 16 16 C 1.53243 * 109.34108 * 172.74492 * 15 14 12 17 17 N 1.47081 * 108.52224 * 53.83143 * 16 15 14 18 18 C 1.34770 * 120.88323 * 128.79277 * 17 16 15 19 19 O 1.21276 * 119.99825 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00029 * 0.02562 * 18 17 16 21 21 C 1.50700 * 109.47118 * 180.02562 * 20 18 17 22 22 C 1.39872 * 125.90214 * 124.99842 * 21 20 18 23 23 C 1.35315 * 107.92443 * 179.97438 * 22 21 20 24 24 N 1.34956 * 107.74236 * 0.02562 * 23 22 21 25 25 H 0.96996 * 126.03176 * 179.97438 * 24 23 22 26 26 N 1.30834 * 125.89643 * 304.68947 * 21 20 18 27 27 C 1.47080 * 118.23391 * 308.81590 * 17 16 15 28 28 C 1.46896 * 111.00245 * 179.97438 * 14 12 11 29 29 C 1.47425 * 125.64812 * 169.39265 * 9 7 2 30 30 H 0.97002 * 120.00332 * 185.05313 * 1 2 3 31 31 H 1.09007 * 109.88407 * 300.44052 * 10 9 7 32 32 H 1.09002 * 109.88260 * 61.60641 * 10 9 7 33 33 H 1.09006 * 110.72452 * 140.55543 * 11 10 9 34 34 H 1.08999 * 110.72029 * 263.82694 * 11 10 9 35 35 H 1.08999 * 109.49746 * 292.70637 * 15 14 12 36 36 H 1.09000 * 109.49590 * 52.78858 * 15 14 12 37 37 H 1.09004 * 109.63044 * 294.11816 * 16 15 14 38 38 H 1.09003 * 109.78930 * 173.63254 * 16 15 14 39 39 H 1.09002 * 109.47147 * 299.99931 * 20 18 17 40 40 H 1.08997 * 109.47532 * 59.99871 * 20 18 17 41 41 H 1.08005 * 126.03540 * 0.02562 * 22 21 20 42 42 H 1.08001 * 126.12994 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.62558 * 291.47416 * 27 17 16 44 44 H 1.09000 * 109.79075 * 170.99073 * 27 17 16 45 45 H 1.09004 * 109.49369 * 307.21405 * 28 14 12 46 46 H 1.09001 * 109.49599 * 67.26423 * 28 14 12 47 47 H 1.08998 * 110.36628 * 274.74171 * 29 9 7 48 48 H 1.09000 * 110.36661 * 37.07298 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5992 1.9879 -1.3951 5 1 3.4933 1.4715 0.7990 6 1 1.4006 2.6798 0.5963 7 6 2.0102 -1.2022 0.0005 8 1 1.5585 -2.0863 0.4256 9 7 3.2676 -1.2671 -0.5379 10 6 3.9149 -0.2129 -1.3324 11 6 5.3063 -0.7385 -1.7439 12 6 5.1422 -2.2776 -1.6366 13 1 4.6778 -2.6846 -2.5348 14 7 6.4328 -2.9277 -1.3730 15 6 7.4225 -2.5676 -2.3971 16 6 8.7951 -3.1146 -1.9909 17 7 8.6653 -4.5565 -1.7314 18 6 9.4974 -5.4420 -2.3145 19 8 9.3756 -6.6275 -2.0895 20 6 10.5790 -4.9591 -3.2460 21 6 11.3633 -6.1389 -3.7597 22 6 11.5813 -6.4561 -5.1044 23 6 12.3285 -7.5833 -5.1506 24 7 12.5742 -7.9662 -3.8800 25 1 13.0868 -8.7431 -3.6072 26 7 11.9625 -7.0404 -3.0248 27 6 7.6030 -5.0064 -0.8191 28 6 6.2773 -4.3848 -1.2708 29 6 4.1989 -2.4029 -0.4114 30 1 -0.4851 -0.8368 0.0740 31 1 3.3208 -0.0012 -2.2215 32 1 4.0225 0.6905 -0.7322 33 1 5.5419 -0.4462 -2.7673 34 1 6.0721 -0.3832 -1.0543 35 1 7.1284 -2.9976 -3.3544 36 1 7.4754 -1.4825 -2.4862 37 1 9.1381 -2.6095 -1.0879 38 1 9.5109 -2.9506 -2.7965 39 1 10.1266 -4.4308 -4.0853 40 1 11.2463 -4.2846 -2.7094 41 1 11.2181 -5.8992 -5.9556 42 1 12.6676 -8.0864 -6.0441 43 1 7.8314 -4.6831 0.1965 44 1 7.5268 -6.0934 -0.8489 45 1 5.4996 -4.6175 -0.5433 46 1 5.9982 -4.7900 -2.2435 47 1 4.7660 -2.3270 0.5163 48 1 3.6539 -3.3462 -0.4478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046018420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:57 Heat of formation + Delta-G solvation = 63.553924 kcal Electronic energy + Delta-G solvation = -28670.913380 eV Core-core repulsion = 24762.652875 eV Total energy + Delta-G solvation = -3908.260505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11010 -41.15489 -39.93277 -38.16968 -35.63658 -34.29610 -33.91406 -32.36430 -31.15427 -30.80947 -30.24922 -29.20729 -27.35954 -25.46102 -24.59286 -23.09205 -22.28078 -22.15560 -21.36844 -20.83853 -19.65921 -19.50783 -18.98743 -18.29971 -17.22462 -17.00470 -16.84829 -16.54013 -15.97074 -15.77776 -15.51605 -15.42478 -15.20042 -14.96875 -14.56192 -14.40890 -14.35739 -14.20802 -13.97207 -13.78082 -13.57957 -13.22375 -12.98892 -12.96288 -12.88014 -12.57627 -12.31662 -12.23157 -12.12399 -11.79097 -11.61510 -11.55117 -11.52521 -11.05650 -10.86733 -10.57357 -10.32826 -9.80031 -9.59247 -9.27769 -9.16238 -8.64984 -5.42253 1.04647 1.40965 1.54515 1.65051 1.72459 1.73997 2.06439 2.16737 2.53169 2.71027 3.09662 3.46025 3.53459 3.62529 3.70951 3.91832 3.96465 4.04673 4.09339 4.16816 4.25100 4.32313 4.37716 4.40987 4.44079 4.52674 4.54439 4.61906 4.75130 4.76970 4.79575 4.87241 4.89830 4.90128 4.95643 5.00279 5.10058 5.14353 5.15808 5.27821 5.46398 5.57041 5.72506 6.00317 6.09140 6.12427 6.44986 6.52700 6.79987 6.83627 7.19357 7.48838 8.13787 8.83861 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.002090 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.427600 B =13393.223319 C =13732.281239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.079 4.079 3 Si 1.115 2.885 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.307 1.307 7 C -0.323 4.323 8 H 0.040 0.960 9 N -0.632 5.632 10 C 0.105 3.895 11 C -0.104 4.104 12 C 0.087 3.913 13 H 0.045 0.955 14 N -0.528 5.528 15 C 0.035 3.965 16 C 0.111 3.889 17 N -0.613 5.613 18 C 0.513 3.487 19 O -0.580 6.580 20 C -0.054 4.054 21 C 0.067 3.933 22 C -0.286 4.286 23 C 0.064 3.936 24 N -0.480 5.480 25 H 0.448 0.552 26 N -0.320 5.320 27 C 0.125 3.875 28 C 0.049 3.951 29 C 0.144 3.856 30 H 0.247 0.753 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.040 0.960 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.170 0.830 42 H 0.217 0.783 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.030 0.970 47 H 0.032 0.968 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.229 -8.967 -13.895 35.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.273 4.273 3 Si 0.942 3.058 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.235 1.235 7 C -0.451 4.451 8 H 0.058 0.942 9 N -0.360 5.360 10 C -0.020 4.020 11 C -0.142 4.142 12 C -0.022 4.022 13 H 0.063 0.937 14 N -0.253 5.253 15 C -0.093 4.093 16 C -0.011 4.011 17 N -0.347 5.347 18 C 0.302 3.698 19 O -0.459 6.459 20 C -0.095 4.095 21 C -0.100 4.100 22 C -0.315 4.315 23 C -0.083 4.083 24 N -0.189 5.189 25 H 0.293 0.707 26 N -0.145 5.145 27 C 0.002 3.998 28 C -0.080 4.080 29 C 0.018 3.982 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.145 0.855 39 H 0.165 0.835 40 H 0.151 0.849 41 H 0.188 0.812 42 H 0.234 0.766 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.050 0.950 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 31.343 -8.209 -12.196 34.619 hybrid contribution -1.229 -2.719 -0.697 3.065 sum 30.114 -10.928 -12.893 34.533 Atomic orbital electron populations 1.71041 1.07048 1.29069 1.52426 1.27148 0.96340 1.04542 0.99285 0.83138 0.72970 0.71762 0.77914 1.19126 1.20247 1.23531 1.19907 0.91055 0.95895 1.38268 0.94214 1.44858 1.13826 1.16702 1.60570 1.21867 0.94256 0.92029 0.93839 1.22613 0.95067 0.93153 1.03319 1.22562 0.88839 0.95095 0.95716 0.93673 1.61891 1.07739 1.07652 1.47998 1.22676 0.91439 1.02886 0.92309 1.22170 0.97095 0.77862 1.03932 1.48279 1.32088 1.08315 1.45989 1.21024 0.82621 0.85490 0.80634 1.90712 1.72708 1.18539 1.63924 1.20214 0.94405 0.94651 1.00223 1.22043 0.98291 0.96430 0.93249 1.21798 1.10676 1.02440 0.96628 1.23279 0.98521 0.96825 0.89705 1.46467 1.43745 1.24140 1.04558 0.70685 1.77310 1.15583 1.03082 1.18488 1.21495 0.85530 0.99307 0.93482 1.22374 0.97610 0.87770 1.00262 1.21634 0.90205 0.89781 0.96581 0.94392 0.95464 0.95633 0.87857 0.88716 0.94187 0.86965 0.89450 0.85454 0.83531 0.84869 0.81247 0.76638 0.90462 0.90506 0.90388 0.95168 0.94979 0.95749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.04 13.70 21.65 0.30 -61.74 16 2 C -0.08 -4.80 5.43 84.87 0.46 -4.34 16 3 Si 1.12 54.25 24.66 68.60 1.69 55.94 16 4 H -0.27 -11.60 6.76 99.48 0.67 -10.92 16 5 H -0.28 -12.50 6.71 99.48 0.67 -11.83 16 6 H -0.31 -15.13 7.11 99.48 0.71 -14.43 16 7 C -0.32 -19.25 10.43 84.04 0.88 -18.37 16 8 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 9 N -0.63 -31.18 3.29 -691.52 -2.27 -33.45 16 10 C 0.10 4.29 4.94 86.73 0.43 4.72 16 11 C -0.10 -2.88 5.03 31.78 0.16 -2.72 16 12 C 0.09 2.57 2.73 46.39 0.13 2.70 16 13 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 14 N -0.53 -12.13 4.52 -861.47 -3.90 -16.03 16 15 C 0.03 0.52 5.43 86.39 0.47 0.99 16 16 C 0.11 1.26 6.51 86.35 0.56 1.82 16 17 N -0.61 -11.48 3.01 -817.94 -2.46 -13.94 16 18 C 0.51 11.22 7.70 87.66 0.67 11.90 16 19 O -0.58 -18.71 15.03 -3.02 -0.05 -18.75 16 20 C -0.05 -0.72 4.64 29.10 0.14 -0.58 16 21 C 0.07 1.28 6.01 43.10 0.26 1.54 16 22 C -0.29 -3.93 10.72 21.99 0.24 -3.70 16 23 C 0.06 0.69 11.99 83.54 1.00 1.69 16 24 N -0.48 -7.34 7.36 -57.59 -0.42 -7.76 16 25 H 0.45 4.13 8.96 -213.33 -1.91 2.21 16 26 N -0.32 -7.56 12.06 -47.38 -0.57 -8.14 16 27 C 0.13 2.81 6.59 86.35 0.57 3.38 16 28 C 0.05 1.16 5.52 86.38 0.48 1.64 16 29 C 0.14 5.74 5.95 86.93 0.52 6.26 16 30 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 31 H 0.03 1.18 7.83 -2.38 -0.02 1.16 16 32 H 0.03 1.10 3.77 -2.39 -0.01 1.09 16 33 H 0.10 2.15 7.96 -2.38 -0.02 2.13 16 34 H 0.09 2.36 8.11 -2.39 -0.02 2.34 16 35 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 1.31 6.64 -2.39 -0.02 1.30 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.13 0.47 6.02 -2.39 -0.01 0.46 16 39 H 0.15 0.87 7.64 -2.39 -0.02 0.86 16 40 H 0.13 1.13 8.00 -2.39 -0.02 1.11 16 41 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 42 H 0.22 0.25 8.06 -2.91 -0.02 0.23 16 43 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 1.99 7.07 -2.39 -0.02 1.97 16 45 H 0.08 2.05 7.05 -2.38 -0.02 2.03 16 46 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 48 H 0.02 1.02 7.87 -2.39 -0.02 1.00 16 Total: -1.00 -88.53 372.49 -1.78 -90.31 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -1.05 Total: 6.64 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.95 Total: 6.92 kcal Atomic # 7 Polarization: -131.73 SS G_CDS: -9.33 Total: -141.06 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 14 Polarization: 54.25 SS G_CDS: 1.69 Total: 55.94 kcal Total: -88.53 -1.78 -90.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046018420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.861 kcal (2) G-P(sol) polarization free energy of solvation -88.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds