Wall clock time and date at job start Tue Mar 31 2020 18:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48504 * 109.46961 * 240.00063 * 3 2 1 5 5 H 1.48502 * 109.46739 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47214 * 119.99927 * 3 2 1 7 7 C 1.38814 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64638 * 359.97290 * 9 7 2 11 11 C 1.54910 * 104.83209 * 155.89300 * 10 9 7 12 12 C 1.55154 * 101.58031 * 37.01037 * 11 10 9 13 13 H 1.08995 * 110.87338 * 82.93395 * 12 11 10 14 14 N 1.46903 * 110.71882 * 206.13764 * 12 11 10 15 15 C 1.46908 * 110.99459 * 299.27400 * 14 12 11 16 16 C 1.53245 * 109.33416 * 172.74660 * 15 14 12 17 17 N 1.47081 * 108.51982 * 53.83568 * 16 15 14 18 18 C 1.34775 * 120.88167 * 128.79111 * 17 16 15 19 19 O 1.21279 * 119.99745 * 180.02562 * 18 17 16 20 20 C 1.50700 * 119.99989 * 0.02562 * 18 17 16 21 21 C 1.50699 * 109.46907 * 180.02562 * 20 18 17 22 22 C 1.34669 * 126.58884 * 274.68121 * 21 20 18 23 23 N 1.34131 * 108.02070 * 179.87696 * 22 21 20 24 24 C 1.30493 * 109.25511 * 0.40245 * 23 22 21 25 25 N 1.35051 * 108.70094 * 359.75251 * 24 23 22 26 26 H 0.96994 * 126.39339 * 180.02562 * 25 24 23 27 27 C 1.47081 * 118.23532 * 308.80908 * 17 16 15 28 28 C 1.46895 * 111.00149 * 174.97808 * 14 12 11 29 29 C 1.47019 * 125.65152 * 179.97438 * 9 7 2 30 30 H 0.96997 * 120.00161 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36718 * 274.73193 * 10 9 7 32 32 H 1.09005 * 110.36600 * 37.05754 * 10 9 7 33 33 H 1.09002 * 111.00097 * 155.08840 * 11 10 9 34 34 H 1.08999 * 111.00452 * 278.93764 * 11 10 9 35 35 H 1.09000 * 109.49706 * 292.70617 * 15 14 12 36 36 H 1.09000 * 109.49136 * 52.79254 * 15 14 12 37 37 H 1.08994 * 109.62922 * 294.12357 * 16 15 14 38 38 H 1.09000 * 109.62406 * 173.54180 * 16 15 14 39 39 H 1.09000 * 109.46498 * 299.99705 * 20 18 17 40 40 H 1.08995 * 109.47512 * 59.99993 * 20 18 17 41 41 H 1.08004 * 125.99276 * 0.02597 * 22 21 20 42 42 H 1.08000 * 125.65215 * 179.73766 * 24 23 22 43 43 H 1.08998 * 109.62655 * 291.47708 * 27 17 16 44 44 H 1.08999 * 109.62739 * 170.90138 * 27 17 16 45 45 H 1.08998 * 109.49213 * 307.21413 * 28 14 12 46 46 H 1.09004 * 109.49494 * 67.28537 * 28 14 12 47 47 H 1.09001 * 109.88389 * 300.46074 * 29 9 7 48 48 H 1.09004 * 109.87600 * 61.47032 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1414 -2.5332 0.0006 11 6 -0.4015 -3.9325 -0.6111 12 6 0.7785 -4.7524 -0.0258 13 1 0.5481 -5.1002 0.9811 14 7 1.1096 -5.8845 -0.9016 15 6 -0.0347 -6.7953 -1.0398 16 6 0.2870 -7.8576 -2.0964 17 7 1.5574 -8.5053 -1.7359 18 6 1.6555 -9.8479 -1.6714 19 8 2.7108 -10.3651 -1.3721 20 6 0.4538 -10.7064 -1.9713 21 6 0.8266 -12.1596 -1.8289 22 6 1.3884 -12.9403 -2.7715 23 7 1.5620 -14.1631 -2.2482 24 6 1.1212 -14.1720 -1.0200 25 7 0.6537 -12.9414 -0.7187 26 1 0.2679 -12.6633 0.1267 27 6 2.7178 -7.6488 -1.4473 28 6 2.3004 -6.5947 -0.4164 29 6 1.9319 -3.7275 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5272 -2.4867 1.0189 32 1 -0.5992 -1.7590 -0.6152 33 1 -1.3589 -4.3328 -0.2776 34 1 -0.3518 -3.8985 -1.6994 35 1 -0.2308 -7.2808 -0.0838 36 1 -0.9142 -6.2301 -1.3483 37 1 0.3814 -7.3849 -3.0739 38 1 -0.5091 -8.6017 -2.1217 39 1 -0.3473 -10.4670 -1.2719 40 1 0.1160 -10.5158 -2.9899 41 1 1.6549 -12.6347 -3.7725 42 1 1.1288 -15.0227 -0.3546 43 1 3.0458 -7.1561 -2.3626 44 1 3.5288 -8.2549 -1.0436 45 1 3.1143 -5.8842 -0.2727 46 1 2.0718 -7.0830 0.5310 47 1 2.5582 -3.8510 -0.8830 48 1 2.5307 -3.8632 0.9012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046065727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:41 Heat of formation + Delta-G solvation = 73.143132 kcal Electronic energy + Delta-G solvation = -28669.417882 eV Core-core repulsion = 24761.573196 eV Total energy + Delta-G solvation = -3907.844686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34082 -40.36111 -38.64001 -36.69678 -34.34668 -33.22162 -32.39710 -31.91869 -31.25061 -29.28203 -28.36198 -27.12497 -25.95631 -24.19312 -23.61429 -22.12292 -21.69852 -21.07307 -20.05938 -19.74476 -19.21299 -18.10097 -17.59452 -16.90527 -16.09669 -15.89945 -15.66132 -15.03897 -14.91838 -14.73113 -14.60329 -14.49792 -14.15473 -13.89396 -13.68986 -13.40065 -13.36379 -13.18549 -12.48718 -12.45146 -12.41917 -11.89566 -11.69613 -11.63494 -11.39198 -11.34474 -10.97101 -10.81701 -10.33331 -10.29816 -10.27354 -10.21452 -10.12871 -10.01563 -9.85527 -9.59564 -8.93840 -8.66347 -8.66110 -8.21699 -6.84884 -5.66835 -3.08320 1.67792 2.34435 2.64391 2.85893 2.98541 3.39792 3.43854 3.45071 3.86165 4.18363 4.29070 4.48788 4.51386 4.55226 4.70332 4.79812 4.94592 4.96579 5.06396 5.13508 5.21311 5.28852 5.33583 5.40915 5.49138 5.49626 5.56444 5.66328 5.70037 5.79412 5.86222 5.88327 5.93619 6.21716 6.29647 6.44286 6.49237 6.51460 6.61198 6.65278 7.03970 7.12208 7.14128 7.34510 7.48259 7.60956 7.77995 7.83091 7.90474 8.34405 9.20561 9.81507 10.46013 11.37185 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.040315 B = 0.002001 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.363459 B =13991.959112 C =14316.683746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.153 3.847 11 C -0.134 4.134 12 C 0.072 3.928 13 H 0.042 0.958 14 N -0.525 5.525 15 C 0.041 3.959 16 C 0.110 3.890 17 N -0.612 5.612 18 C 0.513 3.487 19 O -0.533 6.533 20 C -0.064 4.064 21 C -0.007 4.007 22 C -0.007 4.007 23 N -0.494 5.494 24 C 0.186 3.814 25 N -0.563 5.563 26 H 0.418 0.582 27 C 0.118 3.882 28 C 0.040 3.960 29 C 0.146 3.854 30 H 0.252 0.748 31 H 0.010 0.990 32 H 0.108 0.892 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.033 0.967 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.167 0.833 42 H 0.208 0.792 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.033 0.967 47 H 0.035 0.965 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 -23.273 -2.568 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.028 3.972 11 C -0.173 4.173 12 C -0.036 4.036 13 H 0.060 0.940 14 N -0.250 5.250 15 C -0.088 4.088 16 C -0.013 4.013 17 N -0.346 5.346 18 C 0.300 3.700 19 O -0.409 6.409 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.155 4.155 23 N -0.213 5.213 24 C -0.098 4.098 25 N -0.166 5.166 26 H 0.255 0.745 27 C -0.004 4.004 28 C -0.088 4.088 29 C 0.020 3.980 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.137 0.863 41 H 0.185 0.815 42 H 0.224 0.776 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -3.173 -23.818 -3.320 24.257 hybrid contribution -0.313 1.402 1.867 2.356 sum -3.487 -22.416 -1.453 22.732 Atomic orbital electron populations 1.69775 1.04881 1.24874 1.57696 1.24786 0.95747 0.97714 1.02481 0.86141 0.78394 0.82991 0.77903 1.21120 1.21572 1.21262 1.19025 0.90477 0.82400 1.43018 0.90553 1.44416 1.01938 0.99622 1.86906 1.21927 0.84817 0.92455 0.98049 1.23091 0.94807 0.98381 1.00973 1.22700 0.98065 0.89836 0.93004 0.94029 1.62012 1.03713 1.08745 1.50531 1.22449 0.95056 0.93862 0.97481 1.21949 0.84833 0.95164 0.99358 1.48213 1.12501 1.05157 1.68729 1.20477 0.90022 0.82038 0.77443 1.90738 1.30063 1.72559 1.47523 1.20069 0.97071 0.88017 1.05394 1.20453 1.09389 0.93546 0.88907 1.22029 1.03657 0.89622 1.00210 1.70278 1.20779 1.22717 1.07554 1.24939 1.00936 0.88505 0.95374 1.43199 1.48598 1.10982 1.13862 0.74469 1.21750 0.88099 0.91140 0.99450 1.22489 0.94774 0.95953 0.95625 1.21223 0.93321 0.85604 0.97872 0.93696 0.97239 0.87404 0.92857 0.91046 0.94891 0.88888 0.89915 0.89659 0.88205 0.86332 0.81546 0.77595 0.90402 0.88902 0.88890 0.94880 0.94694 0.96659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.26 3.39 -170.07 -0.58 -15.84 16 10 C 0.15 3.61 5.89 -2.53 -0.01 3.60 16 11 C -0.13 -2.38 5.38 -24.58 -0.13 -2.52 16 12 C 0.07 1.20 2.65 -65.88 -0.17 1.03 16 13 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 14 N -0.52 -7.06 4.45 -224.15 -1.00 -8.06 16 15 C 0.04 0.42 5.47 -3.69 -0.02 0.40 16 16 C 0.11 0.87 6.50 -3.60 -0.02 0.85 16 17 N -0.61 -6.11 3.01 -172.46 -0.52 -6.63 16 18 C 0.51 5.42 7.70 -10.99 -0.08 5.33 16 19 O -0.53 -7.88 15.49 5.56 0.09 -7.79 16 20 C -0.06 -0.44 4.62 -29.04 -0.13 -0.57 16 21 C -0.01 -0.06 5.73 -81.60 -0.47 -0.53 16 22 C -0.01 -0.07 11.79 -17.81 -0.21 -0.28 16 23 N -0.49 -5.80 11.25 -14.66 -0.16 -5.96 16 24 C 0.19 1.55 13.04 -90.37 -1.18 0.37 16 25 N -0.56 -4.13 6.15 -10.30 -0.06 -4.19 16 26 H 0.42 1.79 8.96 -40.82 -0.37 1.42 16 27 C 0.12 1.33 6.60 -3.60 -0.02 1.31 16 28 C 0.04 0.50 5.45 -3.71 -0.02 0.48 16 29 C 0.15 3.00 5.70 -3.07 -0.02 2.98 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 33 H 0.05 0.82 7.93 -51.93 -0.41 0.41 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.93 6.80 -51.93 -0.35 0.57 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.41 6.02 -51.93 -0.31 0.09 16 39 H 0.10 0.45 7.66 -51.93 -0.40 0.05 16 40 H 0.12 0.55 8.00 -51.93 -0.42 0.13 16 41 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 42 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.12 7.06 -51.93 -0.37 0.75 16 45 H 0.09 1.21 6.78 -51.93 -0.35 0.86 16 46 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.04 0.73 7.70 -51.93 -0.40 0.33 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -35.61 377.17 -11.22 -46.84 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.45 Total: -0.65 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -2.75 Total: 5.73 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -1.76 Total: -66.70 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.61 -11.22 -46.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046065727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.980 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds