Wall clock time and date at job start Tue Mar 31 2020 18:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48504 * 109.46961 * 240.00063 * 3 2 1 5 5 H 1.48502 * 109.46739 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47214 * 119.99927 * 3 2 1 7 7 C 1.38814 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64638 * 359.97290 * 9 7 2 11 11 C 1.54910 * 104.83209 * 155.89300 * 10 9 7 12 12 C 1.55154 * 101.58031 * 37.01037 * 11 10 9 13 13 H 1.08995 * 110.87338 * 82.93395 * 12 11 10 14 14 N 1.46903 * 110.71882 * 206.13764 * 12 11 10 15 15 C 1.46908 * 110.99459 * 299.27400 * 14 12 11 16 16 C 1.53245 * 109.33416 * 172.74660 * 15 14 12 17 17 N 1.47081 * 108.51982 * 53.83568 * 16 15 14 18 18 C 1.34775 * 120.88167 * 128.79111 * 17 16 15 19 19 O 1.21279 * 119.99745 * 180.02562 * 18 17 16 20 20 C 1.50700 * 119.99989 * 0.02562 * 18 17 16 21 21 C 1.50699 * 109.46907 * 180.02562 * 20 18 17 22 22 C 1.34669 * 126.58884 * 274.68121 * 21 20 18 23 23 N 1.34131 * 108.02070 * 179.87696 * 22 21 20 24 24 C 1.30493 * 109.25511 * 0.40245 * 23 22 21 25 25 N 1.35051 * 108.70094 * 359.75251 * 24 23 22 26 26 H 0.96994 * 126.39339 * 180.02562 * 25 24 23 27 27 C 1.47081 * 118.23532 * 308.80908 * 17 16 15 28 28 C 1.46895 * 111.00149 * 174.97808 * 14 12 11 29 29 C 1.47019 * 125.65152 * 179.97438 * 9 7 2 30 30 H 0.96997 * 120.00161 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36718 * 274.73193 * 10 9 7 32 32 H 1.09005 * 110.36600 * 37.05754 * 10 9 7 33 33 H 1.09002 * 111.00097 * 155.08840 * 11 10 9 34 34 H 1.08999 * 111.00452 * 278.93764 * 11 10 9 35 35 H 1.09000 * 109.49706 * 292.70617 * 15 14 12 36 36 H 1.09000 * 109.49136 * 52.79254 * 15 14 12 37 37 H 1.08994 * 109.62922 * 294.12357 * 16 15 14 38 38 H 1.09000 * 109.62406 * 173.54180 * 16 15 14 39 39 H 1.09000 * 109.46498 * 299.99705 * 20 18 17 40 40 H 1.08995 * 109.47512 * 59.99993 * 20 18 17 41 41 H 1.08004 * 125.99276 * 0.02597 * 22 21 20 42 42 H 1.08000 * 125.65215 * 179.73766 * 24 23 22 43 43 H 1.08998 * 109.62655 * 291.47708 * 27 17 16 44 44 H 1.08999 * 109.62739 * 170.90138 * 27 17 16 45 45 H 1.08998 * 109.49213 * 307.21413 * 28 14 12 46 46 H 1.09004 * 109.49494 * 67.28537 * 28 14 12 47 47 H 1.09001 * 109.88389 * 300.46074 * 29 9 7 48 48 H 1.09004 * 109.87600 * 61.47032 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1414 -2.5332 0.0006 11 6 -0.4015 -3.9325 -0.6111 12 6 0.7785 -4.7524 -0.0258 13 1 0.5481 -5.1002 0.9811 14 7 1.1096 -5.8845 -0.9016 15 6 -0.0347 -6.7953 -1.0398 16 6 0.2870 -7.8576 -2.0964 17 7 1.5574 -8.5053 -1.7359 18 6 1.6555 -9.8479 -1.6714 19 8 2.7108 -10.3651 -1.3721 20 6 0.4538 -10.7064 -1.9713 21 6 0.8266 -12.1596 -1.8289 22 6 1.3884 -12.9403 -2.7715 23 7 1.5620 -14.1631 -2.2482 24 6 1.1212 -14.1720 -1.0200 25 7 0.6537 -12.9414 -0.7187 26 1 0.2679 -12.6633 0.1267 27 6 2.7178 -7.6488 -1.4473 28 6 2.3004 -6.5947 -0.4164 29 6 1.9319 -3.7275 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5272 -2.4867 1.0189 32 1 -0.5992 -1.7590 -0.6152 33 1 -1.3589 -4.3328 -0.2776 34 1 -0.3518 -3.8985 -1.6994 35 1 -0.2308 -7.2808 -0.0838 36 1 -0.9142 -6.2301 -1.3483 37 1 0.3814 -7.3849 -3.0739 38 1 -0.5091 -8.6017 -2.1217 39 1 -0.3473 -10.4670 -1.2719 40 1 0.1160 -10.5158 -2.9899 41 1 1.6549 -12.6347 -3.7725 42 1 1.1288 -15.0227 -0.3546 43 1 3.0458 -7.1561 -2.3626 44 1 3.5288 -8.2549 -1.0436 45 1 3.1143 -5.8842 -0.2727 46 1 2.0718 -7.0830 0.5310 47 1 2.5582 -3.8510 -0.8830 48 1 2.5307 -3.8632 0.9012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046065727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:40 Heat of formation + Delta-G solvation = 48.263592 kcal Electronic energy + Delta-G solvation = -28670.496740 eV Core-core repulsion = 24761.573196 eV Total energy + Delta-G solvation = -3908.923543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.96850 -41.23117 -39.85103 -38.03027 -35.60624 -34.04781 -33.68164 -32.96930 -32.07135 -30.96613 -29.58339 -28.09726 -27.25926 -25.80189 -24.62626 -22.91954 -22.41411 -21.87707 -21.74885 -21.06445 -20.06483 -18.94010 -18.71596 -18.35369 -17.14267 -16.85470 -16.68453 -16.43352 -15.98868 -15.86435 -15.67356 -15.43544 -15.17273 -14.89000 -14.63197 -14.43982 -14.30328 -14.17438 -14.01361 -13.47483 -13.41184 -13.29675 -13.04661 -12.91151 -12.70656 -12.60179 -12.47859 -12.25437 -12.02754 -11.81938 -11.71163 -11.55364 -11.38623 -11.04263 -10.96393 -10.83483 -10.73090 -9.81994 -9.31866 -9.25428 -8.87817 -7.76832 -5.20986 1.04420 1.46964 1.49902 1.56236 1.58700 1.94308 2.25907 2.34165 2.49049 2.82398 3.33186 3.53998 3.68039 3.72447 3.77859 3.96202 4.00139 4.04401 4.11100 4.14713 4.23787 4.30197 4.36372 4.44409 4.50791 4.56495 4.61598 4.67768 4.69275 4.74897 4.76693 4.88344 4.91937 5.03814 5.05496 5.12258 5.15810 5.26206 5.42056 5.46687 5.67099 5.78607 5.81769 6.05557 6.13692 6.32934 6.41166 6.58116 7.12037 7.12805 7.14986 7.79238 8.42490 9.24683 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.040315 B = 0.002001 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.363459 B =13991.959112 C =14316.683746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.626 5.626 10 C 0.152 3.848 11 C -0.112 4.112 12 C 0.091 3.909 13 H 0.045 0.955 14 N -0.531 5.531 15 C 0.036 3.964 16 C 0.113 3.887 17 N -0.610 5.610 18 C 0.512 3.488 19 O -0.582 6.582 20 C -0.056 4.056 21 C -0.007 4.007 22 C -0.041 4.041 23 N -0.542 5.542 24 C 0.188 3.812 25 N -0.555 5.555 26 H 0.433 0.567 27 C 0.124 3.876 28 C 0.047 3.953 29 C 0.144 3.856 30 H 0.248 0.752 31 H -0.015 1.015 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.242 0.758 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.032 0.968 47 H 0.032 0.968 48 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.563 -24.668 -2.691 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.352 5.352 10 C 0.027 3.973 11 C -0.151 4.151 12 C -0.017 4.017 13 H 0.063 0.937 14 N -0.256 5.256 15 C -0.092 4.092 16 C -0.009 4.009 17 N -0.344 5.344 18 C 0.302 3.698 19 O -0.462 6.462 20 C -0.096 4.096 21 C -0.124 4.124 22 C -0.189 4.189 23 N -0.261 5.261 24 C -0.096 4.096 25 N -0.160 5.160 26 H 0.273 0.727 27 C 0.001 3.999 28 C -0.082 4.082 29 C 0.018 3.982 30 H 0.057 0.943 31 H 0.003 0.997 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.184 0.816 42 H 0.258 0.742 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -4.572 -25.227 -3.442 25.868 hybrid contribution 0.153 1.796 1.934 2.644 sum -4.418 -23.430 -1.508 23.891 Atomic orbital electron populations 1.70028 1.06063 1.25103 1.58491 1.25616 0.96701 1.00870 1.02712 0.85135 0.77151 0.78822 0.78105 1.20318 1.21756 1.20655 1.19380 0.90917 0.83850 1.42723 0.90506 1.44740 1.02935 1.00734 1.86804 1.21752 0.83945 0.95204 0.96429 1.22857 0.96837 0.94818 1.00562 1.22363 0.95515 0.90097 0.93765 0.93748 1.61952 1.05282 1.09019 1.49351 1.22623 0.93906 0.93933 0.98710 1.22146 0.84834 0.95505 0.98445 1.48290 1.12758 1.05098 1.68214 1.21113 0.90437 0.82124 0.76154 1.90727 1.32280 1.73389 1.49813 1.20180 0.95880 0.85621 1.07965 1.20711 1.08501 0.94450 0.88754 1.22264 1.05212 0.90211 1.01175 1.70221 1.22706 1.23724 1.09484 1.25624 0.99434 0.89680 0.94899 1.43216 1.48016 1.10544 1.14184 0.72654 1.21542 0.88673 0.90814 0.98891 1.22402 0.94095 0.95753 0.95934 1.21342 0.94716 0.84796 0.97317 0.94274 0.99669 0.90737 0.89555 0.90973 0.94208 0.87942 0.89545 0.85383 0.84788 0.83539 0.81570 0.74240 0.90533 0.90056 0.90193 0.95010 0.95045 0.97044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.87 10.09 21.65 0.22 -55.65 16 2 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 3 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.24 -13.52 10.27 84.03 0.86 -12.66 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.63 -32.25 3.39 -691.99 -2.35 -34.59 16 10 C 0.15 7.30 5.89 86.86 0.51 7.81 16 11 C -0.11 -3.81 5.38 31.99 0.17 -3.64 16 12 C 0.09 2.90 2.65 46.10 0.12 3.02 16 13 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 14 N -0.53 -13.07 4.45 -863.08 -3.84 -16.91 16 15 C 0.04 0.60 5.47 86.38 0.47 1.07 16 16 C 0.11 1.28 6.50 86.35 0.56 1.84 16 17 N -0.61 -10.46 3.01 -817.94 -2.46 -12.92 16 18 C 0.51 9.52 7.70 87.66 0.68 10.20 16 19 O -0.58 -16.73 15.49 -3.03 -0.05 -16.77 16 20 C -0.06 -0.54 4.62 29.10 0.13 -0.41 16 21 C -0.01 -0.12 5.73 40.95 0.23 0.12 16 22 C -0.04 -0.87 11.79 83.52 0.98 0.12 16 23 N -0.54 -12.45 11.25 -200.30 -2.25 -14.71 16 24 C 0.19 2.80 13.04 180.26 2.35 5.15 16 25 N -0.56 -6.80 6.15 -186.49 -1.15 -7.95 16 26 H 0.43 2.37 8.96 -92.71 -0.83 1.54 16 27 C 0.12 2.66 6.60 86.35 0.57 3.23 16 28 C 0.05 1.11 5.45 86.38 0.47 1.58 16 29 C 0.14 5.90 5.70 86.73 0.49 6.40 16 30 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 31 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 32 H 0.07 4.10 5.87 -2.38 -0.01 4.08 16 33 H 0.09 2.38 7.93 -2.39 -0.02 2.36 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.10 1.56 6.80 -2.39 -0.02 1.54 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.13 0.41 6.02 -2.39 -0.01 0.40 16 39 H 0.13 0.43 7.66 -2.39 -0.02 0.41 16 40 H 0.15 0.65 8.00 -2.39 -0.02 0.63 16 41 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 42 H 0.24 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 1.96 7.06 -2.39 -0.02 1.94 16 45 H 0.08 2.07 6.78 -2.39 -0.02 2.06 16 46 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.03 1.31 7.70 -2.39 -0.02 1.29 16 48 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -81.39 377.17 -0.63 -82.01 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.14 Total: 9.35 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 9.08 Total: 20.54 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -11.83 Total: -142.73 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.05 Total: -16.77 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -81.39 -0.63 -82.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046065727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.278 kcal (2) G-P(sol) polarization free energy of solvation -81.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds