Wall clock time and date at job start Tue Mar 31 2020 18:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99731 * 2 1 4 4 H 1.48501 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47371 * 59.99223 * 3 2 1 6 6 H 1.48504 * 109.47044 * 299.99263 * 3 2 1 7 7 C 1.38810 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00374 * 325.64045 * 7 2 1 9 9 N 1.36936 * 119.99669 * 145.64335 * 7 2 1 10 10 C 1.47022 * 125.65041 * 333.89529 * 9 7 2 11 11 C 1.54325 * 107.27534 * 181.02562 * 10 9 7 12 12 C 1.55157 * 102.93717 * 22.19885 * 11 10 9 13 13 H 1.08996 * 111.00908 * 82.57426 * 12 11 10 14 14 N 1.46903 * 111.00133 * 206.42352 * 12 11 10 15 15 C 1.46895 * 111.00008 * 304.30069 * 14 12 11 16 16 C 1.53239 * 109.33954 * 172.74845 * 15 14 12 17 17 N 1.47075 * 108.52230 * 53.83180 * 16 15 14 18 18 C 1.34780 * 120.88269 * 128.79330 * 17 16 15 19 19 O 1.21278 * 119.99970 * 180.02562 * 18 17 16 20 20 C 1.50701 * 120.00020 * 0.02562 * 18 17 16 21 21 C 1.50698 * 109.47070 * 180.02562 * 20 18 17 22 22 N 1.30498 * 125.65257 * 304.68950 * 21 20 18 23 23 C 1.34128 * 109.25916 * 179.89293 * 22 21 20 24 24 C 1.34671 * 108.01916 * 0.37449 * 23 22 21 25 25 N 1.35042 * 125.65104 * 125.00335 * 21 20 18 26 26 H 0.97005 * 126.39392 * 359.97438 * 25 21 20 27 27 C 1.47076 * 118.23669 * 308.81325 * 17 16 15 28 28 C 1.46902 * 110.99788 * 179.97438 * 14 12 11 29 29 C 1.47426 * 125.64969 * 153.59750 * 9 7 2 30 30 H 0.97004 * 119.99870 * 185.06075 * 1 2 3 31 31 H 1.08999 * 109.88375 * 300.45180 * 10 9 7 32 32 H 1.09003 * 109.88003 * 61.61302 * 10 9 7 33 33 H 1.08993 * 110.71828 * 140.55893 * 11 10 9 34 34 H 1.08994 * 110.71919 * 263.83667 * 11 10 9 35 35 H 1.09001 * 109.49279 * 292.70835 * 15 14 12 36 36 H 1.08996 * 109.49631 * 52.78893 * 15 14 12 37 37 H 1.08997 * 109.62950 * 294.11546 * 16 15 14 38 38 H 1.09004 * 109.78686 * 173.63738 * 16 15 14 39 39 H 1.08999 * 109.47368 * 300.00484 * 20 18 17 40 40 H 1.09003 * 109.46660 * 60.00363 * 20 18 17 41 41 H 1.07998 * 125.99206 * 180.11956 * 23 22 21 42 42 H 1.07999 * 126.59111 * 179.73943 * 24 23 22 43 43 H 1.08997 * 109.63178 * 291.47612 * 27 17 16 44 44 H 1.09000 * 109.79076 * 170.98876 * 27 17 16 45 45 H 1.08993 * 109.49431 * 307.21049 * 28 14 12 46 46 H 1.09005 * 109.49225 * 67.27004 * 28 14 12 47 47 H 1.08995 * 110.36621 * 274.74374 * 29 9 7 48 48 H 1.09003 * 110.36364 * 37.06655 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8912 2.3966 1.2124 6 1 1.8914 2.3964 -1.2126 7 6 2.0102 -1.2021 0.0005 8 1 1.6117 -2.0556 0.5288 9 7 3.2004 -1.3058 -0.6687 10 6 3.6072 -0.4933 -1.8245 11 6 5.0068 -0.9791 -2.2564 12 6 5.0706 -2.4161 -1.6748 13 1 4.5750 -3.1274 -2.3354 14 7 6.4597 -2.8190 -1.4179 15 6 7.2758 -2.6995 -2.6335 16 6 8.7463 -2.9524 -2.2843 17 7 8.8464 -4.2466 -1.5928 18 6 9.7272 -5.1821 -1.9998 19 8 9.7959 -6.2441 -1.4181 20 6 10.6266 -4.9085 -3.1776 21 6 11.5086 -6.1052 -3.4248 22 7 12.2981 -6.6624 -2.5478 23 6 12.9264 -7.7023 -3.1159 24 6 12.5168 -7.7879 -4.3959 25 7 11.6174 -6.7750 -4.5924 26 1 11.1462 -6.5753 -5.4165 27 6 7.9595 -4.4931 -0.4458 28 6 6.5199 -4.1793 -0.8667 29 6 4.2887 -2.2464 -0.3457 30 1 -0.4850 -0.8368 0.0741 31 1 2.8988 -0.6301 -2.6415 32 1 3.6509 0.5584 -1.5413 33 1 5.0899 -0.9988 -3.3430 34 1 5.7843 -0.3517 -1.8204 35 1 6.9447 -3.4341 -3.3675 36 1 7.1675 -1.6970 -3.0472 37 1 9.1092 -2.1591 -1.6309 38 1 9.3430 -2.9773 -3.1962 39 1 10.0191 -4.7164 -4.0619 40 1 11.2466 -4.0371 -2.9665 41 1 13.6393 -8.3540 -2.6327 42 1 12.8369 -8.5155 -5.1270 43 1 8.2467 -3.8479 0.3845 44 1 8.0325 -5.5369 -0.1405 45 1 5.8635 -4.2497 0.0006 46 1 6.1988 -4.8936 -1.6249 47 1 4.9346 -1.8285 0.4264 48 1 3.8794 -3.2034 -0.0220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046074118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:07 Heat of formation + Delta-G solvation = 76.487248 kcal Electronic energy + Delta-G solvation = -28721.213480 eV Core-core repulsion = 24813.513806 eV Total energy + Delta-G solvation = -3907.699674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.36122 -40.34434 -38.70187 -36.83900 -34.37869 -32.86165 -32.69987 -32.17512 -31.26019 -29.54383 -28.61633 -27.56270 -26.08815 -24.06217 -23.28628 -22.11269 -21.82992 -20.89903 -20.27974 -19.88269 -19.19977 -18.19578 -17.57816 -17.41105 -16.15972 -15.96442 -15.74210 -15.23224 -15.01821 -14.97004 -14.61873 -14.34162 -14.15469 -14.01087 -13.68621 -13.54228 -13.25981 -13.19791 -12.82418 -12.56870 -12.45867 -12.26453 -12.20633 -11.71371 -11.45090 -11.24636 -11.06703 -10.89924 -10.47567 -10.41483 -10.31825 -10.30201 -10.21549 -9.98121 -9.57814 -9.27233 -8.92887 -8.72918 -8.30482 -8.23776 -7.05862 -6.31077 -3.25149 1.67131 2.41056 2.50683 2.83779 3.01682 3.46103 3.53963 3.69328 3.77678 3.92968 4.25669 4.44307 4.60205 4.66185 4.72361 4.79440 4.87922 4.91061 5.00592 5.08452 5.11299 5.18364 5.22037 5.30303 5.35245 5.45167 5.46667 5.57485 5.61451 5.63886 5.74432 5.75192 5.88359 5.93548 6.16943 6.22104 6.26236 6.44316 6.50328 6.61436 6.67944 6.85487 6.96091 7.06366 7.13127 7.26061 7.83196 7.92010 7.97280 8.38415 9.02005 9.61888 10.35542 11.06212 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.037257 B = 0.002098 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.346945 B =13340.793544 C =13575.456375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.006 4.006 3 Si 1.050 2.950 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.293 1.293 7 C -0.342 4.342 8 H 0.066 0.934 9 N -0.603 5.603 10 C 0.125 3.875 11 C -0.122 4.122 12 C 0.069 3.931 13 H 0.049 0.951 14 N -0.526 5.526 15 C 0.039 3.961 16 C 0.111 3.889 17 N -0.614 5.614 18 C 0.520 3.480 19 O -0.516 6.516 20 C -0.054 4.054 21 C 0.217 3.783 22 N -0.460 5.460 23 C -0.026 4.026 24 C -0.056 4.056 25 N -0.567 5.567 26 H 0.417 0.583 27 C 0.120 3.880 28 C 0.042 3.958 29 C 0.141 3.859 30 H 0.265 0.735 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.170 0.830 42 H 0.177 0.823 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.035 0.965 47 H 0.033 0.967 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.010 -9.980 -12.767 29.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.210 4.210 3 Si 0.880 3.120 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.220 1.220 7 C -0.469 4.469 8 H 0.084 0.916 9 N -0.330 5.330 10 C 0.000 4.000 11 C -0.160 4.160 12 C -0.040 4.040 13 H 0.067 0.933 14 N -0.251 5.251 15 C -0.090 4.090 16 C -0.012 4.012 17 N -0.349 5.349 18 C 0.306 3.694 19 O -0.391 6.391 20 C -0.095 4.095 21 C -0.048 4.048 22 N -0.179 5.179 23 C -0.175 4.175 24 C -0.190 4.190 25 N -0.171 5.171 26 H 0.255 0.745 27 C -0.003 4.003 28 C -0.086 4.086 29 C 0.015 3.985 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.187 0.813 42 H 0.194 0.806 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 25.087 -8.394 -11.254 28.749 hybrid contribution -0.516 -2.338 -1.846 3.024 sum 24.571 -10.732 -13.101 29.842 Atomic orbital electron populations 1.70925 1.06421 1.30499 1.46256 1.26073 0.96147 1.01038 0.97729 0.84030 0.75645 0.75890 0.76389 1.20416 1.22568 1.22016 1.19762 0.95489 0.97214 1.34441 0.91632 1.44632 1.15230 1.41896 1.31274 1.21588 0.92400 0.95431 0.90600 1.22642 0.98768 0.95517 0.99101 1.22900 0.86365 0.95996 0.98715 0.93286 1.61934 1.10937 1.23954 1.28302 1.22473 0.92621 1.02134 0.91778 1.21914 0.96778 0.85244 0.97306 1.48144 1.38028 1.16010 1.32751 1.20066 0.80474 0.83912 0.84997 1.90769 1.67712 1.24419 1.56175 1.19958 0.95991 0.94726 0.98845 1.22334 1.01475 0.98351 0.82600 1.70250 1.08799 1.08924 1.29941 1.22404 1.03887 0.99158 0.92047 1.22749 0.99204 0.96518 1.00541 1.43225 1.35423 1.25338 1.13063 0.74519 1.21713 0.87902 1.02810 0.87830 1.22482 0.96678 0.88967 1.00511 1.21617 0.89694 0.94309 0.92898 0.92422 0.94874 0.95139 0.91988 0.90671 0.94718 0.88986 0.90019 0.89765 0.87608 0.86203 0.81305 0.80561 0.90457 0.88770 0.88922 0.94691 0.94963 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.70 55.49 0.76 -27.13 16 2 C -0.01 -0.18 5.29 -17.43 -0.09 -0.27 16 3 Si 1.05 26.18 26.22 -169.99 -4.46 21.72 16 4 H -0.28 -6.55 6.18 56.52 0.35 -6.20 16 5 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.34 -9.77 10.24 -15.06 -0.15 -9.92 16 8 H 0.07 1.99 8.06 -52.49 -0.42 1.57 16 9 N -0.60 -14.75 3.05 -169.93 -0.52 -15.27 16 10 C 0.13 2.68 6.04 -3.06 -0.02 2.66 16 11 C -0.12 -1.94 5.03 -24.90 -0.13 -2.07 16 12 C 0.07 1.09 2.73 -65.44 -0.18 0.91 16 13 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 14 N -0.53 -6.71 4.52 -223.64 -1.01 -7.72 16 15 C 0.04 0.37 5.43 -3.70 -0.02 0.35 16 16 C 0.11 0.83 6.50 -3.60 -0.02 0.81 16 17 N -0.61 -6.22 3.01 -172.47 -0.52 -6.73 16 18 C 0.52 5.87 7.70 -10.98 -0.08 5.78 16 19 O -0.52 -8.18 15.02 5.56 0.08 -8.10 16 20 C -0.05 -0.39 4.69 -29.04 -0.14 -0.53 16 21 C 0.22 2.16 6.95 -155.42 -1.08 1.08 16 22 N -0.46 -5.95 10.59 -10.82 -0.11 -6.07 16 23 C -0.03 -0.26 11.87 -17.81 -0.21 -0.48 16 24 C -0.06 -0.41 12.04 -16.56 -0.20 -0.61 16 25 N -0.57 -3.94 6.15 -10.23 -0.06 -4.00 16 26 H 0.42 1.39 8.96 -40.82 -0.37 1.02 16 27 C 0.12 1.35 6.59 -3.61 -0.02 1.33 16 28 C 0.04 0.51 5.52 -3.70 -0.02 0.49 16 29 C 0.14 2.83 5.95 -2.41 -0.01 2.81 16 30 H 0.27 8.12 8.73 -40.82 -0.36 7.76 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.69 3.85 -51.93 -0.20 0.49 16 33 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 34 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.81 6.64 -51.93 -0.34 0.46 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.36 6.02 -51.93 -0.31 0.05 16 39 H 0.11 0.42 7.66 -51.93 -0.40 0.02 16 40 H 0.12 0.66 8.00 -51.93 -0.42 0.24 16 41 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 1.15 7.07 -51.93 -0.37 0.79 16 45 H 0.09 1.18 7.05 -51.93 -0.37 0.81 16 46 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.04 0.75 7.87 -51.93 -0.41 0.34 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -37.90 374.33 -10.03 -47.92 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -7.44 Total: -2.62 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -2.38 Total: 2.35 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -1.47 Total: -66.92 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.46 Total: 21.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.90 -10.03 -47.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046074118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.412 kcal (2) G-P(sol) polarization free energy of solvation -37.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds