Wall clock time and date at job start Tue Mar 31 2020 18:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99731 * 2 1 4 4 H 1.48501 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47371 * 59.99223 * 3 2 1 6 6 H 1.48504 * 109.47044 * 299.99263 * 3 2 1 7 7 C 1.38810 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00374 * 325.64045 * 7 2 1 9 9 N 1.36936 * 119.99669 * 145.64335 * 7 2 1 10 10 C 1.47022 * 125.65041 * 333.89529 * 9 7 2 11 11 C 1.54325 * 107.27534 * 181.02562 * 10 9 7 12 12 C 1.55157 * 102.93717 * 22.19885 * 11 10 9 13 13 H 1.08996 * 111.00908 * 82.57426 * 12 11 10 14 14 N 1.46903 * 111.00133 * 206.42352 * 12 11 10 15 15 C 1.46895 * 111.00008 * 304.30069 * 14 12 11 16 16 C 1.53239 * 109.33954 * 172.74845 * 15 14 12 17 17 N 1.47075 * 108.52230 * 53.83180 * 16 15 14 18 18 C 1.34780 * 120.88269 * 128.79330 * 17 16 15 19 19 O 1.21278 * 119.99970 * 180.02562 * 18 17 16 20 20 C 1.50701 * 120.00020 * 0.02562 * 18 17 16 21 21 C 1.50698 * 109.47070 * 180.02562 * 20 18 17 22 22 N 1.30498 * 125.65257 * 304.68950 * 21 20 18 23 23 C 1.34128 * 109.25916 * 179.89293 * 22 21 20 24 24 C 1.34671 * 108.01916 * 0.37449 * 23 22 21 25 25 N 1.35042 * 125.65104 * 125.00335 * 21 20 18 26 26 H 0.97005 * 126.39392 * 359.97438 * 25 21 20 27 27 C 1.47076 * 118.23669 * 308.81325 * 17 16 15 28 28 C 1.46902 * 110.99788 * 179.97438 * 14 12 11 29 29 C 1.47426 * 125.64969 * 153.59750 * 9 7 2 30 30 H 0.97004 * 119.99870 * 185.06075 * 1 2 3 31 31 H 1.08999 * 109.88375 * 300.45180 * 10 9 7 32 32 H 1.09003 * 109.88003 * 61.61302 * 10 9 7 33 33 H 1.08993 * 110.71828 * 140.55893 * 11 10 9 34 34 H 1.08994 * 110.71919 * 263.83667 * 11 10 9 35 35 H 1.09001 * 109.49279 * 292.70835 * 15 14 12 36 36 H 1.08996 * 109.49631 * 52.78893 * 15 14 12 37 37 H 1.08997 * 109.62950 * 294.11546 * 16 15 14 38 38 H 1.09004 * 109.78686 * 173.63738 * 16 15 14 39 39 H 1.08999 * 109.47368 * 300.00484 * 20 18 17 40 40 H 1.09003 * 109.46660 * 60.00363 * 20 18 17 41 41 H 1.07998 * 125.99206 * 180.11956 * 23 22 21 42 42 H 1.07999 * 126.59111 * 179.73943 * 24 23 22 43 43 H 1.08997 * 109.63178 * 291.47612 * 27 17 16 44 44 H 1.09000 * 109.79076 * 170.98876 * 27 17 16 45 45 H 1.08993 * 109.49431 * 307.21049 * 28 14 12 46 46 H 1.09005 * 109.49225 * 67.27004 * 28 14 12 47 47 H 1.08995 * 110.36621 * 274.74374 * 29 9 7 48 48 H 1.09003 * 110.36364 * 37.06655 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8912 2.3966 1.2124 6 1 1.8914 2.3964 -1.2126 7 6 2.0102 -1.2021 0.0005 8 1 1.6117 -2.0556 0.5288 9 7 3.2004 -1.3058 -0.6687 10 6 3.6072 -0.4933 -1.8245 11 6 5.0068 -0.9791 -2.2564 12 6 5.0706 -2.4161 -1.6748 13 1 4.5750 -3.1274 -2.3354 14 7 6.4597 -2.8190 -1.4179 15 6 7.2758 -2.6995 -2.6335 16 6 8.7463 -2.9524 -2.2843 17 7 8.8464 -4.2466 -1.5928 18 6 9.7272 -5.1821 -1.9998 19 8 9.7959 -6.2441 -1.4181 20 6 10.6266 -4.9085 -3.1776 21 6 11.5086 -6.1052 -3.4248 22 7 12.2981 -6.6624 -2.5478 23 6 12.9264 -7.7023 -3.1159 24 6 12.5168 -7.7879 -4.3959 25 7 11.6174 -6.7750 -4.5924 26 1 11.1462 -6.5753 -5.4165 27 6 7.9595 -4.4931 -0.4458 28 6 6.5199 -4.1793 -0.8667 29 6 4.2887 -2.2464 -0.3457 30 1 -0.4850 -0.8368 0.0741 31 1 2.8988 -0.6301 -2.6415 32 1 3.6509 0.5584 -1.5413 33 1 5.0899 -0.9988 -3.3430 34 1 5.7843 -0.3517 -1.8204 35 1 6.9447 -3.4341 -3.3675 36 1 7.1675 -1.6970 -3.0472 37 1 9.1092 -2.1591 -1.6309 38 1 9.3430 -2.9773 -3.1962 39 1 10.0191 -4.7164 -4.0619 40 1 11.2466 -4.0371 -2.9665 41 1 13.6393 -8.3540 -2.6327 42 1 12.8369 -8.5155 -5.1270 43 1 8.2467 -3.8479 0.3845 44 1 8.0325 -5.5369 -0.1405 45 1 5.8635 -4.2497 0.0006 46 1 6.1988 -4.8936 -1.6249 47 1 4.9346 -1.8285 0.4264 48 1 3.8794 -3.2034 -0.0220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046074118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:06 Heat of formation + Delta-G solvation = 47.182330 kcal Electronic energy + Delta-G solvation = -28722.484236 eV Core-core repulsion = 24813.513806 eV Total energy + Delta-G solvation = -3908.970431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.96315 -41.21421 -39.90296 -38.12074 -35.62530 -34.26743 -33.45622 -33.28210 -32.06438 -31.12954 -29.84917 -28.44671 -27.25105 -25.42287 -24.57559 -22.94921 -22.46414 -22.00738 -21.66170 -21.16498 -19.98392 -19.54701 -18.79852 -18.34076 -17.22396 -16.91711 -16.79508 -16.60538 -15.95088 -15.85076 -15.66493 -15.44608 -15.12769 -15.05785 -14.78449 -14.53577 -14.44010 -14.36055 -13.97378 -13.86301 -13.63313 -13.30063 -13.10373 -13.00383 -12.71266 -12.60922 -12.40207 -12.16755 -12.09181 -11.80455 -11.66012 -11.54348 -11.13133 -10.98571 -10.91702 -10.82424 -10.44599 -9.80701 -9.33530 -9.27469 -9.16652 -8.56362 -5.49058 1.08878 1.44562 1.55227 1.63152 1.74904 1.83170 2.25572 2.37242 2.52491 2.72423 3.01607 3.34024 3.53961 3.62805 3.66945 3.95238 3.97039 4.01426 4.08900 4.17357 4.24645 4.33372 4.37718 4.44143 4.45352 4.46387 4.52520 4.59752 4.65569 4.76957 4.79097 4.85098 4.86991 4.91892 4.98311 5.05614 5.11620 5.15425 5.17965 5.31530 5.44996 5.71381 5.83565 6.01022 6.10469 6.17411 6.40907 6.57437 6.83623 7.18327 7.22267 7.51322 8.22150 8.76062 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.037257 B = 0.002098 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.346945 B =13340.793544 C =13575.456375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.060 4.060 3 Si 1.098 2.902 4 H -0.254 1.254 5 H -0.297 1.297 6 H -0.280 1.280 7 C -0.338 4.338 8 H 0.027 0.973 9 N -0.624 5.624 10 C 0.113 3.887 11 C -0.104 4.104 12 C 0.088 3.912 13 H 0.043 0.957 14 N -0.528 5.528 15 C 0.035 3.965 16 C 0.111 3.889 17 N -0.612 5.612 18 C 0.515 3.485 19 O -0.573 6.573 20 C -0.047 4.047 21 C 0.199 3.801 22 N -0.516 5.516 23 C -0.070 4.070 24 C -0.036 4.036 25 N -0.554 5.554 26 H 0.436 0.564 27 C 0.126 3.874 28 C 0.049 3.951 29 C 0.138 3.862 30 H 0.250 0.750 31 H 0.021 0.979 32 H 0.027 0.973 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.175 0.825 42 H 0.215 0.785 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.030 0.970 47 H 0.030 0.970 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.146 -8.510 -16.101 33.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.258 4.258 3 Si 0.923 3.077 4 H -0.179 1.179 5 H -0.225 1.225 6 H -0.207 1.207 7 C -0.467 4.467 8 H 0.044 0.956 9 N -0.352 5.352 10 C -0.012 4.012 11 C -0.142 4.142 12 C -0.021 4.021 13 H 0.061 0.939 14 N -0.254 5.254 15 C -0.093 4.093 16 C -0.011 4.011 17 N -0.346 5.346 18 C 0.303 3.697 19 O -0.451 6.451 20 C -0.087 4.087 21 C -0.065 4.065 22 N -0.236 5.236 23 C -0.217 4.217 24 C -0.171 4.171 25 N -0.159 5.159 26 H 0.277 0.723 27 C 0.002 3.998 28 C -0.080 4.080 29 C 0.013 3.987 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.147 0.853 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.192 0.808 42 H 0.232 0.768 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.048 0.952 47 H 0.048 0.952 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 28.250 -6.915 -14.639 32.560 hybrid contribution -1.503 -2.959 -0.781 3.409 sum 26.747 -9.874 -15.421 32.415 Atomic orbital electron populations 1.71048 1.07539 1.29624 1.49388 1.27324 0.96117 1.04626 0.97684 0.83405 0.75623 0.71948 0.76769 1.17938 1.22519 1.20668 1.19617 0.97259 0.95983 1.33854 0.95556 1.44733 1.15131 1.43100 1.32187 1.21804 0.95515 0.94904 0.88956 1.22596 0.95345 0.94740 1.01521 1.22547 0.87698 0.96442 0.95458 0.93873 1.61892 1.09136 1.23907 1.30425 1.22672 0.92950 1.03431 0.90236 1.22177 0.96071 0.83732 0.99104 1.48245 1.37240 1.16948 1.32182 1.20805 0.80413 0.83026 0.85470 1.90751 1.69376 1.26823 1.58176 1.20104 0.95644 0.94492 0.98503 1.22715 1.01536 0.99181 0.83115 1.70156 1.10619 1.10624 1.32201 1.22755 1.05407 0.99832 0.93738 1.23282 0.97586 0.96160 1.00066 1.43198 1.35002 1.24550 1.13183 0.72295 1.21495 0.87743 1.01819 0.88710 1.22369 0.96937 0.88847 0.99802 1.21694 0.88964 0.92439 0.95635 0.94034 0.96094 0.95538 0.88098 0.89022 0.94212 0.87068 0.89421 0.85346 0.83296 0.83827 0.80811 0.76844 0.90430 0.90465 0.90451 0.95198 0.95191 0.96030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.72 13.70 21.65 0.30 -59.43 16 2 C -0.06 -3.59 5.29 84.86 0.45 -3.14 16 3 Si 1.10 52.70 26.22 68.60 1.80 54.50 16 4 H -0.25 -11.12 6.18 99.48 0.61 -10.50 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.34 -20.00 10.24 84.03 0.86 -19.14 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 9 N -0.62 -30.57 3.05 -691.55 -2.11 -32.68 16 10 C 0.11 4.60 6.04 86.73 0.52 5.12 16 11 C -0.10 -2.87 5.03 31.78 0.16 -2.71 16 12 C 0.09 2.57 2.73 46.38 0.13 2.70 16 13 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 14 N -0.53 -11.93 4.52 -861.47 -3.90 -15.83 16 15 C 0.04 0.49 5.43 86.38 0.47 0.96 16 16 C 0.11 1.12 6.50 86.35 0.56 1.68 16 17 N -0.61 -10.79 3.01 -817.97 -2.46 -13.25 16 18 C 0.51 10.61 7.70 87.66 0.67 11.29 16 19 O -0.57 -18.27 15.02 -3.02 -0.05 -18.31 16 20 C -0.05 -0.51 4.69 29.10 0.14 -0.37 16 21 C 0.20 3.54 6.95 138.13 0.96 4.50 16 22 N -0.52 -13.19 10.59 -188.13 -1.99 -15.19 16 23 C -0.07 -1.38 11.87 83.52 0.99 -0.39 16 24 C -0.04 -0.44 12.04 83.09 1.00 0.56 16 25 N -0.55 -6.02 6.15 -186.27 -1.15 -7.17 16 26 H 0.44 1.14 8.96 -92.70 -0.83 0.30 16 27 C 0.13 2.75 6.59 86.35 0.57 3.32 16 28 C 0.05 1.15 5.52 86.38 0.48 1.63 16 29 C 0.14 5.52 5.95 86.93 0.52 6.04 16 30 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.03 1.12 3.85 -2.39 -0.01 1.11 16 33 H 0.10 2.07 7.96 -2.39 -0.02 2.05 16 34 H 0.09 2.30 8.11 -2.39 -0.02 2.28 16 35 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.11 1.22 6.64 -2.39 -0.02 1.21 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.13 0.21 6.02 -2.39 -0.01 0.20 16 39 H 0.15 0.28 7.66 -2.39 -0.02 0.26 16 40 H 0.14 0.90 8.00 -2.39 -0.02 0.88 16 41 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 1.97 7.07 -2.39 -0.02 1.95 16 45 H 0.08 2.02 7.05 -2.39 -0.02 2.00 16 46 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 47 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.02 0.90 7.87 -2.39 -0.02 0.88 16 Total: -1.00 -89.46 374.33 -1.07 -90.53 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 0.01 Total: 4.78 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 8.48 Total: 12.04 kcal Atomic # 7 Polarization: -132.22 SS G_CDS: -11.31 Total: -143.54 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.31 kcal Atomic # 14 Polarization: 52.70 SS G_CDS: 1.80 Total: 54.50 kcal Total: -89.46 -1.07 -90.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046074118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.709 kcal (2) G-P(sol) polarization free energy of solvation -89.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds