Wall clock time and date at job start Tue Mar 31 2020 18:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86810 * 119.99756 * 2 1 4 4 H 1.48504 * 109.46645 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47181 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46936 * 60.00361 * 3 2 1 7 7 C 1.38811 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00399 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99563 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64937 * 359.96716 * 9 7 2 11 11 C 1.54327 * 107.26867 * 178.99803 * 10 9 7 12 12 C 1.55153 * 102.94547 * 337.81032 * 11 10 9 13 13 H 1.08997 * 111.00500 * 277.38940 * 12 11 10 14 14 N 1.46898 * 111.00497 * 153.57453 * 12 11 10 15 15 C 1.46899 * 110.99901 * 61.63057 * 14 12 11 16 16 C 1.53240 * 109.33916 * 187.25190 * 15 14 12 17 17 N 1.47088 * 108.52306 * 306.16999 * 16 15 14 18 18 C 1.34768 * 120.88226 * 231.18724 * 17 16 15 19 19 O 1.21288 * 120.00120 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00087 * 179.97438 * 18 17 16 21 21 C 1.50699 * 109.47251 * 180.02562 * 20 18 17 22 22 N 1.30506 * 125.64684 * 305.01927 * 21 20 18 23 23 C 1.34130 * 109.25539 * 179.73445 * 22 21 20 24 24 C 1.34667 * 108.01929 * 0.40342 * 23 22 21 25 25 N 1.35045 * 125.65618 * 124.99844 * 21 20 18 26 26 H 0.97004 * 126.39415 * 0.02562 * 25 21 20 27 27 C 1.47085 * 118.23420 * 51.45520 * 17 16 15 28 28 C 1.46903 * 110.99843 * 185.92985 * 14 12 11 29 29 C 1.47473 * 125.62422 * 179.97438 * 9 7 2 30 30 H 0.97001 * 119.99687 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.88145 * 59.58764 * 10 9 7 32 32 H 1.08999 * 109.88544 * 298.41676 * 10 9 7 33 33 H 1.08997 * 110.72248 * 219.44442 * 11 10 9 34 34 H 1.09003 * 110.71417 * 96.17036 * 11 10 9 35 35 H 1.09005 * 109.49274 * 67.29309 * 15 14 12 36 36 H 1.08996 * 109.49478 * 307.21328 * 15 14 12 37 37 H 1.08994 * 109.62864 * 186.46135 * 16 15 14 38 38 H 1.08997 * 109.63106 * 65.87584 * 16 15 14 39 39 H 1.08996 * 109.47146 * 59.99931 * 20 18 17 40 40 H 1.09004 * 109.47008 * 299.99577 * 20 18 17 41 41 H 1.07998 * 125.98932 * 180.24468 * 23 22 21 42 42 H 1.08003 * 126.59016 * 179.87794 * 24 23 22 43 43 H 1.09000 * 109.62538 * 68.25655 * 27 17 16 44 44 H 1.08996 * 109.62301 * 188.83502 * 27 17 16 45 45 H 1.08994 * 109.49533 * 292.70819 * 28 14 12 46 46 H 1.08997 * 109.49253 * 52.78734 * 28 14 12 47 47 H 1.09001 * 110.34810 * 85.23157 * 29 9 7 48 48 H 1.08998 * 110.40743 * 322.88867 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5327 0.0007 11 6 -0.4483 -4.0441 -0.0251 12 6 0.8520 -4.6565 -0.6094 13 1 0.8567 -4.5980 -1.6978 14 7 1.0297 -6.0433 -0.1587 15 6 -0.0774 -6.8922 -0.6186 16 6 0.0485 -8.2800 0.0191 17 7 1.3933 -8.8041 -0.2642 18 6 1.5598 -10.0331 -0.7916 19 8 0.5933 -10.7227 -1.0395 20 6 2.9468 -10.5501 -1.0744 21 6 2.8568 -11.9369 -1.6574 22 7 2.2412 -12.9516 -1.1146 23 6 2.3629 -14.0218 -1.9139 24 6 3.0887 -13.6588 -2.9886 25 7 3.3993 -12.3354 -2.8281 26 1 3.9132 -11.7863 -3.4407 27 6 2.5518 -7.9537 0.0491 28 6 2.3271 -6.5766 -0.5953 29 6 1.9342 -3.7313 0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5575 -2.0528 -0.8833 32 1 -0.5543 -2.0839 0.9023 33 1 -1.2983 -4.2520 -0.6750 34 1 -0.6315 -4.4174 0.9825 35 1 -0.0375 -6.9857 -1.7039 36 1 -1.0263 -6.4425 -0.3264 37 1 -0.7014 -8.9473 -0.4053 38 1 -0.0945 -8.2021 1.0969 39 1 3.5188 -10.5818 -0.1472 40 1 3.4430 -9.8892 -1.7851 41 1 1.9531 -15.0034 -1.7270 42 1 3.3679 -14.2894 -3.8198 43 1 2.6447 -7.8451 1.1297 44 1 3.4575 -8.4054 -0.3556 45 1 2.3334 -6.6744 -1.6808 46 1 3.1219 -5.8978 -0.2862 47 1 2.1681 -4.0415 1.0190 48 1 2.8332 -3.7412 -0.6158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046074119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:10 Heat of formation + Delta-G solvation = 74.785048 kcal Electronic energy + Delta-G solvation = -28646.864670 eV Core-core repulsion = 24739.091184 eV Total energy + Delta-G solvation = -3907.773487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.32031 -40.26215 -38.54460 -36.64152 -34.28505 -32.79844 -32.62033 -31.93226 -31.16031 -29.30702 -28.19114 -27.52878 -25.82980 -24.23928 -23.55832 -22.03629 -21.78408 -20.85400 -19.92925 -19.78131 -19.12053 -18.14869 -17.46523 -16.88237 -16.04709 -15.88887 -15.55226 -15.03734 -14.87752 -14.61650 -14.53822 -14.38963 -14.17166 -14.04526 -13.62486 -13.40930 -13.18732 -12.92297 -12.52720 -12.47456 -12.24321 -12.06427 -11.83278 -11.60015 -11.35553 -11.22308 -10.88806 -10.84478 -10.27914 -10.19016 -10.15884 -10.09656 -10.02255 -9.95190 -9.92038 -9.68312 -8.85432 -8.68980 -8.61168 -8.17340 -6.83803 -5.72154 -3.05816 1.71121 2.46408 2.55975 2.88102 3.06715 3.38534 3.43626 3.46455 3.88889 3.98738 4.31833 4.49540 4.50648 4.75455 4.82327 4.85506 4.93472 5.01463 5.11153 5.14949 5.27202 5.30965 5.39017 5.45016 5.51097 5.60855 5.63280 5.70781 5.78078 5.78603 5.82039 5.86091 5.98526 6.26862 6.31670 6.46581 6.48042 6.51257 6.62958 6.72766 7.00336 7.15841 7.20840 7.37032 7.55389 7.63655 7.82277 7.87049 8.02631 8.25141 9.21017 9.81463 10.47376 11.39526 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032773 B = 0.002036 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.161114 B =13746.213371 C =14282.748514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.179 3.821 11 C -0.134 4.134 12 C 0.068 3.932 13 H 0.046 0.954 14 N -0.526 5.526 15 C 0.042 3.958 16 C 0.120 3.880 17 N -0.614 5.614 18 C 0.520 3.480 19 O -0.518 6.518 20 C -0.054 4.054 21 C 0.217 3.783 22 N -0.460 5.460 23 C -0.027 4.027 24 C -0.057 4.057 25 N -0.567 5.567 26 H 0.417 0.583 27 C 0.111 3.889 28 C 0.039 3.961 29 C 0.149 3.851 30 H 0.252 0.748 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.169 0.831 42 H 0.177 0.823 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.035 0.965 46 H 0.093 0.907 47 H 0.030 0.970 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.433 -23.791 -4.936 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.173 4.173 12 C -0.041 4.041 13 H 0.064 0.936 14 N -0.251 5.251 15 C -0.086 4.086 16 C -0.003 4.003 17 N -0.349 5.349 18 C 0.306 3.694 19 O -0.393 6.393 20 C -0.096 4.096 21 C -0.047 4.047 22 N -0.179 5.179 23 C -0.175 4.175 24 C -0.191 4.191 25 N -0.170 5.170 26 H 0.255 0.745 27 C -0.012 4.012 28 C -0.090 4.090 29 C 0.022 3.978 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.124 0.876 41 H 0.187 0.813 42 H 0.194 0.806 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.053 0.947 46 H 0.111 0.889 47 H 0.048 0.952 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.409 -23.970 -3.791 25.100 hybrid contribution 1.164 1.185 -2.090 2.670 sum 7.573 -22.785 -5.881 24.720 Atomic orbital electron populations 1.69975 1.04876 1.24901 1.57148 1.24814 0.95737 0.97686 1.02333 0.86045 0.78682 0.83796 0.77233 1.20521 1.21816 1.21734 1.19086 0.90426 0.82345 1.43656 0.90412 1.44435 1.01780 0.99795 1.87264 1.21134 0.84329 0.88071 1.01069 1.22934 0.95065 0.99138 1.00143 1.22882 0.98761 0.85719 0.96739 0.93645 1.61966 1.01094 1.02117 1.59906 1.22461 0.96010 0.92796 0.97373 1.21724 0.83659 0.93859 1.01010 1.48161 1.08155 1.15403 1.63187 1.20058 0.90741 0.80992 0.77636 1.90765 1.41458 1.55825 1.51224 1.19964 0.97206 0.89207 1.03200 1.22351 0.99590 0.96575 0.86190 1.70256 1.18706 0.98499 1.30458 1.22399 1.03262 0.98847 0.93031 1.22742 1.07231 0.85342 1.03741 1.43228 1.43446 1.10915 1.19440 0.74498 1.22029 0.87616 0.90036 1.01563 1.22556 0.93512 0.95457 0.97464 1.21474 0.93315 0.85683 0.97337 0.93805 0.93749 0.93779 0.92668 0.91396 0.94846 0.89084 0.88889 0.90540 0.86190 0.87560 0.81333 0.80588 0.89939 0.89790 0.94703 0.88896 0.95242 0.94934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 10.31 55.49 0.57 -26.39 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -15.27 3.40 -170.04 -0.58 -15.85 16 10 C 0.18 4.31 5.37 -3.06 -0.02 4.29 16 11 C -0.13 -2.46 5.32 -24.90 -0.13 -2.59 16 12 C 0.07 1.14 2.71 -65.57 -0.18 0.96 16 13 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 14 N -0.53 -7.09 4.53 -223.50 -1.01 -8.10 16 15 C 0.04 0.52 5.48 -3.70 -0.02 0.50 16 16 C 0.12 1.38 6.60 -3.60 -0.02 1.35 16 17 N -0.61 -6.51 3.00 -172.18 -0.52 -7.03 16 18 C 0.52 6.08 7.70 -10.99 -0.08 6.00 16 19 O -0.52 -8.34 15.00 5.55 0.08 -8.26 16 20 C -0.05 -0.43 4.69 -29.04 -0.14 -0.56 16 21 C 0.22 2.24 6.96 -155.41 -1.08 1.16 16 22 N -0.46 -6.08 10.58 -10.81 -0.11 -6.20 16 23 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 24 C -0.06 -0.43 12.04 -16.56 -0.20 -0.63 16 25 N -0.57 -4.15 6.15 -10.23 -0.06 -4.21 16 26 H 0.42 1.56 8.96 -40.82 -0.37 1.20 16 27 C 0.11 0.93 6.53 -3.36 -0.02 0.91 16 28 C 0.04 0.42 5.50 -3.46 -0.02 0.41 16 29 C 0.15 2.96 5.66 -2.51 -0.01 2.94 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.04 1.18 7.38 -51.93 -0.38 0.80 16 32 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 33 H 0.05 0.92 7.94 -51.93 -0.41 0.50 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 1.11 6.85 -51.93 -0.36 0.76 16 37 H 0.09 1.15 7.06 -51.93 -0.37 0.78 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.12 0.72 7.99 -51.93 -0.41 0.31 16 40 H 0.11 0.48 7.67 -51.93 -0.40 0.09 16 41 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.18 0.68 8.06 -52.48 -0.42 0.26 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.44 6.02 -51.93 -0.31 0.12 16 45 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 1.01 6.81 -51.93 -0.35 0.66 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.03 0.62 7.85 -51.93 -0.41 0.22 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -36.59 377.32 -10.87 -47.45 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.51 Total: -1.48 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -2.39 Total: 7.49 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -1.71 Total: -67.78 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.08 Total: -8.26 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.59 -10.87 -47.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046074119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.238 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds