Wall clock time and date at job start Tue Mar 31 2020 18:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86810 * 119.99756 * 2 1 4 4 H 1.48504 * 109.46645 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47181 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46936 * 60.00361 * 3 2 1 7 7 C 1.38811 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00399 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99563 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64937 * 359.96716 * 9 7 2 11 11 C 1.54327 * 107.26867 * 178.99803 * 10 9 7 12 12 C 1.55153 * 102.94547 * 337.81032 * 11 10 9 13 13 H 1.08997 * 111.00500 * 277.38940 * 12 11 10 14 14 N 1.46898 * 111.00497 * 153.57453 * 12 11 10 15 15 C 1.46899 * 110.99901 * 61.63057 * 14 12 11 16 16 C 1.53240 * 109.33916 * 187.25190 * 15 14 12 17 17 N 1.47088 * 108.52306 * 306.16999 * 16 15 14 18 18 C 1.34768 * 120.88226 * 231.18724 * 17 16 15 19 19 O 1.21288 * 120.00120 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00087 * 179.97438 * 18 17 16 21 21 C 1.50699 * 109.47251 * 180.02562 * 20 18 17 22 22 N 1.30506 * 125.64684 * 305.01927 * 21 20 18 23 23 C 1.34130 * 109.25539 * 179.73445 * 22 21 20 24 24 C 1.34667 * 108.01929 * 0.40342 * 23 22 21 25 25 N 1.35045 * 125.65618 * 124.99844 * 21 20 18 26 26 H 0.97004 * 126.39415 * 0.02562 * 25 21 20 27 27 C 1.47085 * 118.23420 * 51.45520 * 17 16 15 28 28 C 1.46903 * 110.99843 * 185.92985 * 14 12 11 29 29 C 1.47473 * 125.62422 * 179.97438 * 9 7 2 30 30 H 0.97001 * 119.99687 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.88145 * 59.58764 * 10 9 7 32 32 H 1.08999 * 109.88544 * 298.41676 * 10 9 7 33 33 H 1.08997 * 110.72248 * 219.44442 * 11 10 9 34 34 H 1.09003 * 110.71417 * 96.17036 * 11 10 9 35 35 H 1.09005 * 109.49274 * 67.29309 * 15 14 12 36 36 H 1.08996 * 109.49478 * 307.21328 * 15 14 12 37 37 H 1.08994 * 109.62864 * 186.46135 * 16 15 14 38 38 H 1.08997 * 109.63106 * 65.87584 * 16 15 14 39 39 H 1.08996 * 109.47146 * 59.99931 * 20 18 17 40 40 H 1.09004 * 109.47008 * 299.99577 * 20 18 17 41 41 H 1.07998 * 125.98932 * 180.24468 * 23 22 21 42 42 H 1.08003 * 126.59016 * 179.87794 * 24 23 22 43 43 H 1.09000 * 109.62538 * 68.25655 * 27 17 16 44 44 H 1.08996 * 109.62301 * 188.83502 * 27 17 16 45 45 H 1.08994 * 109.49533 * 292.70819 * 28 14 12 46 46 H 1.08997 * 109.49253 * 52.78734 * 28 14 12 47 47 H 1.09001 * 110.34810 * 85.23157 * 29 9 7 48 48 H 1.08998 * 110.40743 * 322.88867 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5327 0.0007 11 6 -0.4483 -4.0441 -0.0251 12 6 0.8520 -4.6565 -0.6094 13 1 0.8567 -4.5980 -1.6978 14 7 1.0297 -6.0433 -0.1587 15 6 -0.0774 -6.8922 -0.6186 16 6 0.0485 -8.2800 0.0191 17 7 1.3933 -8.8041 -0.2642 18 6 1.5598 -10.0331 -0.7916 19 8 0.5933 -10.7227 -1.0395 20 6 2.9468 -10.5501 -1.0744 21 6 2.8568 -11.9369 -1.6574 22 7 2.2412 -12.9516 -1.1146 23 6 2.3629 -14.0218 -1.9139 24 6 3.0887 -13.6588 -2.9886 25 7 3.3993 -12.3354 -2.8281 26 1 3.9132 -11.7863 -3.4407 27 6 2.5518 -7.9537 0.0491 28 6 2.3271 -6.5766 -0.5953 29 6 1.9342 -3.7313 0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5575 -2.0528 -0.8833 32 1 -0.5543 -2.0839 0.9023 33 1 -1.2983 -4.2520 -0.6750 34 1 -0.6315 -4.4174 0.9825 35 1 -0.0375 -6.9857 -1.7039 36 1 -1.0263 -6.4425 -0.3264 37 1 -0.7014 -8.9473 -0.4053 38 1 -0.0945 -8.2021 1.0969 39 1 3.5188 -10.5818 -0.1472 40 1 3.4430 -9.8892 -1.7851 41 1 1.9531 -15.0034 -1.7270 42 1 3.3679 -14.2894 -3.8198 43 1 2.6447 -7.8451 1.1297 44 1 3.4575 -8.4054 -0.3556 45 1 2.3334 -6.6744 -1.6808 46 1 3.1219 -5.8978 -0.2862 47 1 2.1681 -4.0415 1.0190 48 1 2.8332 -3.7412 -0.6158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046074119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:10 Heat of formation + Delta-G solvation = 47.979713 kcal Electronic energy + Delta-G solvation = -28648.027037 eV Core-core repulsion = 24739.091184 eV Total energy + Delta-G solvation = -3908.935853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.95342 -41.17801 -39.80277 -38.00472 -35.57049 -33.91517 -33.42122 -33.21016 -32.03251 -31.00239 -29.43673 -28.50306 -27.16258 -25.85042 -24.62228 -22.91417 -22.45267 -21.76740 -21.62950 -21.10045 -19.96443 -18.91152 -18.76895 -18.26771 -17.11864 -16.76651 -16.71180 -16.42177 -16.02396 -15.84466 -15.68490 -15.41464 -15.03549 -14.80708 -14.68430 -14.39415 -14.30966 -13.95589 -13.93067 -13.78101 -13.56687 -13.21411 -13.06384 -12.90191 -12.76356 -12.51920 -12.38001 -12.22230 -11.93856 -11.79440 -11.66315 -11.57025 -11.46361 -10.97645 -10.90522 -10.80913 -10.70439 -9.78274 -9.32448 -9.24184 -8.88295 -7.83473 -5.19228 1.09832 1.47195 1.48284 1.58546 1.64296 1.84972 2.26496 2.38179 2.49455 2.83696 3.34980 3.36019 3.62749 3.68065 3.84963 3.96050 4.01656 4.10587 4.11550 4.28330 4.29593 4.36874 4.38346 4.45416 4.47217 4.54232 4.61222 4.68073 4.76413 4.79810 4.80041 4.91060 4.94249 5.00451 5.05932 5.14047 5.16629 5.24230 5.46749 5.47830 5.66816 5.76783 5.84668 6.04977 6.13779 6.22929 6.41722 6.57779 7.11379 7.19329 7.22997 7.79160 8.43635 9.27267 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032773 B = 0.002036 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.161114 B =13746.213371 C =14282.748514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.071 4.071 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.237 4.237 8 H 0.086 0.914 9 N -0.629 5.629 10 C 0.187 3.813 11 C -0.119 4.119 12 C 0.088 3.912 13 H 0.040 0.960 14 N -0.527 5.527 15 C 0.049 3.951 16 C 0.124 3.876 17 N -0.613 5.613 18 C 0.516 3.484 19 O -0.571 6.571 20 C -0.048 4.048 21 C 0.199 3.801 22 N -0.515 5.515 23 C -0.069 4.069 24 C -0.036 4.036 25 N -0.554 5.554 26 H 0.436 0.564 27 C 0.114 3.886 28 C 0.035 3.965 29 C 0.149 3.851 30 H 0.245 0.755 31 H 0.008 0.992 32 H 0.006 0.994 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.176 0.824 42 H 0.215 0.785 43 H 0.087 0.913 44 H 0.126 0.874 45 H 0.038 0.962 46 H 0.096 0.904 47 H 0.033 0.967 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.252 -25.003 -5.819 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.264 4.264 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.366 4.366 8 H 0.104 0.896 9 N -0.356 5.356 10 C 0.061 3.939 11 C -0.157 4.157 12 C -0.021 4.021 13 H 0.057 0.943 14 N -0.253 5.253 15 C -0.080 4.080 16 C 0.001 3.999 17 N -0.346 5.346 18 C 0.304 3.696 19 O -0.449 6.449 20 C -0.089 4.089 21 C -0.066 4.066 22 N -0.235 5.235 23 C -0.217 4.217 24 C -0.171 4.171 25 N -0.160 5.160 26 H 0.277 0.723 27 C -0.008 4.008 28 C -0.093 4.093 29 C 0.023 3.977 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.024 0.976 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.193 0.807 42 H 0.232 0.768 43 H 0.105 0.895 44 H 0.144 0.856 45 H 0.057 0.943 46 H 0.115 0.885 47 H 0.051 0.949 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.293 -25.196 -4.679 27.259 hybrid contribution 0.301 1.494 -1.821 2.374 sum 9.593 -23.702 -6.500 26.383 Atomic orbital electron populations 1.70205 1.06385 1.25115 1.58569 1.25693 0.96635 1.01168 1.02873 0.84993 0.78338 0.79370 0.76538 1.18621 1.22113 1.22139 1.19515 0.91104 0.83547 1.42464 0.89586 1.44765 1.02453 1.01278 1.87054 1.20871 0.83980 0.91512 0.97532 1.22736 0.96704 0.94962 1.01302 1.22512 0.96276 0.87377 0.95918 0.94258 1.61924 1.02837 1.00486 1.60014 1.22410 0.95570 0.92891 0.97087 1.21571 0.84441 0.92973 1.00908 1.48257 1.08329 1.15502 1.62560 1.20744 0.91789 0.80589 0.76481 1.90747 1.43505 1.57233 1.53437 1.20101 0.94942 0.88596 1.05288 1.22694 0.99783 0.96983 0.87098 1.70163 1.20516 1.00143 1.32635 1.22762 1.05362 0.99142 0.94414 1.23286 1.04872 0.85563 1.03392 1.43207 1.42847 1.11028 1.18876 0.72338 1.22208 0.88177 0.88389 1.01979 1.22697 0.91852 0.96799 0.97973 1.21594 0.94378 0.83825 0.97858 0.94521 0.97328 0.97607 0.90843 0.90609 0.95275 0.89217 0.90122 0.90283 0.83960 0.83541 0.80720 0.76835 0.89454 0.85615 0.94337 0.88541 0.94902 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.72 10.31 21.65 0.22 -57.50 16 2 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 3 Si 0.98 45.45 29.55 68.60 2.03 47.48 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 7 C -0.24 -13.13 10.28 84.03 0.86 -12.26 16 8 H 0.09 4.49 7.83 -2.91 -0.02 4.46 16 9 N -0.63 -31.91 3.40 -691.89 -2.35 -34.26 16 10 C 0.19 9.25 5.37 86.73 0.47 9.72 16 11 C -0.12 -4.28 5.32 31.78 0.17 -4.11 16 12 C 0.09 2.85 2.71 46.30 0.13 2.97 16 13 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 14 N -0.53 -13.01 4.53 -861.02 -3.90 -16.91 16 15 C 0.05 1.12 5.48 86.38 0.47 1.60 16 16 C 0.12 2.69 6.60 86.35 0.57 3.26 16 17 N -0.61 -11.50 3.00 -817.04 -2.45 -13.95 16 18 C 0.52 11.10 7.70 87.66 0.67 11.78 16 19 O -0.57 -18.33 15.00 -3.05 -0.05 -18.38 16 20 C -0.05 -0.60 4.69 29.10 0.14 -0.46 16 21 C 0.20 3.73 6.96 138.13 0.96 4.69 16 22 N -0.51 -13.44 10.58 -188.13 -1.99 -15.44 16 23 C -0.07 -1.40 11.87 83.52 0.99 -0.41 16 24 C -0.04 -0.46 12.04 83.09 1.00 0.54 16 25 N -0.55 -6.54 6.15 -186.27 -1.15 -7.69 16 26 H 0.44 1.64 8.96 -92.71 -0.83 0.81 16 27 C 0.11 1.47 6.53 86.50 0.57 2.04 16 28 C 0.04 0.64 5.50 86.54 0.48 1.12 16 29 C 0.15 5.72 5.66 86.84 0.49 6.21 16 30 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.01 0.47 7.38 -2.39 -0.02 0.46 16 32 H 0.01 0.32 7.50 -2.39 -0.02 0.30 16 33 H 0.07 2.39 7.94 -2.39 -0.02 2.37 16 34 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.09 2.07 6.85 -2.39 -0.02 2.05 16 37 H 0.08 1.98 7.06 -2.39 -0.02 1.97 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.14 1.13 7.99 -2.39 -0.02 1.11 16 40 H 0.15 0.57 7.67 -2.38 -0.02 0.55 16 41 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.13 0.60 6.02 -2.39 -0.01 0.59 16 45 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.10 1.74 6.81 -2.39 -0.02 1.73 16 47 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.04 1.59 7.85 -2.39 -0.02 1.57 16 Total: -1.00 -84.36 377.32 -1.06 -85.43 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.14 Total: 8.11 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 8.43 Total: 23.09 kcal Atomic # 7 Polarization: -134.13 SS G_CDS: -11.61 Total: -145.74 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -84.36 -1.06 -85.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046074119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.406 kcal (2) G-P(sol) polarization free energy of solvation -84.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds