Wall clock time and date at job start Tue Mar 31 2020 18:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00225 * 2 1 4 4 H 1.48506 * 109.47117 * 274.45281 * 3 2 1 5 5 H 1.48500 * 109.46954 * 34.44771 * 3 2 1 6 6 H 1.48492 * 109.47322 * 154.45366 * 3 2 1 7 7 C 1.38815 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99985 * 194.24819 * 7 2 1 9 9 N 1.36941 * 119.99992 * 14.24090 * 7 2 1 10 10 C 1.46926 * 120.63036 * 204.41307 * 9 7 2 11 11 C 1.53190 * 108.77739 * 233.63142 * 10 9 7 12 12 C 1.53037 * 109.31410 * 305.37004 * 11 10 9 13 13 C 1.52998 * 109.46039 * 181.38534 * 12 11 10 14 14 H 1.09001 * 109.49855 * 300.06039 * 13 12 11 15 15 C 1.53046 * 109.49558 * 179.97438 * 13 12 11 16 16 C 1.53042 * 109.53841 * 178.68203 * 15 13 12 17 17 C 1.53188 * 109.34022 * 61.34847 * 16 15 13 18 18 N 1.46936 * 108.77411 * 305.41945 * 17 16 15 19 19 C 1.34778 * 120.60246 * 233.53712 * 18 17 16 20 20 O 1.21618 * 120.00020 * 171.61196 * 19 18 17 21 21 C 1.47231 * 120.00311 * 351.60228 * 19 18 17 22 22 C 1.37003 * 127.19191 * 153.96742 * 21 19 18 23 23 N 1.33322 * 106.37304 * 179.90972 * 22 21 19 24 24 N 1.28509 * 109.43878 * 0.36704 * 23 22 21 25 25 N 1.28715 * 110.64045 * 359.76846 * 24 23 22 26 26 H 0.97000 * 126.04109 * 179.97438 * 25 24 23 27 27 C 1.46921 * 118.76479 * 53.54735 * 18 17 16 28 28 C 1.53031 * 109.54246 * 61.35979 * 12 11 10 29 29 C 1.46924 * 120.63034 * 24.43749 * 9 7 2 30 30 H 0.96991 * 119.99967 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.58719 * 113.84308 * 10 9 7 32 32 H 1.09007 * 109.59048 * 353.41717 * 10 9 7 33 33 H 1.08999 * 109.50062 * 185.41007 * 11 10 9 34 34 H 1.09004 * 109.52155 * 65.33134 * 11 10 9 35 35 H 1.09000 * 109.45456 * 301.35343 * 12 11 10 36 36 H 1.09000 * 109.45978 * 58.66119 * 15 13 12 37 37 H 1.08996 * 109.46042 * 298.70456 * 15 13 12 38 38 H 1.09003 * 109.49965 * 181.32105 * 16 15 13 39 39 H 1.09004 * 109.49566 * 301.38244 * 16 15 13 40 40 H 1.08999 * 109.58799 * 65.16702 * 17 16 15 41 41 H 1.09001 * 109.58919 * 185.59623 * 17 16 15 42 42 H 1.07996 * 126.81301 * 0.02562 * 22 21 19 43 43 H 1.09004 * 109.58536 * 186.62926 * 27 18 17 44 44 H 1.08997 * 109.58449 * 66.20833 * 27 18 17 45 45 H 1.09001 * 109.49916 * 58.59113 * 28 12 11 46 46 H 1.09000 * 109.50403 * 178.69018 * 28 12 11 47 47 H 1.09000 * 109.58746 * 246.15469 * 29 9 7 48 48 H 1.09000 * 109.58611 * 6.58014 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4036 2.1007 -1.3959 5 1 1.4979 2.6236 0.7920 6 1 3.5916 1.4148 0.6037 7 6 2.0102 -1.2022 0.0005 8 1 3.0653 -1.2165 0.2308 9 7 1.3571 -2.3700 -0.2907 10 6 1.8703 -3.6569 0.1985 11 6 2.0261 -4.6098 -0.9908 12 6 0.6946 -4.7076 -1.7389 13 6 0.8369 -5.6853 -2.9071 14 1 1.6112 -5.3297 -3.5869 15 6 -0.4945 -5.7841 -3.6554 16 6 -0.3441 -6.7367 -4.8438 17 6 0.0275 -8.1318 -4.3318 18 7 1.2266 -8.0226 -3.4896 19 6 2.3107 -8.7840 -3.7374 20 8 3.3474 -8.5803 -3.1350 21 6 2.2401 -9.8624 -4.7373 22 6 3.2762 -10.3869 -5.4643 23 7 2.7497 -11.3367 -6.2376 24 7 1.4838 -11.4062 -6.0276 25 7 1.1233 -10.5471 -5.1396 26 1 0.2205 -10.4085 -4.8129 27 6 1.2214 -7.0684 -2.3725 28 6 0.3053 -3.3276 -2.2735 29 6 0.1300 -2.3600 -1.0987 30 1 -0.4849 0.8400 -0.0004 31 1 1.1688 -4.0808 0.9169 32 1 2.8389 -3.5065 0.6755 33 1 2.3144 -5.5973 -0.6304 34 1 2.7945 -4.2296 -1.6640 35 1 -0.0786 -5.0647 -1.0586 36 1 -0.7827 -4.7966 -4.0158 37 1 -1.2627 -6.1629 -2.9813 38 1 -1.2860 -6.7885 -5.3900 39 1 0.4408 -6.3712 -5.5060 40 1 -0.7960 -8.5365 -3.7434 41 1 0.2326 -8.7887 -5.1771 42 1 4.3138 -10.0910 -5.4184 43 1 2.2144 -7.0241 -1.9252 44 1 0.4952 -7.3858 -1.6242 45 1 1.0897 -2.9589 -2.9344 46 1 -0.6313 -3.4023 -2.8260 47 1 -0.7135 -2.6782 -0.4861 48 1 -0.0498 -1.3539 -1.4775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047246024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:46 Heat of formation + Delta-G solvation = 84.697095 kcal Electronic energy + Delta-G solvation = -29400.287446 eV Core-core repulsion = 25492.943778 eV Total energy + Delta-G solvation = -3907.343668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.86373 -40.56941 -38.58635 -37.04164 -34.70608 -33.73813 -32.70525 -31.95238 -31.33860 -30.03584 -29.08280 -26.48223 -25.50331 -24.12278 -23.68318 -23.10844 -22.14172 -21.48906 -21.04791 -19.98946 -19.15911 -18.47037 -17.45311 -16.88135 -16.74124 -16.42436 -15.47841 -15.03338 -14.83693 -14.71141 -14.44295 -14.14649 -14.02199 -13.68465 -13.45009 -13.35649 -13.15539 -12.92177 -12.61160 -12.39031 -12.19047 -11.75513 -11.67766 -11.55752 -11.34974 -11.13695 -11.00848 -10.92388 -10.75206 -10.62439 -10.57637 -10.33923 -10.13747 -10.13284 -9.96666 -9.85882 -9.47404 -9.37967 -9.01220 -8.45979 -6.69261 -5.75606 -3.18199 0.47394 1.81697 1.95350 2.31732 2.65556 3.37545 3.44552 3.45887 3.69440 4.08229 4.14375 4.45599 4.49858 4.52793 4.58020 4.71296 4.76421 4.84688 4.95017 5.19432 5.32890 5.38606 5.40787 5.45779 5.51976 5.55236 5.66306 5.72662 5.78636 5.86489 5.91071 6.00911 6.06096 6.11869 6.22736 6.30587 6.36160 6.54563 6.63617 6.72138 6.80220 6.82252 6.87921 7.01360 7.43976 7.53314 7.73032 7.80790 7.81266 8.46733 9.23480 9.87209 10.41050 11.30830 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.002409 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.784275 B =11618.566058 C =12076.935367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.005 4.005 3 Si 0.904 3.096 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.067 0.933 9 N -0.594 5.594 10 C 0.145 3.855 11 C -0.130 4.130 12 C -0.069 4.069 13 C -0.096 4.096 14 H 0.074 0.926 15 C -0.118 4.118 16 C -0.132 4.132 17 C 0.090 3.910 18 N -0.605 5.605 19 C 0.593 3.407 20 O -0.508 6.508 21 C -0.059 4.059 22 C 0.029 3.971 23 N -0.267 5.267 24 N -0.051 5.051 25 N -0.378 5.378 26 H 0.452 0.548 27 C 0.116 3.884 28 C -0.134 4.134 29 C 0.163 3.837 30 H 0.252 0.748 31 H 0.016 0.984 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.204 0.796 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.013 0.987 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 -19.305 -10.551 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.085 0.915 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.169 4.169 12 C -0.089 4.089 13 C -0.115 4.115 14 H 0.092 0.908 15 C -0.156 4.156 16 C -0.170 4.170 17 C -0.033 4.033 18 N -0.338 5.338 19 C 0.377 3.623 20 O -0.381 6.381 21 C -0.193 4.193 22 C -0.130 4.130 23 N -0.133 5.133 24 N -0.033 5.033 25 N -0.108 5.108 26 H 0.302 0.698 27 C -0.005 4.005 28 C -0.173 4.173 29 C 0.038 3.962 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.221 0.779 43 H 0.120 0.880 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.031 0.969 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.825 -20.167 -11.155 23.219 hybrid contribution 0.028 1.759 0.834 1.947 sum -2.796 -18.408 -10.320 21.288 Atomic orbital electron populations 1.69970 1.05137 1.25192 1.55197 1.24975 0.95414 0.98235 1.01617 0.86223 0.79035 0.83708 0.77539 1.21590 1.21805 1.20473 1.19294 0.91933 0.84526 1.41487 0.91536 1.44113 1.28258 1.01228 1.58103 1.20886 0.97290 0.87077 0.92883 1.22115 0.96605 0.98871 0.99341 1.21027 0.98039 0.95002 0.94797 1.21622 0.97474 0.94007 0.98388 0.90798 1.21664 0.97606 1.00019 0.96271 1.21901 1.02278 0.93955 0.98911 1.22109 0.87660 0.99547 0.94029 1.48097 1.13974 1.39860 1.31890 1.16839 0.83943 0.80441 0.81077 1.90896 1.28634 1.69524 1.49048 1.22393 0.88126 1.02970 1.05822 1.23938 1.00911 0.94080 0.94050 1.75002 0.99637 1.17441 1.21181 1.78222 1.09328 1.10193 1.05586 1.46160 1.11427 1.25103 1.28153 0.69763 1.21964 1.04240 0.87487 0.86800 1.22273 0.99491 0.95199 1.00363 1.20977 0.87108 0.99263 0.88884 0.93737 0.96654 0.92994 0.93153 0.92334 0.91850 0.90362 0.91631 0.90351 0.91191 0.90341 0.90846 0.77873 0.88031 0.90891 0.92905 0.93260 0.96931 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.02 10.74 55.49 0.60 -25.42 16 2 C -0.01 -0.15 5.03 -17.43 -0.09 -0.23 16 3 Si 0.90 21.67 29.58 -169.99 -5.03 16.65 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.62 9.65 -15.06 -0.15 -6.76 16 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 9 N -0.59 -14.63 3.01 -172.31 -0.52 -15.15 16 10 C 0.15 2.97 6.52 -3.71 -0.02 2.94 16 11 C -0.13 -2.14 5.05 -26.61 -0.13 -2.28 16 12 C -0.07 -1.03 1.74 -90.59 -0.16 -1.18 16 13 C -0.10 -1.10 1.92 -90.50 -0.17 -1.27 16 14 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 15 C -0.12 -1.09 4.85 -26.69 -0.13 -1.22 16 16 C -0.13 -0.92 6.08 -26.61 -0.16 -1.08 16 17 C 0.09 0.53 5.35 -3.71 -0.02 0.51 16 18 N -0.60 -5.44 2.97 -174.11 -0.52 -5.96 16 19 C 0.59 6.33 7.63 -12.61 -0.10 6.23 16 20 O -0.51 -7.23 16.44 5.26 0.09 -7.15 16 21 C -0.06 -0.53 6.37 -82.33 -0.52 -1.05 16 22 C 0.03 0.28 11.96 -17.35 -0.21 0.07 16 23 N -0.27 -2.88 12.35 30.47 0.38 -2.50 16 24 N -0.05 -0.49 13.35 60.35 0.81 0.32 16 25 N -0.38 -2.65 5.73 33.31 0.19 -2.46 16 26 H 0.45 1.65 6.80 -190.33 -1.29 0.36 16 27 C 0.12 1.22 5.20 -3.72 -0.02 1.20 16 28 C -0.13 -2.37 5.05 -26.61 -0.13 -2.50 16 29 C 0.16 3.77 5.35 -3.71 -0.02 3.75 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 33 H 0.05 0.72 6.50 -51.93 -0.34 0.38 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.80 6.33 -51.93 -0.33 0.48 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.35 4.52 -51.93 -0.23 0.11 16 42 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.10 1.27 5.59 -51.93 -0.29 0.98 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.05 0.77 6.33 -51.93 -0.33 0.44 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.10 2.65 5.65 -51.93 -0.29 2.36 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -32.37 366.65 -8.66 -41.03 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -8.14 Total: -2.00 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.04 Total: -2.87 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.93 Total: -51.18 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.09 Total: -7.15 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.37 -8.66 -41.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047246024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.722 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds