Wall clock time and date at job start Tue Mar 31 2020 18:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00225 * 2 1 4 4 H 1.48506 * 109.47117 * 274.45281 * 3 2 1 5 5 H 1.48500 * 109.46954 * 34.44771 * 3 2 1 6 6 H 1.48492 * 109.47322 * 154.45366 * 3 2 1 7 7 C 1.38815 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99985 * 194.24819 * 7 2 1 9 9 N 1.36941 * 119.99992 * 14.24090 * 7 2 1 10 10 C 1.46926 * 120.63036 * 204.41307 * 9 7 2 11 11 C 1.53190 * 108.77739 * 233.63142 * 10 9 7 12 12 C 1.53037 * 109.31410 * 305.37004 * 11 10 9 13 13 C 1.52998 * 109.46039 * 181.38534 * 12 11 10 14 14 H 1.09001 * 109.49855 * 300.06039 * 13 12 11 15 15 C 1.53046 * 109.49558 * 179.97438 * 13 12 11 16 16 C 1.53042 * 109.53841 * 178.68203 * 15 13 12 17 17 C 1.53188 * 109.34022 * 61.34847 * 16 15 13 18 18 N 1.46936 * 108.77411 * 305.41945 * 17 16 15 19 19 C 1.34778 * 120.60246 * 233.53712 * 18 17 16 20 20 O 1.21618 * 120.00020 * 171.61196 * 19 18 17 21 21 C 1.47231 * 120.00311 * 351.60228 * 19 18 17 22 22 C 1.37003 * 127.19191 * 153.96742 * 21 19 18 23 23 N 1.33322 * 106.37304 * 179.90972 * 22 21 19 24 24 N 1.28509 * 109.43878 * 0.36704 * 23 22 21 25 25 N 1.28715 * 110.64045 * 359.76846 * 24 23 22 26 26 H 0.97000 * 126.04109 * 179.97438 * 25 24 23 27 27 C 1.46921 * 118.76479 * 53.54735 * 18 17 16 28 28 C 1.53031 * 109.54246 * 61.35979 * 12 11 10 29 29 C 1.46924 * 120.63034 * 24.43749 * 9 7 2 30 30 H 0.96991 * 119.99967 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.58719 * 113.84308 * 10 9 7 32 32 H 1.09007 * 109.59048 * 353.41717 * 10 9 7 33 33 H 1.08999 * 109.50062 * 185.41007 * 11 10 9 34 34 H 1.09004 * 109.52155 * 65.33134 * 11 10 9 35 35 H 1.09000 * 109.45456 * 301.35343 * 12 11 10 36 36 H 1.09000 * 109.45978 * 58.66119 * 15 13 12 37 37 H 1.08996 * 109.46042 * 298.70456 * 15 13 12 38 38 H 1.09003 * 109.49965 * 181.32105 * 16 15 13 39 39 H 1.09004 * 109.49566 * 301.38244 * 16 15 13 40 40 H 1.08999 * 109.58799 * 65.16702 * 17 16 15 41 41 H 1.09001 * 109.58919 * 185.59623 * 17 16 15 42 42 H 1.07996 * 126.81301 * 0.02562 * 22 21 19 43 43 H 1.09004 * 109.58536 * 186.62926 * 27 18 17 44 44 H 1.08997 * 109.58449 * 66.20833 * 27 18 17 45 45 H 1.09001 * 109.49916 * 58.59113 * 28 12 11 46 46 H 1.09000 * 109.50403 * 178.69018 * 28 12 11 47 47 H 1.09000 * 109.58746 * 246.15469 * 29 9 7 48 48 H 1.09000 * 109.58611 * 6.58014 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4036 2.1007 -1.3959 5 1 1.4979 2.6236 0.7920 6 1 3.5916 1.4148 0.6037 7 6 2.0102 -1.2022 0.0005 8 1 3.0653 -1.2165 0.2308 9 7 1.3571 -2.3700 -0.2907 10 6 1.8703 -3.6569 0.1985 11 6 2.0261 -4.6098 -0.9908 12 6 0.6946 -4.7076 -1.7389 13 6 0.8369 -5.6853 -2.9071 14 1 1.6112 -5.3297 -3.5869 15 6 -0.4945 -5.7841 -3.6554 16 6 -0.3441 -6.7367 -4.8438 17 6 0.0275 -8.1318 -4.3318 18 7 1.2266 -8.0226 -3.4896 19 6 2.3107 -8.7840 -3.7374 20 8 3.3474 -8.5803 -3.1350 21 6 2.2401 -9.8624 -4.7373 22 6 3.2762 -10.3869 -5.4643 23 7 2.7497 -11.3367 -6.2376 24 7 1.4838 -11.4062 -6.0276 25 7 1.1233 -10.5471 -5.1396 26 1 0.2205 -10.4085 -4.8129 27 6 1.2214 -7.0684 -2.3725 28 6 0.3053 -3.3276 -2.2735 29 6 0.1300 -2.3600 -1.0987 30 1 -0.4849 0.8400 -0.0004 31 1 1.1688 -4.0808 0.9169 32 1 2.8389 -3.5065 0.6755 33 1 2.3144 -5.5973 -0.6304 34 1 2.7945 -4.2296 -1.6640 35 1 -0.0786 -5.0647 -1.0586 36 1 -0.7827 -4.7966 -4.0158 37 1 -1.2627 -6.1629 -2.9813 38 1 -1.2860 -6.7885 -5.3900 39 1 0.4408 -6.3712 -5.5060 40 1 -0.7960 -8.5365 -3.7434 41 1 0.2326 -8.7887 -5.1771 42 1 4.3138 -10.0910 -5.4184 43 1 2.2144 -7.0241 -1.9252 44 1 0.4952 -7.3858 -1.6242 45 1 1.0897 -2.9589 -2.9344 46 1 -0.6313 -3.4023 -2.8260 47 1 -0.7135 -2.6782 -0.4861 48 1 -0.0498 -1.3539 -1.4775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047246024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:45 Heat of formation + Delta-G solvation = 63.564394 kcal Electronic energy + Delta-G solvation = -29401.203829 eV Core-core repulsion = 25492.943778 eV Total energy + Delta-G solvation = -3908.260051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.55372 -41.39443 -39.76718 -38.22278 -35.92591 -34.71954 -33.79035 -32.87216 -32.54196 -31.56547 -30.49694 -27.33680 -27.03258 -24.94088 -24.86673 -23.99434 -23.41464 -22.69887 -21.97222 -20.90081 -20.68277 -19.21497 -18.66741 -18.16758 -17.51618 -17.29118 -16.85723 -16.26460 -15.78255 -15.66819 -15.41240 -15.27667 -15.25491 -14.97151 -14.82607 -14.50464 -14.15920 -14.11430 -13.79768 -13.56550 -13.32512 -13.11880 -12.88927 -12.68405 -12.59128 -12.43022 -12.21115 -12.06680 -11.96576 -11.92724 -11.78520 -11.70044 -11.57428 -11.48132 -11.31376 -10.98367 -10.78826 -10.69076 -10.51156 -9.80229 -8.68702 -7.83746 -5.29130 -0.22911 1.09989 1.30691 1.45398 1.46503 1.55605 1.58394 1.94681 2.50864 3.04064 3.27774 3.42250 3.57145 3.73398 3.79225 3.81172 3.84436 3.95663 4.02362 4.10402 4.20465 4.31603 4.37928 4.50209 4.57117 4.60682 4.71218 4.76678 4.78409 4.85002 4.86687 4.90361 5.03319 5.03647 5.09714 5.13516 5.27969 5.33123 5.40492 5.41558 5.45724 5.53647 5.58600 5.59160 5.71531 5.88252 6.07935 6.41693 6.75257 7.10765 7.16992 7.90373 8.37840 9.19751 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.002409 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.784275 B =11618.566058 C =12076.935367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.057 4.057 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.614 5.614 10 C 0.139 3.861 11 C -0.119 4.119 12 C -0.061 4.061 13 C -0.084 4.084 14 H 0.055 0.945 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.086 3.914 18 N -0.599 5.599 19 C 0.594 3.406 20 O -0.551 6.551 21 C -0.058 4.058 22 C 0.024 3.976 23 N -0.293 5.293 24 N -0.057 5.057 25 N -0.353 5.353 26 H 0.468 0.532 27 C 0.119 3.881 28 C -0.119 4.119 29 C 0.167 3.833 30 H 0.249 0.751 31 H 0.017 0.983 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.216 0.784 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.037 0.963 46 H 0.074 0.926 47 H -0.005 1.005 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 -21.208 -11.567 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.251 4.251 3 Si 0.795 3.205 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.386 4.386 8 H 0.081 0.919 9 N -0.338 5.338 10 C 0.014 3.986 11 C -0.158 4.158 12 C -0.080 4.080 13 C -0.103 4.103 14 H 0.074 0.926 15 C -0.155 4.155 16 C -0.166 4.166 17 C -0.036 4.036 18 N -0.330 5.330 19 C 0.380 3.620 20 O -0.427 6.427 21 C -0.193 4.193 22 C -0.135 4.135 23 N -0.158 5.158 24 N -0.039 5.039 25 N -0.086 5.086 26 H 0.322 0.678 27 C -0.002 4.002 28 C -0.158 4.158 29 C 0.042 3.958 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.131 0.869 41 H 0.105 0.895 42 H 0.232 0.768 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.013 0.987 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.925 -22.104 -12.192 25.547 hybrid contribution 0.326 2.355 1.194 2.661 sum -3.599 -19.749 -10.998 22.889 Atomic orbital electron populations 1.70139 1.06365 1.25507 1.56351 1.25698 0.96225 1.01176 1.02022 0.85247 0.78078 0.79791 0.77345 1.21368 1.22016 1.19589 1.19581 0.92113 0.85943 1.40980 0.91856 1.44397 1.28533 1.01963 1.58887 1.21060 0.96687 0.86263 0.94582 1.21972 0.97363 0.98902 0.97515 1.20914 0.96987 0.94125 0.95991 1.21417 0.98614 0.93581 0.96681 0.92613 1.21649 0.96217 1.00381 0.97210 1.21871 1.03236 0.93663 0.97790 1.22410 0.87203 0.99434 0.94583 1.48116 1.14541 1.38753 1.31633 1.16963 0.83626 0.80658 0.80759 1.90880 1.30305 1.70785 1.50734 1.22094 0.88664 1.02896 1.05647 1.24234 1.01779 0.93721 0.93779 1.75005 1.00202 1.18346 1.22198 1.78169 1.09105 1.10558 1.06082 1.46107 1.11787 1.23766 1.26960 0.67835 1.21816 1.03618 0.87215 0.87569 1.22052 1.00344 0.95507 0.97898 1.20808 0.86177 0.98716 0.90127 0.94177 0.96481 0.93619 0.90413 0.93823 0.91076 0.91456 0.90080 0.87699 0.92593 0.86909 0.89524 0.76784 0.90133 0.88895 0.94376 0.90803 0.98736 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.22 10.74 21.65 0.23 -54.98 16 2 C -0.06 -3.20 5.03 84.86 0.43 -2.78 16 3 Si 0.97 45.41 29.58 68.60 2.03 47.44 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.26 -14.29 9.65 84.03 0.81 -13.48 16 8 H 0.06 3.49 7.85 -2.91 -0.02 3.46 16 9 N -0.61 -30.99 3.01 -699.08 -2.11 -33.10 16 10 C 0.14 5.75 6.52 86.36 0.56 6.31 16 11 C -0.12 -3.83 5.05 30.67 0.15 -3.67 16 12 C -0.06 -1.72 1.74 -10.77 -0.02 -1.74 16 13 C -0.08 -1.74 1.92 -10.72 -0.02 -1.76 16 14 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 15 C -0.12 -1.78 4.85 30.62 0.15 -1.63 16 16 C -0.13 -1.28 6.08 30.67 0.19 -1.09 16 17 C 0.09 0.63 5.35 86.36 0.46 1.10 16 18 N -0.60 -9.03 2.97 -823.01 -2.45 -11.48 16 19 C 0.59 11.60 7.63 86.61 0.66 12.26 16 20 O -0.55 -15.32 16.44 -4.09 -0.07 -15.38 16 21 C -0.06 -0.92 6.37 40.40 0.26 -0.67 16 22 C 0.02 0.43 11.96 84.18 1.01 1.44 16 23 N -0.29 -5.88 12.35 -57.50 -0.71 -6.59 16 24 N -0.06 -0.97 13.35 37.02 0.49 -0.47 16 25 N -0.35 -3.90 5.73 -48.52 -0.28 -4.18 16 26 H 0.47 1.55 6.80 -219.90 -1.50 0.06 16 27 C 0.12 2.20 5.20 86.36 0.45 2.65 16 28 C -0.12 -4.17 5.05 30.67 0.15 -4.02 16 29 C 0.17 7.93 5.35 86.37 0.46 8.39 16 30 H 0.25 14.20 8.31 -92.72 -0.77 13.43 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 1.89 7.92 -2.38 -0.02 1.87 16 33 H 0.08 2.11 6.50 -2.39 -0.02 2.09 16 34 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 1.20 6.33 -2.39 -0.02 1.18 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.09 0.44 4.52 -2.39 -0.01 0.43 16 42 H 0.22 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.08 1.88 5.59 -2.38 -0.01 1.87 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.07 2.21 6.33 -2.39 -0.02 2.20 16 47 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 48 H 0.06 3.50 5.65 -2.39 -0.01 3.49 16 Total: -1.00 -73.37 366.65 2.34 -71.02 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -0.51 Total: 6.42 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.70 Total: 1.31 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.81 Total: -110.80 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.07 Total: -15.38 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -73.37 2.34 -71.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047246024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.586 kcal (2) G-P(sol) polarization free energy of solvation -73.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds