Wall clock time and date at job start Tue Mar 31 2020 18:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00254 * 2 1 4 4 H 1.48499 * 109.46946 * 240.00256 * 3 2 1 5 5 H 1.48508 * 109.46735 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47295 * 120.00035 * 3 2 1 7 7 C 1.38816 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99911 * 197.01794 * 7 2 1 9 9 N 1.36940 * 119.99546 * 17.01625 * 7 2 1 10 10 C 1.47083 * 120.87614 * 206.58555 * 9 7 2 11 11 C 1.53239 * 108.51909 * 231.16215 * 10 9 7 12 12 N 1.46897 * 109.34252 * 306.17534 * 11 10 9 13 13 C 1.46899 * 111.00177 * 187.25427 * 12 11 10 14 14 H 1.09001 * 110.88709 * 303.87485 * 13 12 11 15 15 C 1.55154 * 111.04058 * 67.78383 * 13 12 11 16 16 C 1.54326 * 103.02556 * 153.39723 * 15 13 12 17 17 N 1.47025 * 107.26547 * 338.13996 * 16 15 13 18 18 C 1.34776 * 125.64711 * 178.84881 * 17 16 15 19 19 O 1.21289 * 119.99655 * 179.69591 * 18 17 16 20 20 C 1.50699 * 120.00212 * 359.69353 * 18 17 16 21 21 C 1.50698 * 109.46956 * 179.97438 * 20 18 17 22 22 C 1.39879 * 125.89932 * 125.01370 * 21 20 18 23 23 C 1.35312 * 107.91958 * 179.97438 * 22 21 20 24 24 N 1.34947 * 107.74709 * 0.02562 * 23 22 21 25 25 H 0.97007 * 126.03345 * 180.02562 * 24 23 22 26 26 N 1.30838 * 125.90367 * 304.97574 * 21 20 18 27 27 C 1.47419 * 108.69982 * 358.58563 * 17 16 15 28 28 C 1.46892 * 111.27125 * 63.10167 * 12 11 10 29 29 C 1.47073 * 120.88292 * 26.56809 * 9 7 2 30 30 H 0.97002 * 119.99873 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.62510 * 111.45691 * 10 9 7 32 32 H 1.08997 * 109.79081 * 350.96960 * 10 9 7 33 33 H 1.09006 * 109.49575 * 186.21313 * 11 10 9 34 34 H 1.09000 * 109.49402 * 66.13563 * 11 10 9 35 35 H 1.09005 * 110.72261 * 271.96035 * 15 13 12 36 36 H 1.09008 * 110.72050 * 35.04645 * 15 13 12 37 37 H 1.08998 * 109.99505 * 218.66691 * 16 15 13 38 38 H 1.09000 * 109.78416 * 97.49689 * 16 15 13 39 39 H 1.08997 * 109.46830 * 59.99983 * 20 18 17 40 40 H 1.09002 * 109.47018 * 299.99658 * 20 18 17 41 41 H 1.08000 * 126.03574 * 359.95173 * 22 21 20 42 42 H 1.07998 * 126.12354 * 180.02562 * 23 22 21 43 43 H 1.09000 * 110.36414 * 143.19223 * 27 17 16 44 44 H 1.08997 * 110.36794 * 265.51780 * 27 17 16 45 45 H 1.08999 * 109.49454 * 56.85911 * 28 12 11 46 46 H 1.09008 * 109.49562 * 176.93639 * 28 12 11 47 47 H 1.09011 * 109.62899 * 248.54231 * 29 9 7 48 48 H 1.09000 * 109.63507 * 9.12146 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0548 -1.2225 0.2743 9 7 1.3705 -2.3623 -0.3460 10 6 1.8309 -3.6609 0.1686 11 6 2.0023 -4.6201 -1.0140 12 7 0.7547 -4.6656 -1.7882 13 6 0.8182 -5.7008 -2.8286 14 1 1.6773 -5.5440 -3.4810 15 6 0.8476 -7.1197 -2.2016 16 6 0.2340 -8.0021 -3.3090 17 7 -0.5608 -7.1220 -4.1780 18 6 -1.2397 -7.5077 -5.2766 19 8 -1.8691 -6.6928 -5.9177 20 6 -1.2169 -8.9513 -5.7083 21 6 -2.0487 -9.1162 -6.9541 22 6 -1.6154 -9.6734 -8.1618 23 6 -2.6526 -9.6425 -9.0303 24 7 -3.7046 -9.0850 -8.3951 25 1 -4.5851 -8.9344 -8.7732 26 7 -3.3010 -8.7636 -7.0928 27 6 -0.4974 -5.7490 -3.6451 28 6 0.4400 -3.3538 -2.3694 29 6 0.2047 -2.3426 -1.2423 30 1 -0.4850 0.8401 0.0004 31 1 1.0920 -4.0628 0.8619 32 1 2.7849 -3.5375 0.6812 33 1 2.2363 -5.6178 -0.6424 34 1 2.8136 -4.2697 -1.6520 35 1 1.8716 -7.4246 -1.9853 36 1 0.2375 -7.1552 -1.2990 37 1 -0.4079 -8.7636 -2.8660 38 1 1.0284 -8.4745 -3.8869 39 1 -1.6262 -9.5748 -4.9134 40 1 -0.1898 -9.2528 -5.9142 41 1 -0.6276 -10.0597 -8.3651 42 1 -2.6405 -9.9999 -10.0494 43 1 -0.4643 -5.0267 -4.4608 44 1 -1.3526 -5.5532 -2.9983 45 1 1.2731 -3.0209 -2.9885 46 1 -0.4590 -3.4329 -2.9807 47 1 -0.6907 -2.6178 -0.6847 48 1 0.0841 -1.3450 -1.6647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052002713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:47 Heat of formation + Delta-G solvation = 85.567667 kcal Electronic energy + Delta-G solvation = -28568.913701 eV Core-core repulsion = 24661.607784 eV Total energy + Delta-G solvation = -3907.305917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43070 -40.07760 -38.41425 -36.73183 -34.15317 -33.20775 -31.61491 -30.72732 -30.17776 -29.83973 -29.18159 -28.00490 -25.84108 -23.75711 -22.85681 -22.28118 -21.75300 -20.61856 -20.17639 -19.13320 -18.92761 -18.36221 -17.22417 -17.02662 -16.28967 -15.62160 -15.11012 -14.73719 -14.69488 -14.33583 -13.99593 -13.92003 -13.89895 -13.79615 -13.47642 -13.36794 -13.10221 -13.03050 -12.72885 -12.57089 -12.35814 -12.13729 -11.73948 -11.41846 -11.16097 -11.01604 -10.87738 -10.83354 -10.70155 -10.44547 -10.28066 -10.02047 -9.95290 -9.70859 -9.60212 -9.56709 -8.97485 -8.67769 -8.48388 -7.87495 -6.65006 -5.75952 -3.17192 1.67978 2.41074 2.60829 2.64388 2.98241 3.39930 3.45989 3.46834 4.24582 4.26612 4.34139 4.52093 4.54616 4.62914 4.82875 4.84587 4.97931 5.12482 5.26412 5.31087 5.35793 5.41702 5.45896 5.46571 5.48644 5.69481 5.76264 5.84712 5.88459 5.93310 5.98541 6.09111 6.16758 6.19596 6.30074 6.34731 6.35426 6.53872 6.70690 6.93174 7.03008 7.25262 7.43728 7.46990 7.58556 7.65691 7.71163 7.83020 8.13877 8.45583 9.23217 9.86743 10.45030 11.32805 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.002144 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.409237 B =13059.460302 C =13845.859413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.046 3.954 12 N -0.521 5.521 13 C 0.069 3.931 14 H 0.050 0.950 15 C -0.123 4.123 16 C 0.101 3.899 17 N -0.620 5.620 18 C 0.530 3.470 19 O -0.523 6.523 20 C -0.054 4.054 21 C 0.084 3.916 22 C -0.267 4.267 23 C 0.053 3.947 24 N -0.477 5.477 25 H 0.439 0.561 26 N -0.260 5.260 27 C 0.117 3.883 28 C 0.032 3.968 29 C 0.179 3.821 30 H 0.255 0.745 31 H 0.025 0.975 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.148 0.852 42 H 0.176 0.824 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.026 0.974 46 H 0.063 0.937 47 H 0.027 0.973 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 -23.992 -14.124 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.084 4.084 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.068 0.932 15 C -0.161 4.161 16 C -0.022 4.022 17 N -0.356 5.356 18 C 0.317 3.683 19 O -0.399 6.399 20 C -0.096 4.096 21 C -0.084 4.084 22 C -0.296 4.296 23 C -0.094 4.094 24 N -0.186 5.186 25 H 0.282 0.718 26 N -0.084 5.084 27 C -0.006 4.006 28 C -0.097 4.097 29 C 0.053 3.947 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.165 0.835 42 H 0.193 0.807 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.044 0.956 46 H 0.081 0.919 47 H 0.045 0.955 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.996 -23.013 -13.652 26.925 hybrid contribution 1.415 0.738 -1.254 2.030 sum -1.581 -22.275 -14.906 26.849 Atomic orbital electron populations 1.70018 1.05187 1.25605 1.53912 1.25029 0.95311 0.98355 1.01052 0.86368 0.78890 0.83438 0.78054 1.21136 1.21623 1.20914 1.19136 0.92534 0.84807 1.41756 0.91718 1.44111 1.34145 1.01251 1.52348 1.20962 0.97773 0.86489 0.92530 1.22625 0.89374 0.99471 0.96902 1.62023 1.34454 1.05480 1.22643 1.22742 0.95908 0.92651 0.92809 0.93212 1.22680 1.01622 0.93646 0.98133 1.22087 0.94609 0.93617 0.91882 1.48434 1.50301 1.10408 1.26440 1.19991 0.78727 0.90323 0.79262 1.90766 1.41515 1.54161 1.53412 1.19991 1.00442 0.94819 0.94328 1.21567 0.92425 0.98683 0.95700 1.21384 1.01178 1.13539 0.93519 1.22553 0.88378 0.99150 0.99304 1.46399 1.12909 1.48986 1.10257 0.71768 1.77428 1.14074 1.20772 0.96081 1.22228 0.98201 0.82855 0.97302 1.22961 0.98822 0.89126 0.98776 1.20864 0.88954 0.96564 0.88362 0.93545 0.95673 0.92639 0.91870 0.95421 0.90235 0.89207 0.91110 0.91399 0.87250 0.86995 0.83457 0.80722 0.90648 0.90150 0.95597 0.91852 0.95493 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 11.15 55.49 0.62 -25.84 16 2 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 3 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.97 9.63 -15.06 -0.15 -7.12 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.60 -15.05 3.04 -172.01 -0.52 -15.58 16 10 C 0.15 3.11 6.69 -3.60 -0.02 3.09 16 11 C 0.05 0.78 5.52 -3.70 -0.02 0.76 16 12 N -0.52 -8.86 4.53 -223.78 -1.01 -9.87 16 13 C 0.07 0.93 2.72 -65.56 -0.18 0.76 16 14 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.12 -1.24 5.62 -24.90 -0.14 -1.38 16 16 C 0.10 0.86 6.49 -3.06 -0.02 0.84 16 17 N -0.62 -7.53 3.33 -170.52 -0.57 -8.10 16 18 C 0.53 7.10 7.84 -10.99 -0.09 7.01 16 19 O -0.52 -9.47 15.82 5.55 0.09 -9.38 16 20 C -0.05 -0.50 5.47 -29.04 -0.16 -0.66 16 21 C 0.08 0.96 6.01 -82.40 -0.50 0.46 16 22 C -0.27 -2.35 10.72 -40.01 -0.43 -2.78 16 23 C 0.05 0.39 11.99 -17.22 -0.21 0.18 16 24 N -0.48 -4.32 7.36 30.44 0.22 -4.10 16 25 H 0.44 2.55 8.96 -182.61 -1.64 0.91 16 26 N -0.26 -3.42 12.05 33.67 0.41 -3.02 16 27 C 0.12 1.66 5.03 -2.53 -0.01 1.65 16 28 C 0.03 0.63 5.42 -3.71 -0.02 0.61 16 29 C 0.18 4.34 5.42 -3.61 -0.02 4.32 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 33 H 0.06 0.89 7.11 -51.93 -0.37 0.52 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.68 7.97 -51.93 -0.41 0.27 16 36 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.11 0.69 8.12 -51.93 -0.42 0.26 16 41 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.08 1.19 7.77 -51.93 -0.40 0.79 16 44 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.16 6.60 -51.92 -0.34 0.82 16 47 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 48 H 0.09 2.40 6.12 -51.93 -0.32 2.08 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -36.20 382.01 -11.02 -47.22 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.94 Total: -1.61 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -2.04 Total: 7.69 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.85 Total: -66.51 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.20 -11.02 -47.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052002713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.789 kcal (2) G-P(sol) polarization free energy of solvation -36.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds