Wall clock time and date at job start Tue Mar 31 2020 18:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00254 * 2 1 4 4 H 1.48499 * 109.46946 * 240.00256 * 3 2 1 5 5 H 1.48508 * 109.46735 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47295 * 120.00035 * 3 2 1 7 7 C 1.38816 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99911 * 197.01794 * 7 2 1 9 9 N 1.36940 * 119.99546 * 17.01625 * 7 2 1 10 10 C 1.47083 * 120.87614 * 206.58555 * 9 7 2 11 11 C 1.53239 * 108.51909 * 231.16215 * 10 9 7 12 12 N 1.46897 * 109.34252 * 306.17534 * 11 10 9 13 13 C 1.46899 * 111.00177 * 187.25427 * 12 11 10 14 14 H 1.09001 * 110.88709 * 303.87485 * 13 12 11 15 15 C 1.55154 * 111.04058 * 67.78383 * 13 12 11 16 16 C 1.54326 * 103.02556 * 153.39723 * 15 13 12 17 17 N 1.47025 * 107.26547 * 338.13996 * 16 15 13 18 18 C 1.34776 * 125.64711 * 178.84881 * 17 16 15 19 19 O 1.21289 * 119.99655 * 179.69591 * 18 17 16 20 20 C 1.50699 * 120.00212 * 359.69353 * 18 17 16 21 21 C 1.50698 * 109.46956 * 179.97438 * 20 18 17 22 22 C 1.39879 * 125.89932 * 125.01370 * 21 20 18 23 23 C 1.35312 * 107.91958 * 179.97438 * 22 21 20 24 24 N 1.34947 * 107.74709 * 0.02562 * 23 22 21 25 25 H 0.97007 * 126.03345 * 180.02562 * 24 23 22 26 26 N 1.30838 * 125.90367 * 304.97574 * 21 20 18 27 27 C 1.47419 * 108.69982 * 358.58563 * 17 16 15 28 28 C 1.46892 * 111.27125 * 63.10167 * 12 11 10 29 29 C 1.47073 * 120.88292 * 26.56809 * 9 7 2 30 30 H 0.97002 * 119.99873 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.62510 * 111.45691 * 10 9 7 32 32 H 1.08997 * 109.79081 * 350.96960 * 10 9 7 33 33 H 1.09006 * 109.49575 * 186.21313 * 11 10 9 34 34 H 1.09000 * 109.49402 * 66.13563 * 11 10 9 35 35 H 1.09005 * 110.72261 * 271.96035 * 15 13 12 36 36 H 1.09008 * 110.72050 * 35.04645 * 15 13 12 37 37 H 1.08998 * 109.99505 * 218.66691 * 16 15 13 38 38 H 1.09000 * 109.78416 * 97.49689 * 16 15 13 39 39 H 1.08997 * 109.46830 * 59.99983 * 20 18 17 40 40 H 1.09002 * 109.47018 * 299.99658 * 20 18 17 41 41 H 1.08000 * 126.03574 * 359.95173 * 22 21 20 42 42 H 1.07998 * 126.12354 * 180.02562 * 23 22 21 43 43 H 1.09000 * 110.36414 * 143.19223 * 27 17 16 44 44 H 1.08997 * 110.36794 * 265.51780 * 27 17 16 45 45 H 1.08999 * 109.49454 * 56.85911 * 28 12 11 46 46 H 1.09008 * 109.49562 * 176.93639 * 28 12 11 47 47 H 1.09011 * 109.62899 * 248.54231 * 29 9 7 48 48 H 1.09000 * 109.63507 * 9.12146 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0548 -1.2225 0.2743 9 7 1.3705 -2.3623 -0.3460 10 6 1.8309 -3.6609 0.1686 11 6 2.0023 -4.6201 -1.0140 12 7 0.7547 -4.6656 -1.7882 13 6 0.8182 -5.7008 -2.8286 14 1 1.6773 -5.5440 -3.4810 15 6 0.8476 -7.1197 -2.2016 16 6 0.2340 -8.0021 -3.3090 17 7 -0.5608 -7.1220 -4.1780 18 6 -1.2397 -7.5077 -5.2766 19 8 -1.8691 -6.6928 -5.9177 20 6 -1.2169 -8.9513 -5.7083 21 6 -2.0487 -9.1162 -6.9541 22 6 -1.6154 -9.6734 -8.1618 23 6 -2.6526 -9.6425 -9.0303 24 7 -3.7046 -9.0850 -8.3951 25 1 -4.5851 -8.9344 -8.7732 26 7 -3.3010 -8.7636 -7.0928 27 6 -0.4974 -5.7490 -3.6451 28 6 0.4400 -3.3538 -2.3694 29 6 0.2047 -2.3426 -1.2423 30 1 -0.4850 0.8401 0.0004 31 1 1.0920 -4.0628 0.8619 32 1 2.7849 -3.5375 0.6812 33 1 2.2363 -5.6178 -0.6424 34 1 2.8136 -4.2697 -1.6520 35 1 1.8716 -7.4246 -1.9853 36 1 0.2375 -7.1552 -1.2990 37 1 -0.4079 -8.7636 -2.8660 38 1 1.0284 -8.4745 -3.8869 39 1 -1.6262 -9.5748 -4.9134 40 1 -0.1898 -9.2528 -5.9142 41 1 -0.6276 -10.0597 -8.3651 42 1 -2.6405 -9.9999 -10.0494 43 1 -0.4643 -5.0267 -4.4608 44 1 -1.3526 -5.5532 -2.9983 45 1 1.2731 -3.0209 -2.9885 46 1 -0.4590 -3.4329 -2.9807 47 1 -0.6907 -2.6178 -0.6847 48 1 0.0841 -1.3450 -1.6647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052002713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:46 Heat of formation + Delta-G solvation = 58.425384 kcal Electronic energy + Delta-G solvation = -28570.090679 eV Core-core repulsion = 24661.607784 eV Total energy + Delta-G solvation = -3908.482895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.09973 -41.09353 -39.75232 -38.06102 -35.80499 -33.99556 -33.31066 -32.07295 -31.36234 -30.81196 -30.14296 -29.12657 -27.49477 -25.10826 -24.49340 -23.61714 -22.44872 -21.64369 -21.14537 -20.79064 -19.78241 -18.97851 -18.81966 -18.13132 -17.57679 -16.81825 -16.55526 -16.12783 -15.71991 -15.48963 -15.40960 -15.31552 -15.11722 -14.88203 -14.59519 -14.51922 -14.35728 -14.10735 -13.74195 -13.56287 -13.49399 -13.16201 -13.10739 -12.93727 -12.65352 -12.55645 -12.47598 -12.24554 -12.02580 -11.85465 -11.74137 -11.55374 -11.41800 -11.35906 -10.96365 -10.58419 -10.35151 -9.65435 -9.59192 -9.30968 -8.68782 -7.87874 -5.32434 1.04330 1.45417 1.48394 1.55023 1.64584 1.69244 2.05616 2.16035 2.50390 2.98466 3.27580 3.37955 3.65082 3.67985 3.74717 3.89786 4.06181 4.12345 4.23470 4.33974 4.35584 4.39851 4.42768 4.53067 4.55659 4.61038 4.67882 4.70546 4.78449 4.85692 4.88894 4.89243 4.94287 5.00851 5.12134 5.14130 5.18745 5.27052 5.33708 5.38306 5.60828 5.66260 5.72366 6.13085 6.26847 6.36818 6.52950 6.54531 6.79970 7.12435 7.17399 7.84059 8.38058 9.18870 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.002144 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.409237 B =13059.460302 C =13845.859413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.055 4.055 3 Si 0.969 3.031 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.262 4.262 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.143 3.857 11 C 0.059 3.941 12 N -0.527 5.527 13 C 0.072 3.928 14 H 0.054 0.946 15 C -0.114 4.114 16 C 0.100 3.900 17 N -0.618 5.618 18 C 0.523 3.477 19 O -0.583 6.583 20 C -0.045 4.045 21 C 0.065 3.935 22 C -0.284 4.284 23 C 0.064 3.936 24 N -0.480 5.480 25 H 0.448 0.552 26 N -0.324 5.324 27 C 0.118 3.882 28 C 0.051 3.949 29 C 0.187 3.813 30 H 0.249 0.751 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.023 0.977 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.132 0.868 40 H 0.150 0.850 41 H 0.173 0.827 42 H 0.219 0.781 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.018 0.982 46 H 0.069 0.931 47 H -0.002 1.002 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.280 -27.428 -15.001 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.198 1.198 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.017 3.983 11 C -0.070 4.070 12 N -0.253 5.253 13 C -0.037 4.037 14 H 0.072 0.928 15 C -0.152 4.152 16 C -0.022 4.022 17 N -0.353 5.353 18 C 0.312 3.688 19 O -0.463 6.463 20 C -0.086 4.086 21 C -0.102 4.102 22 C -0.313 4.313 23 C -0.083 4.083 24 N -0.189 5.189 25 H 0.293 0.707 26 N -0.148 5.148 27 C -0.005 4.005 28 C -0.078 4.078 29 C 0.061 3.939 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.042 0.958 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.190 0.810 42 H 0.235 0.765 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.036 0.964 46 H 0.087 0.913 47 H 0.016 0.984 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.556 -26.514 -14.501 30.226 hybrid contribution 0.634 1.748 -0.989 2.106 sum 0.077 -24.766 -15.490 29.211 Atomic orbital electron populations 1.70192 1.06726 1.25876 1.55549 1.25835 0.96080 1.01647 1.01479 0.85315 0.77506 0.79114 0.78363 1.20566 1.22193 1.19792 1.19514 0.92952 0.85951 1.40806 0.91189 1.44400 1.34073 1.02430 1.52960 1.21166 0.97614 0.85302 0.94197 1.22481 0.88912 1.00476 0.95160 1.61941 1.34842 1.04566 1.23927 1.22755 0.95240 0.93577 0.92168 0.92819 1.22710 1.03467 0.90848 0.98167 1.22396 0.95514 0.93013 0.91262 1.48530 1.50300 1.09888 1.26547 1.20831 0.77543 0.91700 0.78697 1.90738 1.44053 1.56098 1.55383 1.20126 1.02501 0.91642 0.94336 1.22066 0.92282 0.98606 0.97280 1.21803 1.02769 1.13943 0.92812 1.23306 0.87197 0.97088 1.00704 1.46472 1.13984 1.48924 1.09535 0.70703 1.77332 1.15727 1.23210 0.98506 1.21993 0.98049 0.84226 0.96269 1.22550 0.98866 0.89803 0.96618 1.20567 0.88000 0.96112 0.89195 0.94161 0.96432 0.91825 0.87564 0.95844 0.87364 0.89816 0.88600 0.87864 0.85071 0.83188 0.80951 0.76452 0.93230 0.92256 0.96407 0.91274 0.98437 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.26 11.15 21.65 0.24 -57.02 16 2 C -0.06 -3.17 4.94 84.86 0.42 -2.75 16 3 Si 0.97 45.84 29.59 68.60 2.03 47.87 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.26 -14.69 9.63 84.03 0.81 -13.88 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 9 N -0.61 -31.77 3.04 -698.13 -2.12 -33.89 16 10 C 0.14 5.86 6.69 86.35 0.58 6.44 16 11 C 0.06 1.87 5.52 86.38 0.48 2.34 16 12 N -0.53 -17.51 4.53 -861.92 -3.90 -21.41 16 13 C 0.07 1.81 2.72 46.31 0.13 1.94 16 14 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 15 C -0.11 -1.83 5.62 31.78 0.18 -1.65 16 16 C 0.10 1.25 6.49 86.73 0.56 1.81 16 17 N -0.62 -13.97 3.33 -811.79 -2.70 -16.67 16 18 C 0.52 13.57 7.84 87.66 0.69 14.25 16 19 O -0.58 -21.88 15.82 -3.06 -0.05 -21.93 16 20 C -0.05 -0.72 5.47 29.10 0.16 -0.56 16 21 C 0.06 1.39 6.01 43.10 0.26 1.65 16 22 C -0.28 -4.32 10.72 21.99 0.24 -4.08 16 23 C 0.06 0.79 11.99 83.54 1.00 1.79 16 24 N -0.48 -8.39 7.36 -57.59 -0.42 -8.81 16 25 H 0.45 5.11 8.96 -213.33 -1.91 3.20 16 26 N -0.32 -8.55 12.05 -47.38 -0.57 -9.12 16 27 C 0.12 3.39 5.03 86.86 0.44 3.83 16 28 C 0.05 2.07 5.42 86.38 0.47 2.54 16 29 C 0.19 9.58 5.42 86.35 0.47 10.04 16 30 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 2.47 7.96 -2.39 -0.02 2.45 16 33 H 0.11 2.52 7.11 -2.38 -0.02 2.51 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 1.20 7.97 -2.38 -0.02 1.18 16 36 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 39 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.15 1.15 8.12 -2.39 -0.02 1.13 16 41 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 42 H 0.22 0.49 8.06 -2.91 -0.02 0.47 16 43 H 0.05 1.65 7.77 -2.39 -0.02 1.63 16 44 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 2.68 6.60 -2.38 -0.02 2.66 16 47 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 48 H 0.05 3.08 6.12 -2.39 -0.01 3.07 16 Total: -1.00 -85.55 382.01 -1.58 -87.12 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -0.95 Total: 10.15 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 6.87 Total: 23.71 kcal Atomic # 7 Polarization: -137.44 SS G_CDS: -9.48 Total: -146.92 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -85.55 -1.58 -87.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052002713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.549 kcal (2) G-P(sol) polarization free energy of solvation -85.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds