Wall clock time and date at job start Tue Mar 31 2020 18:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00367 * 2 1 4 4 H 1.48497 * 109.46972 * 240.00294 * 3 2 1 5 5 H 1.48496 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47092 * 120.00135 * 3 2 1 7 7 C 1.38820 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99973 * 197.01677 * 7 2 1 9 9 N 1.36937 * 119.99941 * 17.01363 * 7 2 1 10 10 C 1.47075 * 120.87795 * 206.58803 * 9 7 2 11 11 C 1.53243 * 108.51827 * 231.16573 * 10 9 7 12 12 N 1.46901 * 109.33678 * 306.16711 * 11 10 9 13 13 C 1.46902 * 110.99606 * 187.25722 * 12 11 10 14 14 H 1.09008 * 110.88887 * 303.87961 * 13 12 11 15 15 C 1.55150 * 111.04195 * 67.78884 * 13 12 11 16 16 C 1.54337 * 103.02282 * 153.39373 * 15 13 12 17 17 N 1.47014 * 107.26435 * 338.14205 * 16 15 13 18 18 C 1.34782 * 125.64850 * 178.85563 * 17 16 15 19 19 O 1.21280 * 119.99926 * 179.69102 * 18 17 16 20 20 C 1.50701 * 119.99574 * 359.40660 * 18 17 16 21 21 C 1.50700 * 109.47011 * 180.28130 * 20 18 17 22 22 C 1.34663 * 126.59152 * 85.02292 * 21 20 18 23 23 N 1.34137 * 108.02013 * 179.97438 * 22 21 20 24 24 C 1.30491 * 109.25338 * 0.02562 * 23 22 21 25 25 N 1.35043 * 108.70490 * 359.76398 * 24 23 22 26 26 H 0.97003 * 126.40158 * 180.26467 * 25 24 23 27 27 C 1.47429 * 108.70485 * 358.58229 * 17 16 15 28 28 C 1.46896 * 111.26669 * 63.10989 * 12 11 10 29 29 C 1.47079 * 120.88176 * 26.56796 * 9 7 2 30 30 H 0.97006 * 119.99666 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.62924 * 111.45350 * 10 9 7 32 32 H 1.09000 * 109.79177 * 350.96840 * 10 9 7 33 33 H 1.09004 * 109.49008 * 186.21152 * 11 10 9 34 34 H 1.09000 * 109.49502 * 66.13469 * 11 10 9 35 35 H 1.09001 * 110.72073 * 271.95554 * 15 13 12 36 36 H 1.09004 * 110.71878 * 35.04659 * 15 13 12 37 37 H 1.09002 * 109.98837 * 218.66603 * 16 15 13 38 38 H 1.08997 * 109.77727 * 97.50030 * 16 15 13 39 39 H 1.08996 * 109.47559 * 300.28148 * 20 18 17 40 40 H 1.09003 * 109.47020 * 60.28490 * 20 18 17 41 41 H 1.07997 * 125.99409 * 359.97219 * 22 21 20 42 42 H 1.08005 * 125.64819 * 179.97438 * 24 23 22 43 43 H 1.08998 * 110.36551 * 143.19554 * 27 17 16 44 44 H 1.09002 * 110.36827 * 265.51924 * 27 17 16 45 45 H 1.09001 * 109.49438 * 56.85328 * 28 12 11 46 46 H 1.09005 * 109.48876 * 176.93188 * 28 12 11 47 47 H 1.09001 * 109.62539 * 248.54357 * 29 9 7 48 48 H 1.09004 * 109.62987 * 9.12253 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0547 -1.2229 0.2732 9 7 1.3704 -2.3620 -0.3481 10 6 1.8307 -3.6611 0.1655 11 6 2.0021 -4.6193 -1.0181 12 7 0.7544 -4.6641 -1.7922 13 6 0.8179 -5.6984 -2.8335 14 1 1.6770 -5.5411 -3.4857 15 6 0.8473 -7.1178 -2.2077 16 6 0.2336 -7.9993 -3.3159 17 7 -0.5612 -7.1184 -4.1841 18 6 -1.2402 -7.5031 -5.2830 19 8 -1.8695 -6.6877 -5.9233 20 6 -1.2123 -8.9452 -5.7195 21 6 -2.0391 -9.1079 -6.9689 22 6 -1.6290 -8.9038 -8.2352 23 7 -2.6626 -9.1566 -9.0520 24 6 -3.6976 -9.5090 -8.3398 25 7 -3.3501 -9.4963 -7.0349 26 1 -3.9228 -9.7195 -6.2844 27 6 -0.4977 -5.7457 -3.6500 28 6 0.4398 -3.3517 -2.3723 29 6 0.2044 -2.3416 -1.2444 30 1 -0.4850 0.8401 0.0004 31 1 1.0918 -4.0635 0.8584 32 1 2.7847 -3.5382 0.6782 33 1 2.2360 -5.6172 -0.6472 34 1 2.8135 -4.2683 -1.6557 35 1 1.8712 -7.4229 -1.9917 36 1 0.2372 -7.1541 -1.3051 37 1 -0.4083 -8.7611 -2.8734 38 1 1.0280 -8.4712 -3.8941 39 1 -0.1839 -9.2434 -5.9231 40 1 -1.6226 -9.5724 -4.9280 41 1 -0.6411 -8.5914 -8.5398 42 1 -4.6702 -9.7710 -8.7296 43 1 -0.4646 -5.0227 -4.4650 44 1 -1.3530 -5.5505 -3.0030 45 1 1.2729 -3.0184 -2.9911 46 1 -0.4593 -3.4304 -2.9836 47 1 -0.6908 -2.6172 -0.6869 48 1 0.0840 -1.3435 -1.6658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052091064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:31 Heat of formation + Delta-G solvation = 67.959689 kcal Electronic energy + Delta-G solvation = -28626.585738 eV Core-core repulsion = 24718.516282 eV Total energy + Delta-G solvation = -3908.069457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.30717 -40.24810 -38.52937 -36.83755 -34.22806 -33.12938 -32.25583 -31.52034 -30.78794 -29.75956 -28.81931 -27.28561 -25.79618 -23.80033 -22.90882 -22.27153 -21.82550 -21.22481 -20.45414 -19.56251 -19.17261 -18.05326 -17.45904 -17.11617 -16.35515 -15.71857 -15.26721 -14.95690 -14.75116 -14.45866 -14.35976 -14.07550 -13.98261 -13.77418 -13.52812 -13.46899 -13.32786 -13.09635 -12.96193 -12.77160 -12.43532 -12.29908 -11.83088 -11.47069 -11.24303 -11.06757 -10.94283 -10.73382 -10.48594 -10.33720 -10.29525 -10.25305 -10.06448 -10.06407 -9.75309 -9.62428 -8.83564 -8.64048 -8.52015 -7.94264 -6.69116 -5.79532 -3.20854 1.69586 2.40013 2.66340 2.88869 3.01840 3.37652 3.43907 3.44683 4.16176 4.18588 4.28764 4.48727 4.49862 4.54072 4.58332 4.69438 4.86898 4.97538 5.15055 5.17399 5.23770 5.34190 5.36071 5.38180 5.42244 5.66911 5.76232 5.80051 5.86550 5.87396 5.91154 5.98142 6.08765 6.12712 6.22668 6.30000 6.46979 6.48756 6.65242 6.88147 7.07682 7.19767 7.29618 7.51618 7.59754 7.66392 7.79173 7.80813 7.94999 8.41903 9.19594 9.83002 10.41074 11.29273 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023994 B = 0.002149 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.657222 B =13027.584256 C =13769.514945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.521 5.521 13 C 0.069 3.931 14 H 0.051 0.949 15 C -0.123 4.123 16 C 0.101 3.899 17 N -0.618 5.618 18 C 0.525 3.475 19 O -0.527 6.527 20 C -0.059 4.059 21 C -0.008 4.008 22 C -0.006 4.006 23 N -0.494 5.494 24 C 0.187 3.813 25 N -0.563 5.563 26 H 0.418 0.582 27 C 0.115 3.885 28 C 0.032 3.968 29 C 0.179 3.821 30 H 0.255 0.745 31 H 0.025 0.975 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.167 0.833 42 H 0.208 0.792 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.026 0.974 46 H 0.063 0.937 47 H 0.027 0.973 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -23.623 -8.921 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.084 4.084 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.069 0.931 15 C -0.161 4.161 16 C -0.022 4.022 17 N -0.353 5.353 18 C 0.313 3.687 19 O -0.403 6.403 20 C -0.100 4.100 21 C -0.124 4.124 22 C -0.154 4.154 23 N -0.213 5.213 24 C -0.097 4.097 25 N -0.166 5.166 26 H 0.256 0.744 27 C -0.007 4.007 28 C -0.097 4.097 29 C 0.053 3.947 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.118 0.882 41 H 0.184 0.816 42 H 0.224 0.776 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.045 0.955 46 H 0.081 0.919 47 H 0.045 0.955 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.444 -23.081 -9.900 25.350 hybrid contribution 0.766 0.906 0.762 1.410 sum -2.678 -22.175 -9.138 24.133 Atomic orbital electron populations 1.70014 1.05206 1.25642 1.53871 1.25030 0.95315 0.98380 1.00981 0.86364 0.78902 0.83385 0.78082 1.21097 1.21603 1.20901 1.19138 0.92544 0.84809 1.41818 0.91698 1.44109 1.34139 1.01245 1.52349 1.20959 0.97802 0.86493 0.92497 1.22633 0.89353 0.99486 0.96925 1.62042 1.34505 1.05514 1.22550 1.22743 0.95862 0.92669 0.92841 0.93114 1.22684 1.01711 0.93663 0.98046 1.22102 0.94624 0.93563 0.91940 1.48464 1.50003 1.10564 1.26319 1.20139 0.78954 0.90402 0.79246 1.90774 1.42039 1.54121 1.53357 1.19990 1.01307 0.94496 0.94218 1.20440 0.85607 1.09489 0.96885 1.22031 0.99360 1.05737 0.88314 1.70282 0.99467 1.17629 1.33954 1.24945 1.00552 1.04840 0.79342 1.43194 1.10900 1.52524 1.10013 0.74446 1.22264 0.98320 0.82734 0.97378 1.22968 0.98828 0.89091 0.98820 1.20863 0.88953 0.96592 0.88333 0.93526 0.95698 0.92604 0.91883 0.95355 0.90138 0.89200 0.91208 0.91291 0.86501 0.88227 0.81560 0.77558 0.90483 0.90123 0.95520 0.91888 0.95520 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 11.15 55.49 0.62 -25.53 16 2 C 0.00 0.04 4.94 -17.43 -0.09 -0.04 16 3 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.91 9.63 -15.06 -0.15 -7.05 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.60 -14.80 3.04 -172.02 -0.52 -15.32 16 10 C 0.15 3.04 6.69 -3.60 -0.02 3.02 16 11 C 0.05 0.75 5.52 -3.70 -0.02 0.73 16 12 N -0.52 -8.52 4.53 -223.78 -1.01 -9.53 16 13 C 0.07 0.88 2.72 -65.57 -0.18 0.70 16 14 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 15 C -0.12 -1.14 5.62 -24.89 -0.14 -1.28 16 16 C 0.10 0.75 6.49 -3.06 -0.02 0.73 16 17 N -0.62 -6.65 3.33 -170.51 -0.57 -7.21 16 18 C 0.53 6.06 7.84 -10.98 -0.09 5.98 16 19 O -0.53 -8.61 16.29 5.56 0.09 -8.52 16 20 C -0.06 -0.43 5.45 -29.03 -0.16 -0.58 16 21 C -0.01 -0.08 5.73 -81.60 -0.47 -0.55 16 22 C -0.01 -0.07 11.79 -17.81 -0.21 -0.28 16 23 N -0.49 -6.05 11.25 -14.67 -0.17 -6.21 16 24 C 0.19 1.63 13.04 -90.38 -1.18 0.45 16 25 N -0.56 -4.33 6.15 -10.30 -0.06 -4.39 16 26 H 0.42 1.87 8.96 -40.82 -0.37 1.50 16 27 C 0.12 1.52 5.03 -2.53 -0.01 1.51 16 28 C 0.03 0.61 5.42 -3.71 -0.02 0.59 16 29 C 0.18 4.25 5.42 -3.61 -0.02 4.23 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.09 7.96 -51.93 -0.41 0.68 16 33 H 0.06 0.85 7.11 -51.93 -0.37 0.48 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.64 7.97 -51.93 -0.41 0.22 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.21 0.94 8.06 -52.48 -0.42 0.51 16 43 H 0.08 1.14 7.77 -51.93 -0.40 0.74 16 44 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.11 6.60 -51.93 -0.34 0.77 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 2.37 6.12 -51.93 -0.32 2.05 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -35.66 382.32 -11.33 -46.99 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.67 Total: -0.78 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -2.77 Total: 8.14 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -1.71 Total: -68.20 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.66 -11.33 -46.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052091064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.951 kcal (2) G-P(sol) polarization free energy of solvation -35.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds