Wall clock time and date at job start Tue Mar 31 2020 18:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00367 * 2 1 4 4 H 1.48497 * 109.46972 * 240.00294 * 3 2 1 5 5 H 1.48496 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47092 * 120.00135 * 3 2 1 7 7 C 1.38820 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99973 * 197.01677 * 7 2 1 9 9 N 1.36937 * 119.99941 * 17.01363 * 7 2 1 10 10 C 1.47075 * 120.87795 * 206.58803 * 9 7 2 11 11 C 1.53243 * 108.51827 * 231.16573 * 10 9 7 12 12 N 1.46901 * 109.33678 * 306.16711 * 11 10 9 13 13 C 1.46902 * 110.99606 * 187.25722 * 12 11 10 14 14 H 1.09008 * 110.88887 * 303.87961 * 13 12 11 15 15 C 1.55150 * 111.04195 * 67.78884 * 13 12 11 16 16 C 1.54337 * 103.02282 * 153.39373 * 15 13 12 17 17 N 1.47014 * 107.26435 * 338.14205 * 16 15 13 18 18 C 1.34782 * 125.64850 * 178.85563 * 17 16 15 19 19 O 1.21280 * 119.99926 * 179.69102 * 18 17 16 20 20 C 1.50701 * 119.99574 * 359.40660 * 18 17 16 21 21 C 1.50700 * 109.47011 * 180.28130 * 20 18 17 22 22 C 1.34663 * 126.59152 * 85.02292 * 21 20 18 23 23 N 1.34137 * 108.02013 * 179.97438 * 22 21 20 24 24 C 1.30491 * 109.25338 * 0.02562 * 23 22 21 25 25 N 1.35043 * 108.70490 * 359.76398 * 24 23 22 26 26 H 0.97003 * 126.40158 * 180.26467 * 25 24 23 27 27 C 1.47429 * 108.70485 * 358.58229 * 17 16 15 28 28 C 1.46896 * 111.26669 * 63.10989 * 12 11 10 29 29 C 1.47079 * 120.88176 * 26.56796 * 9 7 2 30 30 H 0.97006 * 119.99666 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.62924 * 111.45350 * 10 9 7 32 32 H 1.09000 * 109.79177 * 350.96840 * 10 9 7 33 33 H 1.09004 * 109.49008 * 186.21152 * 11 10 9 34 34 H 1.09000 * 109.49502 * 66.13469 * 11 10 9 35 35 H 1.09001 * 110.72073 * 271.95554 * 15 13 12 36 36 H 1.09004 * 110.71878 * 35.04659 * 15 13 12 37 37 H 1.09002 * 109.98837 * 218.66603 * 16 15 13 38 38 H 1.08997 * 109.77727 * 97.50030 * 16 15 13 39 39 H 1.08996 * 109.47559 * 300.28148 * 20 18 17 40 40 H 1.09003 * 109.47020 * 60.28490 * 20 18 17 41 41 H 1.07997 * 125.99409 * 359.97219 * 22 21 20 42 42 H 1.08005 * 125.64819 * 179.97438 * 24 23 22 43 43 H 1.08998 * 110.36551 * 143.19554 * 27 17 16 44 44 H 1.09002 * 110.36827 * 265.51924 * 27 17 16 45 45 H 1.09001 * 109.49438 * 56.85328 * 28 12 11 46 46 H 1.09005 * 109.48876 * 176.93188 * 28 12 11 47 47 H 1.09001 * 109.62539 * 248.54357 * 29 9 7 48 48 H 1.09004 * 109.62987 * 9.12253 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0547 -1.2229 0.2732 9 7 1.3704 -2.3620 -0.3481 10 6 1.8307 -3.6611 0.1655 11 6 2.0021 -4.6193 -1.0181 12 7 0.7544 -4.6641 -1.7922 13 6 0.8179 -5.6984 -2.8335 14 1 1.6770 -5.5411 -3.4857 15 6 0.8473 -7.1178 -2.2077 16 6 0.2336 -7.9993 -3.3159 17 7 -0.5612 -7.1184 -4.1841 18 6 -1.2402 -7.5031 -5.2830 19 8 -1.8695 -6.6877 -5.9233 20 6 -1.2123 -8.9452 -5.7195 21 6 -2.0391 -9.1079 -6.9689 22 6 -1.6290 -8.9038 -8.2352 23 7 -2.6626 -9.1566 -9.0520 24 6 -3.6976 -9.5090 -8.3398 25 7 -3.3501 -9.4963 -7.0349 26 1 -3.9228 -9.7195 -6.2844 27 6 -0.4977 -5.7457 -3.6500 28 6 0.4398 -3.3517 -2.3723 29 6 0.2044 -2.3416 -1.2444 30 1 -0.4850 0.8401 0.0004 31 1 1.0918 -4.0635 0.8584 32 1 2.7847 -3.5382 0.6782 33 1 2.2360 -5.6172 -0.6472 34 1 2.8135 -4.2683 -1.6557 35 1 1.8712 -7.4229 -1.9917 36 1 0.2372 -7.1541 -1.3051 37 1 -0.4083 -8.7611 -2.8734 38 1 1.0280 -8.4712 -3.8941 39 1 -0.1839 -9.2434 -5.9231 40 1 -1.6226 -9.5724 -4.9280 41 1 -0.6411 -8.5914 -8.5398 42 1 -4.6702 -9.7710 -8.7296 43 1 -0.4646 -5.0227 -4.4650 44 1 -1.3530 -5.5505 -3.0030 45 1 1.2729 -3.0184 -2.9911 46 1 -0.4593 -3.4304 -2.9836 47 1 -0.6908 -2.6172 -0.6869 48 1 0.0840 -1.3435 -1.6658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052091064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:30 Heat of formation + Delta-G solvation = 42.461074 kcal Electronic energy + Delta-G solvation = -28627.691441 eV Core-core repulsion = 24718.516282 eV Total energy + Delta-G solvation = -3909.175160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.97735 -41.17804 -39.79341 -38.09481 -35.82415 -33.89756 -33.38629 -32.78413 -32.04739 -31.22146 -29.85155 -28.34089 -27.23319 -25.06909 -24.50756 -23.56092 -22.52359 -21.96227 -21.56086 -20.81820 -20.35583 -18.83463 -18.70459 -18.27356 -17.58634 -16.81572 -16.55110 -16.14196 -15.89809 -15.56527 -15.42785 -15.32229 -15.20381 -15.07280 -14.89388 -14.55086 -14.46896 -14.08369 -13.95798 -13.72446 -13.59830 -13.17837 -13.11809 -13.04220 -12.66543 -12.56908 -12.49378 -12.25538 -12.03503 -11.87023 -11.75542 -11.43558 -11.37105 -11.11745 -10.98278 -10.89581 -10.59051 -9.69657 -9.34278 -9.32816 -8.69548 -7.88804 -5.33129 1.01113 1.45137 1.47896 1.54514 1.57337 1.89895 2.24622 2.32973 2.49727 2.96852 3.26854 3.36479 3.63643 3.66944 3.72226 3.89360 4.03365 4.05764 4.13065 4.22422 4.32949 4.36968 4.40965 4.51714 4.54259 4.58479 4.60080 4.66516 4.67762 4.70045 4.82814 4.87385 4.92024 4.99169 5.12195 5.15666 5.23393 5.25010 5.31510 5.37494 5.60190 5.65832 5.76697 6.11327 6.25126 6.36105 6.48780 6.58266 7.10456 7.11933 7.13303 7.83490 8.37082 9.17872 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023994 B = 0.002149 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.657222 B =13027.584256 C =13769.514945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.054 4.054 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.263 4.263 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.143 3.857 11 C 0.058 3.942 12 N -0.526 5.526 13 C 0.070 3.930 14 H 0.052 0.948 15 C -0.115 4.115 16 C 0.100 3.900 17 N -0.616 5.616 18 C 0.521 3.479 19 O -0.587 6.587 20 C -0.046 4.046 21 C -0.009 4.009 22 C -0.042 4.042 23 N -0.542 5.542 24 C 0.189 3.811 25 N -0.555 5.555 26 H 0.434 0.566 27 C 0.118 3.882 28 C 0.051 3.949 29 C 0.187 3.813 30 H 0.250 0.750 31 H 0.019 0.981 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.022 0.978 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.166 0.834 42 H 0.243 0.757 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.016 0.984 46 H 0.071 0.929 47 H -0.001 1.001 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.359 -27.044 -8.417 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.198 1.198 7 C -0.393 4.393 8 H 0.087 0.913 9 N -0.339 5.339 10 C 0.017 3.983 11 C -0.071 4.071 12 N -0.251 5.251 13 C -0.039 4.039 14 H 0.070 0.930 15 C -0.153 4.153 16 C -0.022 4.022 17 N -0.350 5.350 18 C 0.311 3.689 19 O -0.467 6.467 20 C -0.087 4.087 21 C -0.126 4.126 22 C -0.189 4.189 23 N -0.262 5.262 24 C -0.095 4.095 25 N -0.159 5.159 26 H 0.275 0.725 27 C -0.006 4.006 28 C -0.079 4.079 29 C 0.061 3.939 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.040 0.960 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.183 0.817 42 H 0.259 0.741 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.089 0.911 47 H 0.017 0.983 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.142 -26.574 -9.353 28.254 hybrid contribution 0.339 1.928 0.635 2.058 sum -1.804 -24.647 -8.718 26.205 Atomic orbital electron populations 1.70183 1.06683 1.25882 1.55512 1.25814 0.96075 1.01581 1.01457 0.85333 0.77538 0.79198 0.78342 1.20612 1.22156 1.19835 1.19505 0.92931 0.85999 1.40830 0.91272 1.44398 1.34107 1.02393 1.52993 1.21161 0.97607 0.85300 0.94198 1.22481 0.88950 1.00463 0.95168 1.61961 1.34730 1.04584 1.23847 1.22772 0.95351 0.93629 0.92192 0.93050 1.22712 1.03447 0.90837 0.98283 1.22402 0.95577 0.92991 0.91200 1.48538 1.50036 1.09883 1.26510 1.20938 0.77712 0.91733 0.78516 1.90755 1.44649 1.56091 1.55218 1.20083 1.02918 0.91562 0.94105 1.20723 0.86325 1.08482 0.97068 1.22260 0.99762 1.07362 0.89546 1.70221 1.00788 1.19576 1.35622 1.25645 1.01053 1.03247 0.79592 1.43209 1.10597 1.51713 1.10377 0.72544 1.22013 0.98062 0.84215 0.96312 1.22556 0.98895 0.89795 0.96621 1.20572 0.88000 0.96139 0.89182 0.94141 0.96341 0.91931 0.87574 0.95967 0.87630 0.89635 0.88124 0.88136 0.83563 0.84468 0.81688 0.74115 0.93194 0.91850 0.96530 0.91093 0.98307 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.45 11.15 21.65 0.24 -56.21 16 2 C -0.05 -3.06 4.94 84.86 0.42 -2.64 16 3 Si 0.97 45.39 29.59 68.60 2.03 47.42 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.26 -14.54 9.63 84.04 0.81 -13.73 16 8 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 9 N -0.61 -31.23 3.04 -698.14 -2.12 -33.35 16 10 C 0.14 5.73 6.69 86.35 0.58 6.31 16 11 C 0.06 1.80 5.52 86.38 0.48 2.27 16 12 N -0.53 -16.63 4.53 -861.89 -3.90 -20.54 16 13 C 0.07 1.63 2.72 46.31 0.13 1.76 16 14 H 0.05 1.24 8.14 -2.38 -0.02 1.23 16 15 C -0.11 -1.60 5.62 31.78 0.18 -1.42 16 16 C 0.10 0.96 6.49 86.74 0.56 1.52 16 17 N -0.62 -11.65 3.33 -811.76 -2.70 -14.35 16 18 C 0.52 11.03 7.84 87.66 0.69 11.72 16 19 O -0.59 -19.33 16.29 -3.03 -0.05 -19.38 16 20 C -0.05 -0.50 5.45 29.10 0.16 -0.34 16 21 C -0.01 -0.16 5.73 40.95 0.23 0.08 16 22 C -0.04 -0.95 11.79 83.52 0.98 0.04 16 23 N -0.54 -13.21 11.25 -200.31 -2.25 -15.47 16 24 C 0.19 3.03 13.04 180.26 2.35 5.38 16 25 N -0.55 -7.38 6.15 -186.50 -1.15 -8.53 16 26 H 0.43 2.68 8.96 -92.71 -0.83 1.85 16 27 C 0.12 3.04 5.03 86.86 0.44 3.47 16 28 C 0.05 1.98 5.42 86.38 0.47 2.45 16 29 C 0.19 9.34 5.42 86.35 0.47 9.81 16 30 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 2.38 7.96 -2.39 -0.02 2.37 16 33 H 0.11 2.41 7.11 -2.38 -0.02 2.39 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.11 1.02 7.97 -2.39 -0.02 1.00 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.24 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.05 1.54 7.77 -2.39 -0.02 1.52 16 44 H 0.06 1.84 8.12 -2.39 -0.02 1.82 16 45 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.07 2.62 6.60 -2.38 -0.02 2.61 16 47 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 48 H 0.05 3.01 6.12 -2.39 -0.01 2.99 16 Total: -1.00 -84.02 382.32 -0.83 -84.86 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.13 Total: 8.87 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 8.94 Total: 26.67 kcal Atomic # 7 Polarization: -136.55 SS G_CDS: -11.88 Total: -148.43 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.38 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -84.02 -0.83 -84.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052091064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.316 kcal (2) G-P(sol) polarization free energy of solvation -84.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds