Wall clock time and date at job start Tue Mar 31 2020 18:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00154 * 2 1 4 4 H 1.48493 * 109.47124 * 270.00178 * 3 2 1 5 5 H 1.48503 * 109.47166 * 30.00412 * 3 2 1 6 6 H 1.48504 * 109.46721 * 150.00116 * 3 2 1 7 7 C 1.38809 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00257 * 194.66672 * 7 2 1 9 9 N 1.36940 * 120.00143 * 14.66700 * 7 2 1 10 10 C 1.47083 * 120.88480 * 208.78678 * 9 7 2 11 11 C 1.53237 * 108.52358 * 231.20839 * 10 9 7 12 12 N 1.46901 * 109.33678 * 306.16857 * 11 10 9 13 13 C 1.46898 * 111.00156 * 187.25561 * 12 11 10 14 14 H 1.09005 * 110.88624 * 295.84456 * 13 12 11 15 15 C 1.55153 * 111.04404 * 171.93349 * 13 12 11 16 16 C 1.54320 * 102.94691 * 206.40993 * 15 13 12 17 17 N 1.47020 * 107.26956 * 22.18978 * 16 15 13 18 18 C 1.34773 * 125.64727 * 181.09384 * 17 16 15 19 19 O 1.21286 * 120.00278 * 179.97438 * 18 17 16 20 20 C 1.50699 * 120.00102 * 359.96155 * 18 17 16 21 21 C 1.50701 * 109.47256 * 179.97438 * 20 18 17 22 22 C 1.34668 * 126.59112 * 85.02866 * 21 20 18 23 23 N 1.34129 * 108.02268 * 179.97438 * 22 21 20 24 24 C 1.30497 * 109.25092 * 359.97438 * 23 22 21 25 25 N 1.35039 * 108.70673 * 359.77410 * 24 23 22 26 26 H 0.96995 * 126.40408 * 180.27096 * 25 24 23 27 27 C 1.47423 * 108.70606 * 1.06194 * 17 16 15 28 28 C 1.46901 * 111.27336 * 63.10467 * 12 11 10 29 29 C 1.47080 * 120.88082 * 28.80501 * 9 7 2 30 30 H 0.96999 * 119.99396 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.62836 * 111.49410 * 10 9 7 32 32 H 1.09003 * 109.62212 * 350.91801 * 10 9 7 33 33 H 1.08998 * 109.49332 * 186.21303 * 11 10 9 34 34 H 1.08999 * 109.51563 * 66.13666 * 11 10 9 35 35 H 1.09006 * 110.71856 * 324.77493 * 15 13 12 36 36 H 1.08999 * 110.71798 * 87.86596 * 15 13 12 37 37 H 1.09003 * 109.88285 * 141.60932 * 16 15 13 38 38 H 1.08998 * 109.88133 * 262.62010 * 16 15 13 39 39 H 1.09000 * 109.47028 * 300.00147 * 20 18 17 40 40 H 1.09004 * 109.46931 * 60.00001 * 20 18 17 41 41 H 1.08003 * 125.98772 * 359.95636 * 22 21 20 42 42 H 1.08007 * 125.64254 * 179.97438 * 24 23 22 43 43 H 1.08996 * 110.36725 * 217.03276 * 27 17 16 44 44 H 1.09003 * 110.36928 * 94.70531 * 27 17 16 45 45 H 1.09003 * 109.48793 * 56.85420 * 28 12 11 46 46 H 1.08991 * 109.49418 * 176.93426 * 28 12 11 47 47 H 1.08997 * 109.63425 * 248.50384 * 29 9 7 48 48 H 1.08998 * 109.62904 * 9.09155 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0638 -1.2176 0.2363 9 7 1.3590 -2.3686 -0.3013 10 6 1.8091 -3.6512 0.2606 11 6 1.9692 -4.6555 -0.8856 12 7 0.7194 -4.7189 -1.6550 13 6 0.7713 -5.7928 -2.6559 14 1 1.5426 -5.5937 -3.3999 15 6 -0.6120 -5.9942 -3.3291 16 6 -0.5712 -7.4733 -3.7673 17 7 0.4312 -8.1489 -2.9305 18 6 0.7797 -9.4479 -3.0168 19 8 1.6234 -9.9003 -2.2721 20 6 0.1210 -10.3386 -4.0385 21 6 0.6847 -11.7318 -3.9284 22 6 0.2754 -12.6992 -3.0857 23 7 1.0309 -13.7859 -3.3029 24 6 1.8925 -13.5288 -4.2487 25 7 1.7069 -12.2594 -4.6703 26 1 2.2059 -11.8056 -5.3673 27 6 0.9925 -7.1699 -1.9819 28 6 0.4148 -3.4269 -2.2843 29 6 0.1911 -2.3722 -1.1953 30 1 -0.4849 0.8401 0.0004 31 1 1.0683 -4.0202 0.9701 32 1 2.7661 -3.5145 0.7642 33 1 2.1953 -5.6405 -0.4772 34 1 2.7821 -4.3368 -1.5380 35 1 -1.4172 -5.8259 -2.6138 36 1 -0.7206 -5.3365 -4.1916 37 1 -1.5489 -7.9315 -3.6174 38 1 -0.2874 -7.5411 -4.8175 39 1 -0.9536 -10.3657 -3.8579 40 1 0.3117 -9.9478 -5.0380 41 1 -0.5215 -12.6146 -2.3615 42 1 2.6297 -14.2184 -4.6330 43 1 2.0567 -7.3529 -1.8332 44 1 0.4622 -7.2162 -1.0307 45 1 1.2494 -3.1250 -2.9171 46 1 -0.4862 -3.5210 -2.8903 47 1 -0.7052 -2.6184 -0.6259 48 1 0.0784 -1.3901 -1.6545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052091068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:34 Heat of formation + Delta-G solvation = 66.878074 kcal Electronic energy + Delta-G solvation = -28574.508391 eV Core-core repulsion = 24666.392032 eV Total energy + Delta-G solvation = -3908.116359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.32423 -40.26261 -38.54007 -36.84348 -34.23258 -33.14460 -32.27049 -31.60947 -30.41589 -30.16559 -28.71775 -27.29492 -25.80966 -23.83457 -22.87411 -22.28721 -21.84048 -21.23176 -20.46603 -19.58024 -19.18670 -18.06520 -17.47835 -17.13032 -16.35320 -15.73379 -15.23830 -15.04492 -14.77636 -14.48676 -14.25817 -14.11596 -13.99264 -13.78374 -13.52266 -13.40525 -13.38960 -13.19128 -12.94694 -12.77645 -12.43627 -12.31973 -11.90087 -11.35412 -11.25460 -11.06410 -10.95341 -10.78672 -10.46265 -10.32738 -10.31808 -10.26842 -10.11057 -10.06061 -9.77884 -9.63037 -8.85181 -8.65589 -8.54116 -7.95148 -6.66722 -5.80877 -3.24723 1.67979 2.37900 2.64437 2.87111 3.00330 3.35275 3.42308 3.43600 4.15402 4.17809 4.27330 4.47240 4.50035 4.52157 4.57104 4.68942 4.87643 4.96237 5.13260 5.16829 5.23157 5.34316 5.34948 5.37345 5.42185 5.65832 5.76495 5.78799 5.83681 5.88982 5.90374 5.98648 6.10222 6.12561 6.20464 6.29046 6.45612 6.49343 6.65057 6.90475 7.05783 7.18578 7.27635 7.51115 7.58513 7.65099 7.78393 7.79179 7.92673 8.42196 9.19164 9.81361 10.40777 11.27932 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.037061 B = 0.002001 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.329105 B =13990.739016 C =14336.267114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.041 3.959 12 N -0.520 5.520 13 C 0.069 3.931 14 H 0.049 0.951 15 C -0.124 4.124 16 C 0.101 3.899 17 N -0.618 5.618 18 C 0.526 3.474 19 O -0.529 6.529 20 C -0.059 4.059 21 C -0.009 4.009 22 C -0.006 4.006 23 N -0.494 5.494 24 C 0.187 3.813 25 N -0.563 5.563 26 H 0.418 0.582 27 C 0.116 3.884 28 C 0.036 3.964 29 C 0.179 3.821 30 H 0.254 0.746 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.168 0.832 42 H 0.208 0.792 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.025 0.975 46 H 0.063 0.937 47 H 0.027 0.973 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -20.265 -14.332 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.088 4.088 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.067 0.933 15 C -0.162 4.162 16 C -0.022 4.022 17 N -0.353 5.353 18 C 0.313 3.687 19 O -0.405 6.405 20 C -0.100 4.100 21 C -0.124 4.124 22 C -0.154 4.154 23 N -0.213 5.213 24 C -0.097 4.097 25 N -0.167 5.167 26 H 0.255 0.745 27 C -0.006 4.006 28 C -0.093 4.093 29 C 0.053 3.947 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.185 0.815 42 H 0.224 0.776 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.043 0.957 46 H 0.081 0.919 47 H 0.045 0.955 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.763 -21.309 -13.120 25.086 hybrid contribution 1.410 2.134 -1.431 2.931 sum -0.353 -19.175 -14.550 24.073 Atomic orbital electron populations 1.70010 1.05182 1.25472 1.54155 1.25093 0.95375 0.98380 1.00789 0.86267 0.79092 0.83635 0.77627 1.21514 1.21693 1.20454 1.19189 0.91805 0.84422 1.42773 0.91741 1.44099 1.33844 1.02055 1.51860 1.20981 0.97943 0.86367 0.92487 1.22678 0.89415 0.99679 0.97022 1.62024 1.34503 1.04464 1.23578 1.22744 0.96345 0.91504 0.93525 0.93303 1.22692 0.98504 0.93666 1.01308 1.22102 0.91991 0.93574 0.94575 1.48456 1.41056 1.08625 1.37154 1.20135 0.82871 0.80713 0.84962 1.90767 1.32743 1.73307 1.43652 1.19993 1.01683 0.88750 0.99619 1.20445 0.95764 0.96258 0.99961 1.22041 1.02727 0.89350 1.01272 1.70284 1.07192 1.28367 1.15468 1.24943 1.02121 0.85483 0.97172 1.43192 1.28549 1.13408 1.31514 0.74483 1.22248 0.99425 0.86144 0.92801 1.22924 0.98696 0.89393 0.98252 1.20846 0.89103 0.95801 0.88914 0.93606 0.95546 0.92564 0.91847 0.95358 0.89001 0.90049 0.90934 0.91492 0.86407 0.88275 0.81506 0.77575 0.90740 0.90019 0.95704 0.91908 0.95451 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.83 11.17 55.49 0.62 -25.21 16 2 C 0.00 0.06 4.98 -17.43 -0.09 -0.03 16 3 Si 0.90 21.46 29.58 -169.99 -5.03 16.44 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.25 -6.86 9.62 -15.06 -0.14 -7.00 16 8 H 0.06 1.73 7.87 -52.49 -0.41 1.32 16 9 N -0.60 -14.78 3.03 -172.01 -0.52 -15.30 16 10 C 0.15 3.12 6.69 -3.60 -0.02 3.10 16 11 C 0.04 0.72 5.46 -3.70 -0.02 0.70 16 12 N -0.52 -8.49 4.53 -223.78 -1.01 -9.51 16 13 C 0.07 0.87 2.71 -65.56 -0.18 0.70 16 14 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 15 C -0.12 -1.20 5.43 -24.90 -0.14 -1.34 16 16 C 0.10 0.76 6.49 -3.07 -0.02 0.74 16 17 N -0.62 -6.49 3.33 -170.52 -0.57 -7.06 16 18 C 0.53 5.90 7.84 -10.99 -0.09 5.82 16 19 O -0.53 -8.37 16.29 5.55 0.09 -8.28 16 20 C -0.06 -0.42 5.45 -29.04 -0.16 -0.58 16 21 C -0.01 -0.08 5.73 -81.60 -0.47 -0.55 16 22 C -0.01 -0.06 11.79 -17.81 -0.21 -0.27 16 23 N -0.49 -5.92 11.25 -14.66 -0.16 -6.09 16 24 C 0.19 1.58 13.04 -90.38 -1.18 0.40 16 25 N -0.56 -4.20 6.15 -10.30 -0.06 -4.26 16 26 H 0.42 1.77 8.96 -40.82 -0.37 1.41 16 27 C 0.12 1.47 5.23 -2.53 -0.01 1.46 16 28 C 0.04 0.66 5.50 -3.70 -0.02 0.64 16 29 C 0.18 4.16 5.39 -3.60 -0.02 4.14 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.15 7.95 -51.93 -0.41 0.73 16 33 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.71 7.94 -51.93 -0.41 0.30 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.17 1.63 8.06 -52.48 -0.42 1.21 16 42 H 0.21 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.07 1.03 7.74 -51.93 -0.40 0.63 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.99 6.93 -51.93 -0.36 0.62 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 2.24 6.22 -51.93 -0.32 1.92 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -35.29 382.33 -11.32 -46.61 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.67 Total: -1.01 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -2.76 Total: 7.92 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -1.71 Total: -67.43 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.09 Total: -8.28 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.29 -11.32 -46.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052091068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.491 kcal (2) G-P(sol) polarization free energy of solvation -35.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds