Wall clock time and date at job start Tue Mar 31 2020 18:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00154 * 2 1 4 4 H 1.48493 * 109.47124 * 270.00178 * 3 2 1 5 5 H 1.48503 * 109.47166 * 30.00412 * 3 2 1 6 6 H 1.48504 * 109.46721 * 150.00116 * 3 2 1 7 7 C 1.38809 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00257 * 194.66672 * 7 2 1 9 9 N 1.36940 * 120.00143 * 14.66700 * 7 2 1 10 10 C 1.47083 * 120.88480 * 208.78678 * 9 7 2 11 11 C 1.53237 * 108.52358 * 231.20839 * 10 9 7 12 12 N 1.46901 * 109.33678 * 306.16857 * 11 10 9 13 13 C 1.46898 * 111.00156 * 187.25561 * 12 11 10 14 14 H 1.09005 * 110.88624 * 295.84456 * 13 12 11 15 15 C 1.55153 * 111.04404 * 171.93349 * 13 12 11 16 16 C 1.54320 * 102.94691 * 206.40993 * 15 13 12 17 17 N 1.47020 * 107.26956 * 22.18978 * 16 15 13 18 18 C 1.34773 * 125.64727 * 181.09384 * 17 16 15 19 19 O 1.21286 * 120.00278 * 179.97438 * 18 17 16 20 20 C 1.50699 * 120.00102 * 359.96155 * 18 17 16 21 21 C 1.50701 * 109.47256 * 179.97438 * 20 18 17 22 22 C 1.34668 * 126.59112 * 85.02866 * 21 20 18 23 23 N 1.34129 * 108.02268 * 179.97438 * 22 21 20 24 24 C 1.30497 * 109.25092 * 359.97438 * 23 22 21 25 25 N 1.35039 * 108.70673 * 359.77410 * 24 23 22 26 26 H 0.96995 * 126.40408 * 180.27096 * 25 24 23 27 27 C 1.47423 * 108.70606 * 1.06194 * 17 16 15 28 28 C 1.46901 * 111.27336 * 63.10467 * 12 11 10 29 29 C 1.47080 * 120.88082 * 28.80501 * 9 7 2 30 30 H 0.96999 * 119.99396 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.62836 * 111.49410 * 10 9 7 32 32 H 1.09003 * 109.62212 * 350.91801 * 10 9 7 33 33 H 1.08998 * 109.49332 * 186.21303 * 11 10 9 34 34 H 1.08999 * 109.51563 * 66.13666 * 11 10 9 35 35 H 1.09006 * 110.71856 * 324.77493 * 15 13 12 36 36 H 1.08999 * 110.71798 * 87.86596 * 15 13 12 37 37 H 1.09003 * 109.88285 * 141.60932 * 16 15 13 38 38 H 1.08998 * 109.88133 * 262.62010 * 16 15 13 39 39 H 1.09000 * 109.47028 * 300.00147 * 20 18 17 40 40 H 1.09004 * 109.46931 * 60.00001 * 20 18 17 41 41 H 1.08003 * 125.98772 * 359.95636 * 22 21 20 42 42 H 1.08007 * 125.64254 * 179.97438 * 24 23 22 43 43 H 1.08996 * 110.36725 * 217.03276 * 27 17 16 44 44 H 1.09003 * 110.36928 * 94.70531 * 27 17 16 45 45 H 1.09003 * 109.48793 * 56.85420 * 28 12 11 46 46 H 1.08991 * 109.49418 * 176.93426 * 28 12 11 47 47 H 1.08997 * 109.63425 * 248.50384 * 29 9 7 48 48 H 1.08998 * 109.62904 * 9.09155 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0638 -1.2176 0.2363 9 7 1.3590 -2.3686 -0.3013 10 6 1.8091 -3.6512 0.2606 11 6 1.9692 -4.6555 -0.8856 12 7 0.7194 -4.7189 -1.6550 13 6 0.7713 -5.7928 -2.6559 14 1 1.5426 -5.5937 -3.3999 15 6 -0.6120 -5.9942 -3.3291 16 6 -0.5712 -7.4733 -3.7673 17 7 0.4312 -8.1489 -2.9305 18 6 0.7797 -9.4479 -3.0168 19 8 1.6234 -9.9003 -2.2721 20 6 0.1210 -10.3386 -4.0385 21 6 0.6847 -11.7318 -3.9284 22 6 0.2754 -12.6992 -3.0857 23 7 1.0309 -13.7859 -3.3029 24 6 1.8925 -13.5288 -4.2487 25 7 1.7069 -12.2594 -4.6703 26 1 2.2059 -11.8056 -5.3673 27 6 0.9925 -7.1699 -1.9819 28 6 0.4148 -3.4269 -2.2843 29 6 0.1911 -2.3722 -1.1953 30 1 -0.4849 0.8401 0.0004 31 1 1.0683 -4.0202 0.9701 32 1 2.7661 -3.5145 0.7642 33 1 2.1953 -5.6405 -0.4772 34 1 2.7821 -4.3368 -1.5380 35 1 -1.4172 -5.8259 -2.6138 36 1 -0.7206 -5.3365 -4.1916 37 1 -1.5489 -7.9315 -3.6174 38 1 -0.2874 -7.5411 -4.8175 39 1 -0.9536 -10.3657 -3.8579 40 1 0.3117 -9.9478 -5.0380 41 1 -0.5215 -12.6146 -2.3615 42 1 2.6297 -14.2184 -4.6330 43 1 2.0567 -7.3529 -1.8332 44 1 0.4622 -7.2162 -1.0307 45 1 1.2494 -3.1250 -2.9171 46 1 -0.4862 -3.5210 -2.8903 47 1 -0.7052 -2.6184 -0.6259 48 1 0.0784 -1.3901 -1.6545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052091068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:33 Heat of formation + Delta-G solvation = 42.066166 kcal Electronic energy + Delta-G solvation = -28575.584316 eV Core-core repulsion = 24666.392032 eV Total energy + Delta-G solvation = -3909.192284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.97151 -41.17394 -39.78892 -38.08871 -35.81815 -33.88819 -33.40816 -32.79658 -31.82913 -31.45889 -29.77708 -28.34285 -27.23450 -25.09996 -24.46006 -23.57242 -22.51867 -21.94662 -21.57100 -20.82597 -20.35538 -18.82975 -18.69783 -18.25768 -17.57669 -16.85368 -16.55477 -16.12202 -15.83518 -15.58641 -15.46343 -15.26556 -15.19519 -15.07008 -14.93158 -14.54561 -14.46454 -14.07680 -13.94763 -13.72581 -13.60811 -13.32198 -13.04127 -12.97291 -12.69835 -12.54019 -12.52290 -12.16912 -12.02390 -11.88223 -11.79250 -11.44847 -11.37148 -11.10466 -10.97479 -10.88831 -10.59745 -9.69122 -9.33649 -9.32283 -8.66082 -7.88259 -5.35667 1.01937 1.46530 1.46866 1.56330 1.57973 1.90065 2.25210 2.33464 2.49743 2.96742 3.27417 3.36062 3.64281 3.67141 3.71900 3.89684 4.03910 4.05023 4.13615 4.21500 4.31670 4.35923 4.39623 4.52503 4.55883 4.58665 4.59729 4.67211 4.67768 4.68616 4.83095 4.87464 4.92620 5.02001 5.04597 5.18679 5.20577 5.25280 5.29513 5.36606 5.60928 5.70365 5.77405 6.12578 6.24761 6.38093 6.48738 6.58708 7.10654 7.13794 7.13993 7.82868 8.37730 9.18211 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.037061 B = 0.002001 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.329105 B =13990.739016 C =14336.267114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.063 0.937 9 N -0.614 5.614 10 C 0.145 3.855 11 C 0.055 3.945 12 N -0.528 5.528 13 C 0.070 3.930 14 H 0.052 0.948 15 C -0.120 4.120 16 C 0.102 3.898 17 N -0.616 5.616 18 C 0.523 3.477 19 O -0.585 6.585 20 C -0.048 4.048 21 C -0.009 4.009 22 C -0.041 4.041 23 N -0.542 5.542 24 C 0.189 3.811 25 N -0.555 5.555 26 H 0.434 0.566 27 C 0.121 3.879 28 C 0.055 3.945 29 C 0.185 3.815 30 H 0.251 0.749 31 H 0.016 0.984 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.023 0.977 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.166 0.834 42 H 0.243 0.757 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.018 0.982 46 H 0.092 0.908 47 H 0.000 1.000 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.692 -21.131 -17.195 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.339 5.339 10 C 0.019 3.981 11 C -0.074 4.074 12 N -0.253 5.253 13 C -0.039 4.039 14 H 0.070 0.930 15 C -0.158 4.158 16 C -0.020 4.020 17 N -0.350 5.350 18 C 0.313 3.687 19 O -0.465 6.465 20 C -0.088 4.088 21 C -0.126 4.126 22 C -0.189 4.189 23 N -0.262 5.262 24 C -0.095 4.095 25 N -0.159 5.159 26 H 0.274 0.726 27 C -0.003 4.003 28 C -0.074 4.074 29 C 0.060 3.940 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.041 0.959 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.163 0.837 40 H 0.154 0.846 41 H 0.183 0.817 42 H 0.259 0.741 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.037 0.963 46 H 0.111 0.889 47 H 0.019 0.981 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.802 -22.181 -16.026 27.424 hybrid contribution 1.434 2.348 -0.481 2.793 sum -0.368 -19.833 -16.508 25.807 Atomic orbital electron populations 1.70166 1.06520 1.25893 1.55351 1.25843 0.96178 1.01439 1.00998 0.85243 0.77959 0.79456 0.77614 1.20983 1.22026 1.19628 1.19487 0.92036 0.85674 1.42344 0.91893 1.44388 1.34065 1.02690 1.52725 1.21094 0.97383 0.85823 0.93789 1.22442 0.89849 0.99330 0.95819 1.61926 1.33861 1.04573 1.24927 1.22757 0.98715 0.89788 0.92614 0.93039 1.22719 0.95783 0.95867 1.01419 1.22340 0.92509 0.91576 0.95556 1.48520 1.41271 1.08324 1.36854 1.20867 0.82082 0.80852 0.84905 1.90750 1.35392 1.74309 1.46012 1.20083 1.02446 0.86413 0.99889 1.20709 0.95699 0.96807 0.99364 1.22264 1.03748 0.90313 1.02557 1.70224 1.08852 1.29602 1.17505 1.25645 1.01611 0.86267 0.96005 1.43201 1.28036 1.13159 1.31499 0.72564 1.22004 0.98393 0.86930 0.92976 1.22573 0.99814 0.88757 0.96209 1.20638 0.87749 0.96063 0.89586 0.93984 0.96638 0.92540 0.89800 0.95909 0.89943 0.88250 0.88287 0.88177 0.83712 0.84587 0.81682 0.74116 0.92444 0.91594 0.96327 0.88945 0.98140 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 11.17 21.65 0.24 -54.57 16 2 C -0.05 -2.73 4.98 84.86 0.42 -2.31 16 3 Si 0.97 44.68 29.58 68.60 2.03 46.71 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.27 -14.70 9.62 84.03 0.81 -13.89 16 8 H 0.06 3.43 7.87 -2.91 -0.02 3.40 16 9 N -0.61 -31.26 3.03 -698.11 -2.11 -33.37 16 10 C 0.14 6.19 6.69 86.35 0.58 6.77 16 11 C 0.05 1.89 5.46 86.38 0.47 2.36 16 12 N -0.53 -16.69 4.53 -861.89 -3.90 -20.59 16 13 C 0.07 1.63 2.71 46.31 0.13 1.76 16 14 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 15 C -0.12 -1.89 5.43 31.78 0.17 -1.72 16 16 C 0.10 1.04 6.49 86.73 0.56 1.61 16 17 N -0.62 -11.18 3.33 -811.80 -2.70 -13.88 16 18 C 0.52 10.53 7.84 87.66 0.69 11.22 16 19 O -0.58 -18.23 16.29 -3.05 -0.05 -18.28 16 20 C -0.05 -0.50 5.45 29.10 0.16 -0.34 16 21 C -0.01 -0.15 5.73 40.95 0.23 0.09 16 22 C -0.04 -0.91 11.79 83.52 0.98 0.07 16 23 N -0.54 -12.83 11.25 -200.31 -2.25 -15.09 16 24 C 0.19 2.89 13.04 180.26 2.35 5.24 16 25 N -0.55 -6.97 6.15 -186.49 -1.15 -8.11 16 26 H 0.43 2.35 8.96 -92.71 -0.83 1.52 16 27 C 0.12 2.88 5.23 86.86 0.45 3.34 16 28 C 0.06 1.96 5.50 86.39 0.47 2.43 16 29 C 0.19 8.82 5.39 86.35 0.47 9.28 16 30 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 2.35 7.95 -2.39 -0.02 2.33 16 33 H 0.08 2.54 6.73 -2.39 -0.02 2.52 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.10 1.26 7.94 -2.39 -0.02 1.24 16 37 H 0.10 0.59 8.14 -2.39 -0.02 0.58 16 38 H 0.10 0.47 8.14 -2.39 -0.02 0.46 16 39 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.14 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 42 H 0.24 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.06 1.56 7.74 -2.39 -0.02 1.54 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.09 2.71 6.93 -2.39 -0.02 2.69 16 47 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 48 H 0.06 3.01 6.22 -2.39 -0.01 3.00 16 Total: -1.00 -81.42 382.33 -0.81 -82.23 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.13 Total: 9.03 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 8.95 Total: 25.92 kcal Atomic # 7 Polarization: -133.74 SS G_CDS: -11.88 Total: -145.62 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.05 Total: -18.28 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -81.42 -0.81 -82.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052091068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.300 kcal (2) G-P(sol) polarization free energy of solvation -81.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds