Wall clock time and date at job start Tue Mar 31 2020 18:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46710 * 264.97668 * 3 2 1 5 5 H 1.48499 * 109.47086 * 24.97612 * 3 2 1 6 6 H 1.48500 * 109.46859 * 144.97658 * 3 2 1 7 7 C 1.38807 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00355 * 198.12203 * 7 2 1 9 9 N 1.36933 * 120.00404 * 18.12032 * 7 2 1 10 10 C 1.47083 * 120.88694 * 208.16693 * 9 7 2 11 11 C 1.53235 * 108.52350 * 231.20539 * 10 9 7 12 12 N 1.46900 * 109.34166 * 306.17195 * 11 10 9 13 13 C 1.46897 * 110.99828 * 187.25467 * 12 11 10 14 14 H 1.09004 * 110.88717 * 299.24318 * 13 12 11 15 15 C 1.55157 * 111.03670 * 175.34016 * 13 12 11 16 16 C 1.54322 * 102.86358 * 206.21260 * 15 13 12 17 17 N 1.47025 * 107.27418 * 22.52589 * 16 15 13 18 18 C 1.34776 * 125.64341 * 180.96741 * 17 16 15 19 19 O 1.21288 * 119.99626 * 179.68653 * 18 17 16 20 20 C 1.50691 * 120.00445 * 359.69453 * 18 17 16 21 21 C 1.50699 * 109.47586 * 179.97438 * 20 18 17 22 22 N 1.30504 * 125.64664 * 304.97645 * 21 20 18 23 23 C 1.34127 * 109.25511 * 180.02562 * 22 21 20 24 24 C 1.34674 * 108.02253 * 359.97438 * 23 22 21 25 25 N 1.35042 * 125.65225 * 125.27999 * 21 20 18 26 26 H 0.96998 * 126.39819 * 0.02562 * 25 21 20 27 27 C 1.47423 * 108.70411 * 0.70400 * 17 16 15 28 28 C 1.46894 * 111.26976 * 63.10033 * 12 11 10 29 29 C 1.47091 * 120.88033 * 28.18998 * 9 7 2 30 30 H 0.97001 * 119.99502 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.62382 * 111.49619 * 10 9 7 32 32 H 1.08997 * 109.62402 * 350.91990 * 10 9 7 33 33 H 1.08994 * 109.49357 * 186.20653 * 11 10 9 34 34 H 1.09004 * 109.51204 * 66.14067 * 11 10 9 35 35 H 1.08997 * 110.71996 * 324.76689 * 15 13 12 36 36 H 1.09001 * 110.72573 * 87.86744 * 15 13 12 37 37 H 1.08995 * 109.98346 * 263.04365 * 16 15 13 38 38 H 1.09000 * 109.76852 * 141.88289 * 16 15 13 39 39 H 1.08998 * 109.47471 * 59.99191 * 20 18 17 40 40 H 1.09000 * 109.46615 * 299.99782 * 20 18 17 41 41 H 1.08004 * 125.99009 * 179.97438 * 23 22 21 42 42 H 1.07996 * 126.59209 * 179.97438 * 24 23 22 43 43 H 1.08994 * 110.37141 * 94.93621 * 27 17 16 44 44 H 1.09002 * 110.36694 * 217.26558 * 27 17 16 45 45 H 1.09004 * 109.49140 * 56.85811 * 28 12 11 46 46 H 1.09002 * 109.49039 * 176.93118 * 28 12 11 47 47 H 1.08994 * 109.62768 * 248.50651 * 29 9 7 48 48 H 1.09002 * 109.62371 * 9.08254 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6040 1.9850 -1.3948 5 1 1.3987 2.6810 0.5912 6 1 3.4907 1.4730 0.8035 7 6 2.0102 -1.2022 0.0005 8 1 3.0501 -1.2254 0.2915 9 7 1.3765 -2.3588 -0.3678 10 6 1.8063 -3.6591 0.1688 11 6 2.0189 -4.6231 -1.0032 12 7 0.8035 -4.6624 -1.8274 13 6 0.9021 -5.7012 -2.8614 14 1 1.7416 -5.5067 -3.5289 15 6 -0.4244 -5.8227 -3.6570 16 6 -0.3963 -7.2846 -4.1506 17 7 0.5002 -8.0305 -3.2553 18 6 0.8067 -9.3386 -3.3623 19 8 1.5659 -9.8505 -2.5669 20 6 0.2064 -10.1651 -4.4702 21 6 0.7066 -11.5829 -4.3670 22 7 1.9595 -11.9472 -4.3395 23 6 2.0296 -13.2832 -4.2432 24 6 0.7725 -13.7650 -4.2092 25 7 -0.0671 -12.6872 -4.2936 26 1 -1.0368 -12.7119 -4.2979 27 6 1.0132 -7.1093 -2.2251 28 6 0.5220 -3.3502 -2.4246 29 6 0.2480 -2.3339 -1.3109 30 1 -0.4849 0.8401 -0.0004 31 1 1.0369 -4.0536 0.8326 32 1 2.7403 -3.5380 0.7175 33 1 2.2306 -5.6211 -0.6194 34 1 2.8581 -4.2806 -1.6087 35 1 -1.2815 -5.6480 -3.0067 36 1 -0.4338 -5.1310 -4.4993 37 1 -0.0183 -7.3256 -5.1721 38 1 -1.3998 -7.7078 -4.1072 39 1 0.4969 -9.7469 -5.4339 40 1 -0.8801 -10.1555 -4.3826 41 1 2.9355 -13.8697 -4.2004 42 1 0.4825 -14.8027 -4.1351 43 1 0.4015 -7.1681 -1.3250 44 1 2.0532 -7.3399 -1.9938 45 1 1.3820 -3.0250 -3.0102 46 1 -0.3519 -3.4250 -3.0718 47 1 -0.6710 -2.6011 -0.7894 48 1 0.1519 -1.3368 -1.7405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052101795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:00 Heat of formation + Delta-G solvation = 70.898176 kcal Electronic energy + Delta-G solvation = -28572.219680 eV Core-core repulsion = 24664.277645 eV Total energy + Delta-G solvation = -3907.942034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.30690 -40.16880 -38.45970 -36.76820 -34.17930 -32.77713 -32.47493 -31.57365 -30.36642 -30.10677 -28.71209 -27.50005 -25.81743 -23.79267 -22.85007 -22.24274 -21.83815 -21.10009 -20.38010 -19.41977 -19.15186 -18.11638 -17.35899 -17.08072 -16.29779 -15.59751 -15.41829 -15.00247 -14.56068 -14.38906 -14.18861 -14.14687 -13.98304 -13.84855 -13.51300 -13.36637 -13.28518 -13.17036 -12.87224 -12.68094 -12.37892 -12.23968 -11.85375 -11.29935 -11.19941 -11.07200 -10.89169 -10.74747 -10.43782 -10.29413 -10.26369 -10.17752 -10.05994 -9.98008 -9.73504 -9.58998 -8.75052 -8.68269 -8.50479 -7.90417 -6.65347 -5.78945 -3.20346 1.71358 2.49201 2.56503 2.89087 3.09106 3.38059 3.44917 3.45995 3.97876 4.22630 4.27483 4.49852 4.50477 4.57957 4.73078 4.82984 4.88806 5.00227 5.15196 5.22107 5.29186 5.38846 5.39187 5.40683 5.46423 5.73394 5.78872 5.82683 5.84812 5.88979 5.94917 6.06629 6.15258 6.17953 6.25228 6.33023 6.49015 6.52622 6.68301 6.93756 7.01715 7.20335 7.36560 7.55566 7.60213 7.66776 7.81724 7.88284 8.05631 8.43902 9.21099 9.84293 10.43832 11.30031 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.038273 B = 0.002005 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.402917 B =13962.647137 C =14361.415908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.042 3.958 12 N -0.521 5.521 13 C 0.068 3.932 14 H 0.051 0.949 15 C -0.124 4.124 16 C 0.101 3.899 17 N -0.620 5.620 18 C 0.532 3.468 19 O -0.514 6.514 20 C -0.049 4.049 21 C 0.217 3.783 22 N -0.460 5.460 23 C -0.026 4.026 24 C -0.057 4.057 25 N -0.567 5.567 26 H 0.417 0.583 27 C 0.119 3.881 28 C 0.036 3.964 29 C 0.180 3.820 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.170 0.830 42 H 0.177 0.823 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.025 0.975 46 H 0.063 0.937 47 H 0.027 0.973 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 -23.076 -13.195 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.088 4.088 12 N -0.246 5.246 13 C -0.042 4.042 14 H 0.069 0.931 15 C -0.162 4.162 16 C -0.023 4.023 17 N -0.356 5.356 18 C 0.318 3.682 19 O -0.388 6.388 20 C -0.091 4.091 21 C -0.048 4.048 22 N -0.179 5.179 23 C -0.175 4.175 24 C -0.190 4.190 25 N -0.170 5.170 26 H 0.255 0.745 27 C -0.004 4.004 28 C -0.093 4.093 29 C 0.054 3.946 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.187 0.813 42 H 0.194 0.806 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.044 0.956 46 H 0.081 0.919 47 H 0.046 0.954 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.582 -22.887 -12.466 26.461 hybrid contribution -0.135 0.443 -0.563 0.729 sum -4.717 -22.444 -13.029 26.377 Atomic orbital electron populations 1.70050 1.05210 1.25510 1.53802 1.25046 0.95276 0.98400 1.00882 0.86321 0.79118 0.83649 0.77764 1.21463 1.21749 1.20499 1.19171 0.92902 0.84942 1.41249 0.91726 1.44108 1.37409 1.01415 1.48871 1.20978 0.97958 0.86341 0.92479 1.22673 0.89905 0.99668 0.96530 1.62005 1.36725 1.05232 1.20656 1.22753 0.96606 0.91706 0.93094 0.93127 1.22697 0.99056 0.94073 1.00364 1.22099 0.93768 0.92589 0.93801 1.48404 1.47580 1.08299 1.31304 1.19696 0.81874 0.80581 0.86001 1.90794 1.34861 1.70346 1.42796 1.19877 1.01302 0.87438 1.00443 1.22335 0.86758 0.89328 1.06343 1.70262 1.17504 1.12637 1.17480 1.22411 0.96869 0.90961 1.07244 1.22743 0.91224 0.93026 1.12044 1.43217 1.10014 1.06818 1.56981 0.74524 1.22211 1.00169 0.87007 0.90998 1.22906 0.98834 0.88959 0.98554 1.20811 0.89660 0.96172 0.87986 0.93640 0.95600 0.92552 0.91819 0.95266 0.89098 0.90055 0.91329 0.91228 0.86353 0.87575 0.81310 0.80561 0.90199 0.90619 0.95635 0.91874 0.95450 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 11.35 55.49 0.63 -25.36 16 2 C 0.00 0.08 4.89 -17.43 -0.09 -0.01 16 3 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.95 9.60 -15.06 -0.14 -7.09 16 8 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -14.92 3.03 -172.01 -0.52 -15.44 16 10 C 0.15 3.17 6.69 -3.60 -0.02 3.15 16 11 C 0.04 0.74 5.49 -3.70 -0.02 0.72 16 12 N -0.52 -8.69 4.53 -223.78 -1.01 -9.71 16 13 C 0.07 0.90 2.71 -65.56 -0.18 0.73 16 14 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 15 C -0.12 -1.25 5.27 -24.90 -0.13 -1.38 16 16 C 0.10 0.81 6.48 -3.06 -0.02 0.79 16 17 N -0.62 -7.02 3.33 -170.52 -0.57 -7.58 16 18 C 0.53 6.64 7.84 -10.99 -0.09 6.55 16 19 O -0.51 -8.89 15.81 5.55 0.09 -8.80 16 20 C -0.05 -0.40 5.52 -29.04 -0.16 -0.56 16 21 C 0.22 2.29 6.96 -155.41 -1.08 1.21 16 22 N -0.46 -6.27 10.58 -10.81 -0.11 -6.38 16 23 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 24 C -0.06 -0.43 12.04 -16.56 -0.20 -0.63 16 25 N -0.57 -4.14 6.15 -10.23 -0.06 -4.20 16 26 H 0.42 1.47 8.96 -40.82 -0.37 1.11 16 27 C 0.12 1.58 5.40 -2.53 -0.01 1.56 16 28 C 0.04 0.67 5.47 -3.71 -0.02 0.65 16 29 C 0.18 4.21 5.41 -3.60 -0.02 4.19 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.17 7.95 -51.93 -0.41 0.75 16 33 H 0.06 1.01 6.85 -51.93 -0.36 0.65 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.17 1.41 8.06 -52.48 -0.42 0.98 16 42 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.11 7.74 -51.93 -0.40 0.71 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 1.00 6.81 -51.93 -0.35 0.65 16 47 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 2.17 6.28 -51.93 -0.33 1.84 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -36.28 381.73 -10.91 -47.19 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.67 Total: -1.43 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -2.39 Total: 9.38 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -1.65 Total: -68.68 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.28 -10.91 -47.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052101795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.083 kcal (2) G-P(sol) polarization free energy of solvation -36.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds