Wall clock time and date at job start Tue Mar 31 2020 18:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46710 * 264.97668 * 3 2 1 5 5 H 1.48499 * 109.47086 * 24.97612 * 3 2 1 6 6 H 1.48500 * 109.46859 * 144.97658 * 3 2 1 7 7 C 1.38807 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00355 * 198.12203 * 7 2 1 9 9 N 1.36933 * 120.00404 * 18.12032 * 7 2 1 10 10 C 1.47083 * 120.88694 * 208.16693 * 9 7 2 11 11 C 1.53235 * 108.52350 * 231.20539 * 10 9 7 12 12 N 1.46900 * 109.34166 * 306.17195 * 11 10 9 13 13 C 1.46897 * 110.99828 * 187.25467 * 12 11 10 14 14 H 1.09004 * 110.88717 * 299.24318 * 13 12 11 15 15 C 1.55157 * 111.03670 * 175.34016 * 13 12 11 16 16 C 1.54322 * 102.86358 * 206.21260 * 15 13 12 17 17 N 1.47025 * 107.27418 * 22.52589 * 16 15 13 18 18 C 1.34776 * 125.64341 * 180.96741 * 17 16 15 19 19 O 1.21288 * 119.99626 * 179.68653 * 18 17 16 20 20 C 1.50691 * 120.00445 * 359.69453 * 18 17 16 21 21 C 1.50699 * 109.47586 * 179.97438 * 20 18 17 22 22 N 1.30504 * 125.64664 * 304.97645 * 21 20 18 23 23 C 1.34127 * 109.25511 * 180.02562 * 22 21 20 24 24 C 1.34674 * 108.02253 * 359.97438 * 23 22 21 25 25 N 1.35042 * 125.65225 * 125.27999 * 21 20 18 26 26 H 0.96998 * 126.39819 * 0.02562 * 25 21 20 27 27 C 1.47423 * 108.70411 * 0.70400 * 17 16 15 28 28 C 1.46894 * 111.26976 * 63.10033 * 12 11 10 29 29 C 1.47091 * 120.88033 * 28.18998 * 9 7 2 30 30 H 0.97001 * 119.99502 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.62382 * 111.49619 * 10 9 7 32 32 H 1.08997 * 109.62402 * 350.91990 * 10 9 7 33 33 H 1.08994 * 109.49357 * 186.20653 * 11 10 9 34 34 H 1.09004 * 109.51204 * 66.14067 * 11 10 9 35 35 H 1.08997 * 110.71996 * 324.76689 * 15 13 12 36 36 H 1.09001 * 110.72573 * 87.86744 * 15 13 12 37 37 H 1.08995 * 109.98346 * 263.04365 * 16 15 13 38 38 H 1.09000 * 109.76852 * 141.88289 * 16 15 13 39 39 H 1.08998 * 109.47471 * 59.99191 * 20 18 17 40 40 H 1.09000 * 109.46615 * 299.99782 * 20 18 17 41 41 H 1.08004 * 125.99009 * 179.97438 * 23 22 21 42 42 H 1.07996 * 126.59209 * 179.97438 * 24 23 22 43 43 H 1.08994 * 110.37141 * 94.93621 * 27 17 16 44 44 H 1.09002 * 110.36694 * 217.26558 * 27 17 16 45 45 H 1.09004 * 109.49140 * 56.85811 * 28 12 11 46 46 H 1.09002 * 109.49039 * 176.93118 * 28 12 11 47 47 H 1.08994 * 109.62768 * 248.50651 * 29 9 7 48 48 H 1.09002 * 109.62371 * 9.08254 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6040 1.9850 -1.3948 5 1 1.3987 2.6810 0.5912 6 1 3.4907 1.4730 0.8035 7 6 2.0102 -1.2022 0.0005 8 1 3.0501 -1.2254 0.2915 9 7 1.3765 -2.3588 -0.3678 10 6 1.8063 -3.6591 0.1688 11 6 2.0189 -4.6231 -1.0032 12 7 0.8035 -4.6624 -1.8274 13 6 0.9021 -5.7012 -2.8614 14 1 1.7416 -5.5067 -3.5289 15 6 -0.4244 -5.8227 -3.6570 16 6 -0.3963 -7.2846 -4.1506 17 7 0.5002 -8.0305 -3.2553 18 6 0.8067 -9.3386 -3.3623 19 8 1.5659 -9.8505 -2.5669 20 6 0.2064 -10.1651 -4.4702 21 6 0.7066 -11.5829 -4.3670 22 7 1.9595 -11.9472 -4.3395 23 6 2.0296 -13.2832 -4.2432 24 6 0.7725 -13.7650 -4.2092 25 7 -0.0671 -12.6872 -4.2936 26 1 -1.0368 -12.7119 -4.2979 27 6 1.0132 -7.1093 -2.2251 28 6 0.5220 -3.3502 -2.4246 29 6 0.2480 -2.3339 -1.3109 30 1 -0.4849 0.8401 -0.0004 31 1 1.0369 -4.0536 0.8326 32 1 2.7403 -3.5380 0.7175 33 1 2.2306 -5.6211 -0.6194 34 1 2.8581 -4.2806 -1.6087 35 1 -1.2815 -5.6480 -3.0067 36 1 -0.4338 -5.1310 -4.4993 37 1 -0.0183 -7.3256 -5.1721 38 1 -1.3998 -7.7078 -4.1072 39 1 0.4969 -9.7469 -5.4339 40 1 -0.8801 -10.1555 -4.3826 41 1 2.9355 -13.8697 -4.2004 42 1 0.4825 -14.8027 -4.1351 43 1 0.4015 -7.1681 -1.3250 44 1 2.0532 -7.3399 -1.9938 45 1 1.3820 -3.0250 -3.0102 46 1 -0.3519 -3.4250 -3.0718 47 1 -0.6710 -2.6011 -0.7894 48 1 0.1519 -1.3368 -1.7405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052101795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:59 Heat of formation + Delta-G solvation = 44.113071 kcal Electronic energy + Delta-G solvation = -28573.381169 eV Core-core repulsion = 24664.277645 eV Total energy + Delta-G solvation = -3909.103524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.95444 -41.14066 -39.76234 -38.05713 -35.80117 -33.60768 -33.39482 -32.97063 -31.83077 -31.41517 -29.78146 -28.49107 -27.35333 -25.09952 -24.46777 -23.58482 -22.48607 -21.88204 -21.51582 -20.81068 -20.22898 -18.81406 -18.75328 -18.20364 -17.56123 -16.82418 -16.48709 -16.24662 -15.86897 -15.60519 -15.30521 -15.28413 -15.18723 -15.02817 -14.76924 -14.68396 -14.51378 -14.07925 -13.87980 -13.65072 -13.57757 -13.31719 -13.03853 -13.00086 -12.66994 -12.53686 -12.51346 -12.16418 -12.01865 -11.86494 -11.78019 -11.43263 -11.36498 -10.99166 -10.97233 -10.85425 -10.58315 -9.65228 -9.33640 -9.31739 -8.67061 -7.88536 -5.33528 1.08221 1.46846 1.47764 1.56522 1.62948 1.79935 2.26096 2.37841 2.50612 2.97817 3.26352 3.31128 3.45994 3.67429 3.72709 3.92202 4.03254 4.10381 4.22669 4.32761 4.34968 4.40850 4.43007 4.44718 4.55873 4.58977 4.59747 4.68800 4.70044 4.79235 4.84115 4.88375 4.94135 5.02298 5.06239 5.15237 5.19288 5.23199 5.30751 5.35578 5.62103 5.68536 5.83889 6.13367 6.25058 6.37660 6.48726 6.60140 7.13688 7.16980 7.22881 7.83295 8.38473 9.18181 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.038273 B = 0.002005 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.402917 B =13962.647137 C =14361.415908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.047 4.047 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.267 4.267 8 H 0.063 0.937 9 N -0.614 5.614 10 C 0.146 3.854 11 C 0.055 3.945 12 N -0.526 5.526 13 C 0.069 3.931 14 H 0.049 0.951 15 C -0.119 4.119 16 C 0.101 3.899 17 N -0.618 5.618 18 C 0.526 3.474 19 O -0.574 6.574 20 C -0.039 4.039 21 C 0.198 3.802 22 N -0.518 5.518 23 C -0.071 4.071 24 C -0.034 4.034 25 N -0.552 5.552 26 H 0.437 0.563 27 C 0.123 3.877 28 C 0.055 3.945 29 C 0.186 3.814 30 H 0.251 0.749 31 H 0.016 0.984 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.022 0.978 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.141 0.859 40 H 0.151 0.849 41 H 0.175 0.825 42 H 0.217 0.783 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.018 0.982 46 H 0.094 0.906 47 H 0.002 0.998 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.814 -24.553 -15.487 29.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.795 3.205 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.397 4.397 8 H 0.080 0.920 9 N -0.338 5.338 10 C 0.020 3.980 11 C -0.075 4.075 12 N -0.252 5.252 13 C -0.040 4.040 14 H 0.067 0.933 15 C -0.157 4.157 16 C -0.020 4.020 17 N -0.353 5.353 18 C 0.315 3.685 19 O -0.453 6.453 20 C -0.080 4.080 21 C -0.067 4.067 22 N -0.238 5.238 23 C -0.219 4.219 24 C -0.169 4.169 25 N -0.158 5.158 26 H 0.278 0.722 27 C -0.001 4.001 28 C -0.074 4.074 29 C 0.060 3.940 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.040 0.960 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.159 0.841 40 H 0.169 0.831 41 H 0.192 0.808 42 H 0.233 0.767 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.112 0.888 47 H 0.020 0.980 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.178 -24.378 -14.792 29.177 hybrid contribution 0.346 0.825 0.218 0.920 sum -5.832 -23.553 -14.575 28.305 Atomic orbital electron populations 1.70194 1.06542 1.25969 1.54998 1.25792 0.96072 1.01412 1.01043 0.85294 0.77925 0.79475 0.77790 1.20945 1.21961 1.19740 1.19462 0.93075 0.86212 1.40958 0.91969 1.44396 1.37639 1.02056 1.49702 1.21083 0.97421 0.85652 0.93854 1.22444 0.90233 0.99440 0.95372 1.61916 1.36070 1.05221 1.21944 1.22761 0.98817 0.90106 0.92297 0.93279 1.22729 0.96451 0.96244 1.00295 1.22358 0.94970 0.90586 0.94104 1.48480 1.47611 1.08073 1.31087 1.20523 0.81006 0.80759 0.86228 1.90770 1.37634 1.71562 1.45311 1.19997 1.03441 0.85329 0.99227 1.22688 0.86548 0.90887 1.06582 1.70162 1.19926 1.14366 1.19311 1.22764 0.98782 0.90645 1.09661 1.23296 0.90174 0.94569 1.08833 1.43179 1.10984 1.05898 1.55704 0.72200 1.21967 0.98842 0.87704 0.91550 1.22576 0.99827 0.88422 0.96567 1.20619 0.88339 0.96217 0.88812 0.93968 0.96578 0.92568 0.89887 0.95961 0.89616 0.88281 0.88528 0.87865 0.84124 0.83102 0.80825 0.76663 0.91406 0.92813 0.96362 0.88757 0.97977 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.08 11.35 21.65 0.25 -54.84 16 2 C -0.05 -2.66 4.89 84.86 0.41 -2.25 16 3 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.27 -14.97 9.60 84.03 0.81 -14.16 16 8 H 0.06 3.44 7.89 -2.91 -0.02 3.41 16 9 N -0.61 -31.59 3.03 -698.13 -2.11 -33.70 16 10 C 0.15 6.34 6.69 86.35 0.58 6.92 16 11 C 0.05 1.94 5.49 86.38 0.47 2.41 16 12 N -0.53 -17.16 4.53 -861.92 -3.90 -21.07 16 13 C 0.07 1.72 2.71 46.31 0.13 1.85 16 14 H 0.05 1.27 8.14 -2.38 -0.02 1.26 16 15 C -0.12 -1.98 5.27 31.78 0.17 -1.82 16 16 C 0.10 1.16 6.48 86.73 0.56 1.73 16 17 N -0.62 -12.54 3.33 -811.80 -2.70 -15.24 16 18 C 0.53 12.29 7.84 87.65 0.69 12.98 16 19 O -0.57 -20.18 15.81 -3.06 -0.05 -20.23 16 20 C -0.04 -0.50 5.52 29.10 0.16 -0.34 16 21 C 0.20 3.82 6.96 138.13 0.96 4.78 16 22 N -0.52 -14.11 10.58 -188.12 -1.99 -16.10 16 23 C -0.07 -1.49 11.87 83.52 0.99 -0.50 16 24 C -0.03 -0.44 12.04 83.09 1.00 0.56 16 25 N -0.55 -6.50 6.15 -186.26 -1.15 -7.65 16 26 H 0.44 1.39 8.96 -92.71 -0.83 0.56 16 27 C 0.12 3.17 5.40 86.86 0.47 3.64 16 28 C 0.06 1.98 5.47 86.38 0.47 2.45 16 29 C 0.19 8.92 5.41 86.34 0.47 9.38 16 30 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 2.39 7.95 -2.39 -0.02 2.37 16 33 H 0.08 2.63 6.85 -2.39 -0.02 2.61 16 34 H 0.02 0.82 8.14 -2.38 -0.02 0.81 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.35 7.93 -2.39 -0.02 1.33 16 37 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.22 0.86 8.06 -2.91 -0.02 0.83 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.05 1.61 7.74 -2.39 -0.02 1.59 16 45 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.09 2.80 6.81 -2.39 -0.02 2.78 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.05 2.88 6.28 -2.39 -0.01 2.86 16 Total: -1.00 -84.83 381.73 -1.16 -85.98 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.13 Total: 8.11 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 8.34 Total: 27.63 kcal Atomic # 7 Polarization: -137.00 SS G_CDS: -11.61 Total: -148.60 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -84.83 -1.16 -85.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052101795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.098 kcal (2) G-P(sol) polarization free energy of solvation -84.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds