Wall clock time and date at job start Tue Mar 31 2020 18:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99726 * 2 1 4 4 H 1.48493 * 109.47334 * 271.97326 * 3 2 1 5 5 H 1.48494 * 109.47065 * 31.97820 * 3 2 1 6 6 H 1.48506 * 109.47005 * 151.97302 * 3 2 1 7 7 C 1.38818 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99573 * 339.44478 * 7 2 1 9 9 N 1.36936 * 119.99822 * 159.44634 * 7 2 1 10 10 C 1.47076 * 120.88312 * 333.50304 * 9 7 2 11 11 C 1.53237 * 108.52211 * 231.16936 * 10 9 7 12 12 N 1.46897 * 109.34194 * 306.16723 * 11 10 9 13 13 C 1.46895 * 111.00227 * 187.25295 * 12 11 10 14 14 H 1.08999 * 110.89177 * 303.88578 * 13 12 11 15 15 C 1.55164 * 111.03463 * 67.79052 * 13 12 11 16 16 C 1.54319 * 102.94113 * 153.58981 * 15 13 12 17 17 N 1.47020 * 107.27520 * 337.80677 * 16 15 13 18 18 C 1.34774 * 125.65490 * 178.98133 * 17 16 15 19 19 O 1.21277 * 120.00437 * 179.97438 * 18 17 16 20 20 C 1.50707 * 119.99706 * 359.95151 * 18 17 16 21 21 C 1.50697 * 109.46921 * 180.02562 * 20 18 17 22 22 N 1.30503 * 125.65017 * 305.02196 * 21 20 18 23 23 C 1.34134 * 109.25390 * 180.02562 * 22 21 20 24 24 C 1.34673 * 108.02117 * 0.02562 * 23 22 21 25 25 N 1.35041 * 125.65020 * 124.72177 * 21 20 18 26 26 H 0.97002 * 126.39768 * 359.97438 * 25 21 20 27 27 C 1.47430 * 108.70050 * 358.94172 * 17 16 15 28 28 C 1.46899 * 111.26467 * 63.10519 * 12 11 10 29 29 C 1.47081 * 120.87850 * 153.48994 * 9 7 2 30 30 H 0.96998 * 119.99780 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.62602 * 111.45814 * 10 9 7 32 32 H 1.09008 * 109.79133 * 350.97604 * 10 9 7 33 33 H 1.09006 * 109.49120 * 186.20960 * 11 10 9 34 34 H 1.08992 * 109.49464 * 66.13370 * 11 10 9 35 35 H 1.09002 * 110.71575 * 271.95427 * 15 13 12 36 36 H 1.08993 * 110.71890 * 35.04933 * 15 13 12 37 37 H 1.09004 * 109.88277 * 97.22097 * 16 15 13 38 38 H 1.08999 * 109.88491 * 218.38528 * 16 15 13 39 39 H 1.09001 * 109.46936 * 300.00671 * 20 18 17 40 40 H 1.09000 * 109.46720 * 60.00253 * 20 18 17 41 41 H 1.07993 * 125.98399 * 180.02562 * 23 22 21 42 42 H 1.07992 * 126.58890 * 180.02562 * 24 23 22 43 43 H 1.09002 * 110.36540 * 265.28803 * 27 17 16 44 44 H 1.08997 * 110.36786 * 142.97378 * 27 17 16 45 45 H 1.08997 * 109.49345 * 56.85864 * 28 12 11 46 46 H 1.09003 * 109.49166 * 176.93558 * 28 12 11 47 47 H 1.08998 * 109.62576 * 248.54259 * 29 9 7 48 48 H 1.08997 * 109.62592 * 9.12050 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4559 2.0706 -1.3992 5 1 1.4691 2.6402 0.7414 6 1 3.5680 1.4286 0.6579 7 6 2.0104 -1.2022 0.0005 8 1 1.5219 -2.1075 0.3293 9 7 3.3143 -1.2400 -0.4158 10 6 3.8308 -0.2484 -1.3714 11 6 4.5272 -0.9921 -2.5159 12 7 5.5364 -1.9038 -1.9608 13 6 6.3440 -2.5083 -3.0287 14 1 5.7104 -3.0207 -3.7525 15 6 7.2343 -1.4443 -3.7237 16 6 8.4182 -2.2788 -4.2562 17 7 8.4775 -3.5116 -3.4574 18 6 9.3633 -4.5137 -3.6239 19 8 9.3192 -5.4881 -2.9032 20 6 10.4083 -4.4235 -4.7060 21 6 11.2657 -5.6626 -4.6808 22 7 11.9161 -6.1165 -3.6445 23 6 12.5710 -7.2354 -3.9885 24 6 12.3170 -7.4840 -5.2876 25 7 11.4836 -6.4903 -5.7253 26 1 11.1199 -6.3966 -6.6197 27 6 7.4082 -3.4698 -2.4434 28 6 4.9162 -2.9371 -1.1208 29 6 4.2357 -2.2732 0.0810 30 1 -0.4850 0.8400 -0.0004 31 1 4.5454 0.4049 -0.8707 32 1 3.0074 0.3456 -1.7681 33 1 5.0113 -0.2722 -3.1761 34 1 3.7904 -1.5645 -3.0793 35 1 6.6973 -0.9690 -4.5446 36 1 7.5763 -0.6991 -3.0057 37 1 8.2561 -2.5246 -5.3057 38 1 9.3466 -1.7190 -4.1435 39 1 9.9197 -4.3398 -5.6768 40 1 11.0322 -3.5460 -4.5364 41 1 13.1928 -7.8323 -3.3379 42 1 12.6937 -8.3116 -5.8701 43 1 7.7939 -3.0806 -1.5011 44 1 6.9834 -4.4632 -2.2988 45 1 4.1740 -3.4825 -1.7036 46 1 5.6824 -3.6280 -0.7690 47 1 4.9892 -1.8146 0.7213 48 1 3.6778 -3.0207 0.6450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052101796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:04 Heat of formation + Delta-G solvation = 77.565301 kcal Electronic energy + Delta-G solvation = -28685.747556 eV Core-core repulsion = 24778.094630 eV Total energy + Delta-G solvation = -3907.652926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.34258 -40.26929 -38.64851 -36.98480 -34.35042 -32.81245 -32.52008 -31.70971 -30.79945 -30.38201 -28.93229 -27.62125 -25.94213 -24.02660 -22.72113 -22.63779 -21.87752 -21.16256 -20.57342 -19.58422 -19.37401 -18.15551 -17.43345 -17.14931 -16.42069 -15.86512 -15.45306 -15.02697 -14.92495 -14.41624 -14.37205 -14.20504 -14.06869 -13.98673 -13.89738 -13.72652 -13.29756 -13.13375 -12.84867 -12.69564 -12.52532 -12.28116 -12.19513 -11.86440 -11.50630 -11.32941 -11.03210 -10.86947 -10.57494 -10.29753 -10.28821 -10.21348 -10.07578 -10.02474 -9.82022 -9.46272 -8.83073 -8.71907 -8.65836 -8.09815 -6.96758 -5.94550 -3.29816 1.67690 2.43577 2.50240 2.85069 3.03678 3.31083 3.49238 3.53567 3.93305 4.05073 4.18682 4.45099 4.47104 4.53347 4.63624 4.77492 4.84310 4.91842 4.96329 5.10252 5.13362 5.19268 5.30960 5.32332 5.37133 5.59733 5.64447 5.68226 5.72155 5.75891 5.82635 5.90268 5.94878 6.00712 6.05428 6.11717 6.21237 6.36293 6.45825 6.57001 6.64293 6.87400 6.98030 7.27262 7.35337 7.39693 7.84807 7.94334 7.99055 8.32709 8.93226 9.71867 10.10989 11.21468 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.002130 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.027387 B =13144.428769 C =13547.815465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.258 4.258 8 H 0.086 0.914 9 N -0.608 5.608 10 C 0.130 3.870 11 C 0.045 3.955 12 N -0.522 5.522 13 C 0.069 3.931 14 H 0.053 0.947 15 C -0.124 4.124 16 C 0.101 3.899 17 N -0.620 5.620 18 C 0.533 3.467 19 O -0.513 6.513 20 C -0.049 4.049 21 C 0.216 3.784 22 N -0.459 5.459 23 C -0.026 4.026 24 C -0.056 4.056 25 N -0.567 5.567 26 H 0.417 0.583 27 C 0.118 3.882 28 C 0.038 3.962 29 C 0.152 3.848 30 H 0.262 0.738 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.170 0.830 42 H 0.177 0.823 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.031 0.969 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.904 -8.310 -16.766 30.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.386 4.386 8 H 0.103 0.897 9 N -0.333 5.333 10 C 0.005 3.995 11 C -0.085 4.085 12 N -0.248 5.248 13 C -0.041 4.041 14 H 0.071 0.929 15 C -0.162 4.162 16 C -0.022 4.022 17 N -0.357 5.357 18 C 0.319 3.681 19 O -0.386 6.386 20 C -0.090 4.090 21 C -0.049 4.049 22 N -0.178 5.178 23 C -0.175 4.175 24 C -0.190 4.190 25 N -0.170 5.170 26 H 0.255 0.745 27 C -0.005 4.005 28 C -0.091 4.091 29 C 0.026 3.974 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.187 0.813 42 H 0.195 0.805 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.052 0.948 46 H 0.088 0.912 47 H 0.049 0.951 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.109 -8.222 -15.218 29.672 hybrid contribution -0.324 0.150 -1.901 1.934 sum 23.785 -8.072 -17.119 30.397 Atomic orbital electron populations 1.69839 1.05720 1.26527 1.53208 1.25277 0.95260 0.97624 0.99655 0.86937 0.80024 0.84532 0.77006 1.21686 1.23208 1.19433 1.18933 0.84773 0.94818 1.40099 0.89683 1.44416 1.08511 1.32230 1.48115 1.21422 0.96493 0.91976 0.89657 1.22646 0.92562 0.95466 0.97794 1.61991 1.24595 1.18703 1.19491 1.22750 0.93931 0.94264 0.93165 0.92885 1.22690 0.94888 0.97826 1.00775 1.22096 0.99713 0.85312 0.95125 1.48393 1.32519 1.19234 1.35507 1.19712 0.81250 0.81941 0.85217 1.90796 1.71112 1.30902 1.45840 1.19878 0.95034 0.94335 0.99788 1.22329 1.02548 0.96044 0.83938 1.70265 1.10043 1.11125 1.26391 1.22415 1.04017 0.97154 0.93869 1.22749 1.01505 0.96700 0.98050 1.43217 1.38947 1.21689 1.13189 0.74536 1.22230 0.86705 0.99910 0.91648 1.22702 0.96992 0.93127 0.96248 1.21008 0.92064 0.91603 0.92731 0.92800 0.94928 0.90736 0.91505 0.94576 0.90082 0.89076 0.91462 0.90987 0.87631 0.86270 0.81277 0.80543 0.90067 0.90545 0.94757 0.91239 0.95067 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.85 13.97 55.49 0.78 -27.08 16 2 C 0.02 0.59 5.24 -17.43 -0.09 0.50 16 3 Si 0.88 22.28 24.31 -169.99 -4.13 18.15 16 4 H -0.29 -6.93 6.58 56.52 0.37 -6.55 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.73 6.61 56.52 0.37 -6.36 16 7 C -0.26 -7.21 10.08 -15.06 -0.15 -7.36 16 8 H 0.09 2.54 8.05 -52.49 -0.42 2.11 16 9 N -0.61 -14.45 2.82 -172.02 -0.48 -14.93 16 10 C 0.13 2.80 4.35 -3.61 -0.02 2.78 16 11 C 0.04 0.76 5.52 -3.70 -0.02 0.74 16 12 N -0.52 -8.03 4.53 -223.79 -1.01 -9.05 16 13 C 0.07 0.83 2.72 -65.56 -0.18 0.65 16 14 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 15 C -0.12 -1.12 5.62 -24.90 -0.14 -1.26 16 16 C 0.10 0.73 6.49 -3.07 -0.02 0.71 16 17 N -0.62 -6.55 3.33 -170.52 -0.57 -7.11 16 18 C 0.53 6.33 7.84 -10.98 -0.09 6.24 16 19 O -0.51 -8.59 15.81 5.56 0.09 -8.50 16 20 C -0.05 -0.37 5.52 -29.03 -0.16 -0.53 16 21 C 0.22 2.20 6.96 -155.42 -1.08 1.11 16 22 N -0.46 -6.10 10.58 -10.82 -0.11 -6.22 16 23 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 24 C -0.06 -0.41 12.04 -16.56 -0.20 -0.61 16 25 N -0.57 -3.98 6.15 -10.23 -0.06 -4.04 16 26 H 0.42 1.36 8.96 -40.82 -0.37 0.99 16 27 C 0.12 1.45 5.03 -2.53 -0.01 1.43 16 28 C 0.04 0.63 5.42 -3.70 -0.02 0.61 16 29 C 0.15 3.01 6.69 -3.60 -0.02 2.99 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.03 0.71 6.94 -51.93 -0.36 0.35 16 32 H 0.07 1.74 4.61 -51.92 -0.24 1.50 16 33 H 0.07 0.96 7.11 -51.93 -0.37 0.59 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.64 7.97 -51.93 -0.41 0.23 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 44 H 0.08 1.04 7.77 -51.93 -0.40 0.63 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 1.01 6.60 -51.93 -0.34 0.67 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.07 1.29 7.95 -51.93 -0.41 0.88 16 LS Contribution 374.96 15.07 5.65 5.65 Total: -1.00 -37.51 374.96 -9.87 -47.38 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.60 Total: -1.79 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -2.41 Total: 7.53 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -1.47 Total: -68.43 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.13 Total: 18.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.51 -9.87 -47.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052101796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.949 kcal (2) G-P(sol) polarization free energy of solvation -37.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds