Wall clock time and date at job start Tue Mar 31 2020 18:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99726 * 2 1 4 4 H 1.48493 * 109.47334 * 271.97326 * 3 2 1 5 5 H 1.48494 * 109.47065 * 31.97820 * 3 2 1 6 6 H 1.48506 * 109.47005 * 151.97302 * 3 2 1 7 7 C 1.38818 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99573 * 339.44478 * 7 2 1 9 9 N 1.36936 * 119.99822 * 159.44634 * 7 2 1 10 10 C 1.47076 * 120.88312 * 333.50304 * 9 7 2 11 11 C 1.53237 * 108.52211 * 231.16936 * 10 9 7 12 12 N 1.46897 * 109.34194 * 306.16723 * 11 10 9 13 13 C 1.46895 * 111.00227 * 187.25295 * 12 11 10 14 14 H 1.08999 * 110.89177 * 303.88578 * 13 12 11 15 15 C 1.55164 * 111.03463 * 67.79052 * 13 12 11 16 16 C 1.54319 * 102.94113 * 153.58981 * 15 13 12 17 17 N 1.47020 * 107.27520 * 337.80677 * 16 15 13 18 18 C 1.34774 * 125.65490 * 178.98133 * 17 16 15 19 19 O 1.21277 * 120.00437 * 179.97438 * 18 17 16 20 20 C 1.50707 * 119.99706 * 359.95151 * 18 17 16 21 21 C 1.50697 * 109.46921 * 180.02562 * 20 18 17 22 22 N 1.30503 * 125.65017 * 305.02196 * 21 20 18 23 23 C 1.34134 * 109.25390 * 180.02562 * 22 21 20 24 24 C 1.34673 * 108.02117 * 0.02562 * 23 22 21 25 25 N 1.35041 * 125.65020 * 124.72177 * 21 20 18 26 26 H 0.97002 * 126.39768 * 359.97438 * 25 21 20 27 27 C 1.47430 * 108.70050 * 358.94172 * 17 16 15 28 28 C 1.46899 * 111.26467 * 63.10519 * 12 11 10 29 29 C 1.47081 * 120.87850 * 153.48994 * 9 7 2 30 30 H 0.96998 * 119.99780 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.62602 * 111.45814 * 10 9 7 32 32 H 1.09008 * 109.79133 * 350.97604 * 10 9 7 33 33 H 1.09006 * 109.49120 * 186.20960 * 11 10 9 34 34 H 1.08992 * 109.49464 * 66.13370 * 11 10 9 35 35 H 1.09002 * 110.71575 * 271.95427 * 15 13 12 36 36 H 1.08993 * 110.71890 * 35.04933 * 15 13 12 37 37 H 1.09004 * 109.88277 * 97.22097 * 16 15 13 38 38 H 1.08999 * 109.88491 * 218.38528 * 16 15 13 39 39 H 1.09001 * 109.46936 * 300.00671 * 20 18 17 40 40 H 1.09000 * 109.46720 * 60.00253 * 20 18 17 41 41 H 1.07993 * 125.98399 * 180.02562 * 23 22 21 42 42 H 1.07992 * 126.58890 * 180.02562 * 24 23 22 43 43 H 1.09002 * 110.36540 * 265.28803 * 27 17 16 44 44 H 1.08997 * 110.36786 * 142.97378 * 27 17 16 45 45 H 1.08997 * 109.49345 * 56.85864 * 28 12 11 46 46 H 1.09003 * 109.49166 * 176.93558 * 28 12 11 47 47 H 1.08998 * 109.62576 * 248.54259 * 29 9 7 48 48 H 1.08997 * 109.62592 * 9.12050 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4559 2.0706 -1.3992 5 1 1.4691 2.6402 0.7414 6 1 3.5680 1.4286 0.6579 7 6 2.0104 -1.2022 0.0005 8 1 1.5219 -2.1075 0.3293 9 7 3.3143 -1.2400 -0.4158 10 6 3.8308 -0.2484 -1.3714 11 6 4.5272 -0.9921 -2.5159 12 7 5.5364 -1.9038 -1.9608 13 6 6.3440 -2.5083 -3.0287 14 1 5.7104 -3.0207 -3.7525 15 6 7.2343 -1.4443 -3.7237 16 6 8.4182 -2.2788 -4.2562 17 7 8.4775 -3.5116 -3.4574 18 6 9.3633 -4.5137 -3.6239 19 8 9.3192 -5.4881 -2.9032 20 6 10.4083 -4.4235 -4.7060 21 6 11.2657 -5.6626 -4.6808 22 7 11.9161 -6.1165 -3.6445 23 6 12.5710 -7.2354 -3.9885 24 6 12.3170 -7.4840 -5.2876 25 7 11.4836 -6.4903 -5.7253 26 1 11.1199 -6.3966 -6.6197 27 6 7.4082 -3.4698 -2.4434 28 6 4.9162 -2.9371 -1.1208 29 6 4.2357 -2.2732 0.0810 30 1 -0.4850 0.8400 -0.0004 31 1 4.5454 0.4049 -0.8707 32 1 3.0074 0.3456 -1.7681 33 1 5.0113 -0.2722 -3.1761 34 1 3.7904 -1.5645 -3.0793 35 1 6.6973 -0.9690 -4.5446 36 1 7.5763 -0.6991 -3.0057 37 1 8.2561 -2.5246 -5.3057 38 1 9.3466 -1.7190 -4.1435 39 1 9.9197 -4.3398 -5.6768 40 1 11.0322 -3.5460 -4.5364 41 1 13.1928 -7.8323 -3.3379 42 1 12.6937 -8.3116 -5.8701 43 1 7.7939 -3.0806 -1.5011 44 1 6.9834 -4.4632 -2.2988 45 1 4.1740 -3.4825 -1.7036 46 1 5.6824 -3.6280 -0.7690 47 1 4.9892 -1.8146 0.7213 48 1 3.6778 -3.0207 0.6450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052101796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:03 Heat of formation + Delta-G solvation = 48.100253 kcal Electronic energy + Delta-G solvation = -28687.025257 eV Core-core repulsion = 24778.094630 eV Total energy + Delta-G solvation = -3908.930626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.96226 -41.17441 -39.88738 -38.17839 -35.87538 -33.77302 -33.43775 -33.08005 -32.19928 -31.52505 -29.89858 -28.56214 -27.34919 -25.33704 -24.28986 -23.85263 -22.49604 -21.89163 -21.67119 -20.95717 -20.23569 -18.90030 -18.76345 -18.21586 -17.65844 -17.12778 -16.66948 -16.00865 -15.89887 -15.83450 -15.72667 -15.36982 -15.32677 -14.92244 -14.75132 -14.67455 -14.46390 -14.16021 -13.96386 -13.80609 -13.72952 -13.58330 -13.46963 -13.04571 -12.81514 -12.53718 -12.44228 -12.15495 -12.08568 -11.82008 -11.67372 -11.51095 -11.40270 -11.00322 -10.97983 -10.86237 -10.71935 -9.65937 -9.42102 -9.34213 -8.90980 -8.16567 -5.48627 1.07399 1.30150 1.43872 1.53641 1.62688 1.78366 2.25399 2.36524 2.42088 2.87801 3.07915 3.29732 3.35327 3.43999 3.71313 3.90512 4.00625 4.08247 4.13181 4.21694 4.33524 4.36872 4.40775 4.43980 4.45474 4.48587 4.52105 4.57915 4.68045 4.68941 4.78385 4.83121 4.84530 4.92636 4.95979 5.01240 5.08995 5.14768 5.23181 5.27344 5.31531 5.81860 5.83195 6.03850 6.08105 6.19643 6.47511 6.59142 6.89382 7.16416 7.22111 7.60534 8.02640 9.03321 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.002130 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.027387 B =13144.428769 C =13547.815465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.038 4.038 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.312 1.312 6 H -0.265 1.265 7 C -0.250 4.250 8 H 0.048 0.952 9 N -0.624 5.624 10 C 0.124 3.876 11 C 0.057 3.943 12 N -0.525 5.525 13 C 0.071 3.929 14 H 0.053 0.947 15 C -0.118 4.118 16 C 0.100 3.900 17 N -0.618 5.618 18 C 0.526 3.474 19 O -0.574 6.574 20 C -0.039 4.039 21 C 0.198 3.802 22 N -0.517 5.517 23 C -0.071 4.071 24 C -0.034 4.034 25 N -0.553 5.553 26 H 0.436 0.564 27 C 0.120 3.880 28 C 0.051 3.949 29 C 0.147 3.853 30 H 0.262 0.738 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.023 0.977 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.174 0.826 42 H 0.216 0.784 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.021 0.979 46 H 0.089 0.911 47 H 0.037 0.963 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.861 -7.099 -20.370 34.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.233 4.233 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.241 1.241 6 H -0.190 1.190 7 C -0.380 4.380 8 H 0.066 0.934 9 N -0.349 5.349 10 C -0.001 4.001 11 C -0.072 4.072 12 N -0.250 5.250 13 C -0.038 4.038 14 H 0.071 0.929 15 C -0.156 4.156 16 C -0.022 4.022 17 N -0.353 5.353 18 C 0.315 3.685 19 O -0.453 6.453 20 C -0.080 4.080 21 C -0.067 4.067 22 N -0.237 5.237 23 C -0.218 4.218 24 C -0.169 4.169 25 N -0.158 5.158 26 H 0.278 0.722 27 C -0.004 4.004 28 C -0.078 4.078 29 C 0.022 3.978 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.042 0.958 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.192 0.808 42 H 0.233 0.767 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.107 0.893 47 H 0.055 0.945 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 27.111 -6.988 -18.892 33.775 hybrid contribution -1.225 -0.368 -0.751 1.483 sum 25.886 -7.357 -19.643 33.318 Atomic orbital electron populations 1.69974 1.07456 1.27289 1.55718 1.25933 0.95910 1.01152 1.00275 0.85837 0.78331 0.79712 0.78023 1.19180 1.24100 1.18953 1.18852 0.86592 0.93594 1.38954 0.93372 1.44550 1.07627 1.33556 1.49160 1.21486 0.96147 0.91940 0.90547 1.22442 0.92708 0.95986 0.96091 1.61947 1.23827 1.18454 1.20740 1.22763 0.93509 0.95441 0.92126 0.92859 1.22727 0.94882 0.96982 1.01009 1.22377 1.00084 0.83601 0.96104 1.48472 1.31455 1.20196 1.35160 1.20518 0.81559 0.81051 0.85405 1.90772 1.72802 1.33393 1.48314 1.20006 0.93830 0.94083 1.00088 1.22709 1.02720 0.97124 0.84153 1.70166 1.11858 1.12901 1.28797 1.22762 1.05604 0.97648 0.95800 1.23290 0.99713 0.96731 0.97182 1.43183 1.38263 1.20748 1.13631 0.72226 1.22018 0.87533 0.98752 0.92052 1.22474 0.97005 0.93266 0.95079 1.21141 0.91559 0.90744 0.94325 0.92918 0.94494 0.92652 0.87719 0.95831 0.87946 0.89532 0.88076 0.88466 0.83156 0.84054 0.80833 0.76710 0.91431 0.92666 0.96087 0.89313 0.94521 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.60 13.97 21.65 0.30 -60.30 16 2 C -0.04 -2.25 5.24 84.86 0.44 -1.80 16 3 Si 0.95 46.47 24.31 68.60 1.67 48.14 16 4 H -0.27 -11.85 6.58 99.48 0.65 -11.20 16 5 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 6 H -0.26 -12.57 6.61 99.48 0.66 -11.92 16 7 C -0.25 -14.45 10.08 84.04 0.85 -13.60 16 8 H 0.05 3.06 8.05 -2.91 -0.02 3.03 16 9 N -0.62 -29.80 2.82 -698.14 -1.97 -31.76 16 10 C 0.12 5.12 4.35 86.35 0.38 5.49 16 11 C 0.06 1.79 5.52 86.38 0.48 2.27 16 12 N -0.52 -15.05 4.53 -861.92 -3.90 -18.95 16 13 C 0.07 1.51 2.72 46.31 0.13 1.64 16 14 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 15 C -0.12 -1.59 5.62 31.78 0.18 -1.41 16 16 C 0.10 0.93 6.49 86.73 0.56 1.49 16 17 N -0.62 -11.37 3.33 -811.80 -2.70 -14.07 16 18 C 0.53 11.57 7.84 87.66 0.69 12.26 16 19 O -0.57 -19.51 15.81 -3.02 -0.05 -19.56 16 20 C -0.04 -0.46 5.52 29.10 0.16 -0.30 16 21 C 0.20 3.66 6.96 138.13 0.96 4.62 16 22 N -0.52 -13.73 10.58 -188.13 -1.99 -15.72 16 23 C -0.07 -1.45 11.87 83.52 0.99 -0.46 16 24 C -0.03 -0.43 12.04 83.09 1.00 0.57 16 25 N -0.55 -6.18 6.15 -186.27 -1.15 -7.32 16 26 H 0.44 1.14 8.96 -92.71 -0.83 0.31 16 27 C 0.12 2.80 5.03 86.85 0.44 3.24 16 28 C 0.05 1.66 5.42 86.38 0.47 2.13 16 29 C 0.15 5.89 6.69 86.35 0.58 6.47 16 30 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 31 H 0.04 1.51 6.94 -2.39 -0.02 1.50 16 32 H 0.06 2.50 4.61 -2.38 -0.01 2.49 16 33 H 0.10 2.53 7.11 -2.38 -0.02 2.51 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.10 1.01 7.97 -2.39 -0.02 0.99 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 38 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.22 0.77 8.06 -2.91 -0.02 0.75 16 43 H 0.07 1.76 8.12 -2.39 -0.02 1.74 16 44 H 0.05 1.51 7.77 -2.39 -0.02 1.49 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.09 2.55 6.60 -2.39 -0.02 2.53 16 47 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.06 2.33 7.95 -2.39 -0.02 2.31 16 Total: -1.00 -88.37 374.96 -1.45 -89.82 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.04 Total: 7.12 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 8.29 Total: 22.61 kcal Atomic # 7 Polarization: -136.73 SS G_CDS: -11.41 Total: -148.13 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.67 Total: 48.14 kcal Total: -88.37 -1.45 -89.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052101796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.924 kcal (2) G-P(sol) polarization free energy of solvation -88.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds