Wall clock time and date at job start Tue Mar 31 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00367 * 2 1 4 4 H 1.48497 * 109.46972 * 240.00294 * 3 2 1 5 5 H 1.48496 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47092 * 120.00135 * 3 2 1 7 7 C 1.38820 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99973 * 197.01677 * 7 2 1 9 9 N 1.36937 * 119.99941 * 17.01363 * 7 2 1 10 10 C 1.47075 * 120.87795 * 206.58803 * 9 7 2 11 11 C 1.53243 * 108.51827 * 231.16573 * 10 9 7 12 12 N 1.46901 * 109.33678 * 306.16711 * 11 10 9 13 13 C 1.46902 * 110.99606 * 187.25722 * 12 11 10 14 14 H 1.09008 * 110.88887 * 303.87961 * 13 12 11 15 15 C 1.55150 * 111.04195 * 67.78884 * 13 12 11 16 16 C 1.54337 * 103.02282 * 153.39373 * 15 13 12 17 17 N 1.47014 * 107.26435 * 338.14205 * 16 15 13 18 18 C 1.34782 * 125.64850 * 178.85563 * 17 16 15 19 19 O 1.21280 * 119.99926 * 179.69102 * 18 17 16 20 20 C 1.50701 * 119.99574 * 359.40660 * 18 17 16 21 21 N 1.46504 * 109.46858 * 180.28058 * 20 18 17 22 22 C 1.36878 * 126.39459 * 90.00347 * 21 20 18 23 23 C 1.34679 * 106.81387 * 180.02562 * 22 21 20 24 24 N 1.34120 * 108.01932 * 0.02562 * 23 22 21 25 25 C 1.30497 * 109.25865 * 359.72475 * 24 23 22 26 26 C 1.47429 * 108.70485 * 358.58229 * 17 16 15 27 27 C 1.46896 * 111.26669 * 63.10989 * 12 11 10 28 28 C 1.47079 * 120.88176 * 26.56796 * 9 7 2 29 29 H 0.97006 * 119.99666 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.62924 * 111.45350 * 10 9 7 31 31 H 1.09000 * 109.79177 * 350.96840 * 10 9 7 32 32 H 1.09004 * 109.49008 * 186.21152 * 11 10 9 33 33 H 1.09000 * 109.49502 * 66.13469 * 11 10 9 34 34 H 1.09001 * 110.72073 * 271.95554 * 15 13 12 35 35 H 1.09004 * 110.71878 * 35.04659 * 15 13 12 36 36 H 1.09002 * 109.98837 * 218.66603 * 16 15 13 37 37 H 1.08997 * 109.77727 * 97.50030 * 16 15 13 38 38 H 1.08996 * 109.47559 * 300.28148 * 20 18 17 39 39 H 1.09003 * 109.47020 * 60.28490 * 20 18 17 40 40 H 1.07997 * 126.59452 * 359.96797 * 22 21 20 41 41 H 1.07994 * 125.98631 * 180.02562 * 23 22 21 42 42 H 1.08000 * 125.65053 * 180.29262 * 25 24 23 43 43 H 1.08998 * 110.36551 * 143.19554 * 26 17 16 44 44 H 1.09002 * 110.36827 * 265.51924 * 26 17 16 45 45 H 1.09001 * 109.49438 * 56.85328 * 27 12 11 46 46 H 1.09005 * 109.48876 * 176.93188 * 27 12 11 47 47 H 1.09001 * 109.62539 * 248.54357 * 28 9 7 48 48 H 1.09004 * 109.62987 * 9.12253 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0547 -1.2229 0.2732 9 7 1.3704 -2.3620 -0.3481 10 6 1.8307 -3.6611 0.1655 11 6 2.0021 -4.6193 -1.0181 12 7 0.7544 -4.6641 -1.7922 13 6 0.8179 -5.6984 -2.8335 14 1 1.6770 -5.5411 -3.4857 15 6 0.8473 -7.1178 -2.2077 16 6 0.2336 -7.9993 -3.3159 17 7 -0.5612 -7.1184 -4.1841 18 6 -1.2402 -7.5031 -5.2830 19 8 -1.8695 -6.6877 -5.9233 20 6 -1.2123 -8.9452 -5.7195 21 7 -2.0161 -9.1034 -6.9341 22 6 -1.5712 -8.9874 -8.2233 23 6 -2.6324 -9.2073 -9.0229 24 7 -3.6962 -9.4502 -8.2431 25 6 -3.3335 -9.3951 -6.9908 26 6 -0.4977 -5.7457 -3.6500 27 6 0.4398 -3.3517 -2.3723 28 6 0.2044 -2.3416 -1.2444 29 1 -0.4850 0.8401 0.0004 30 1 1.0918 -4.0635 0.8584 31 1 2.7847 -3.5382 0.6782 32 1 2.2360 -5.6172 -0.6472 33 1 2.8135 -4.2683 -1.6557 34 1 1.8712 -7.4229 -1.9917 35 1 0.2372 -7.1541 -1.3051 36 1 -0.4083 -8.7611 -2.8734 37 1 1.0280 -8.4712 -3.8941 38 1 -0.1839 -9.2434 -5.9231 39 1 -1.6226 -9.5724 -4.9280 40 1 -0.5632 -8.7620 -8.5387 41 1 -2.6275 -9.1908 -10.1027 42 1 -3.9801 -9.5542 -6.1406 43 1 -0.4646 -5.0227 -4.4650 44 1 -1.3530 -5.5505 -3.0030 45 1 1.2729 -3.0184 -2.9911 46 1 -0.4593 -3.4304 -2.9836 47 1 -0.6908 -2.6172 -0.6869 48 1 0.0840 -1.3435 -1.6658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052123866.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:50 Heat of formation + Delta-G solvation = 83.028103 kcal Electronic energy + Delta-G solvation = -28698.523900 eV Core-core repulsion = 24791.107858 eV Total energy + Delta-G solvation = -3907.416041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.31532 -40.38625 -38.64905 -36.96353 -34.39780 -34.17039 -31.79633 -30.90068 -29.97208 -29.69882 -29.15002 -27.76191 -25.88305 -23.92661 -22.96296 -22.35125 -21.58422 -21.44414 -20.54533 -19.74748 -19.22226 -17.88438 -17.67921 -17.16197 -16.41460 -15.91679 -15.36932 -14.93892 -14.65207 -14.52010 -14.38025 -14.12499 -14.06448 -14.04061 -13.59176 -13.50247 -13.42006 -13.20185 -13.09515 -12.90537 -12.53598 -12.49921 -11.92573 -11.51832 -11.32893 -11.12476 -11.01455 -10.76436 -10.65274 -10.52262 -10.36902 -10.22125 -10.10131 -9.79515 -9.76223 -9.66258 -9.01545 -8.72162 -8.54911 -8.00438 -6.72246 -5.82185 -3.23681 1.68148 2.12200 2.26689 2.73593 3.00878 3.35614 3.42046 3.42598 3.88240 4.07816 4.13969 4.38598 4.43936 4.46286 4.47082 4.49914 4.58950 4.73955 5.03984 5.12786 5.20816 5.21849 5.35173 5.36990 5.45172 5.56961 5.66272 5.72742 5.78422 5.80025 5.83151 5.95351 6.02257 6.06235 6.15516 6.24867 6.44388 6.49420 6.60750 6.84015 6.85206 7.07363 7.16810 7.45182 7.54946 7.62704 7.68658 7.76213 7.85270 8.39087 9.16792 9.80103 10.38019 11.26641 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.002164 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.127949 B =12936.095025 C =13667.824760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.520 5.520 13 C 0.069 3.931 14 H 0.051 0.949 15 C -0.123 4.123 16 C 0.098 3.902 17 N -0.614 5.614 18 C 0.508 3.492 19 O -0.519 6.519 20 C 0.093 3.907 21 N -0.447 5.447 22 C -0.047 4.047 23 C -0.029 4.029 24 N -0.494 5.494 25 C 0.193 3.807 26 C 0.116 3.884 27 C 0.032 3.968 28 C 0.179 3.821 29 H 0.255 0.745 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.203 0.797 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.026 0.974 46 H 0.063 0.937 47 H 0.027 0.973 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 -22.360 -9.286 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.084 4.084 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.069 0.931 15 C -0.161 4.161 16 C -0.026 4.026 17 N -0.349 5.349 18 C 0.294 3.706 19 O -0.394 6.394 20 C -0.034 4.034 21 N -0.131 5.131 22 C -0.179 4.179 23 C -0.176 4.176 24 N -0.212 5.212 25 C -0.089 4.089 26 C -0.007 4.007 27 C -0.097 4.097 28 C 0.052 3.948 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.189 0.811 41 H 0.187 0.813 42 H 0.219 0.781 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.045 0.955 46 H 0.081 0.919 47 H 0.045 0.955 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.117 -22.038 -9.541 24.015 hybrid contribution 2.040 1.323 -0.149 2.436 sum 1.923 -20.715 -9.691 22.951 Atomic orbital electron populations 1.70012 1.05209 1.25687 1.53782 1.25032 0.95317 0.98395 1.00926 0.86364 0.78908 0.83374 0.78083 1.21107 1.21578 1.20879 1.19133 0.92549 0.84795 1.41925 0.91689 1.44108 1.34135 1.01250 1.52340 1.20960 0.97848 0.86492 0.92467 1.22639 0.89284 0.99528 0.96941 1.62048 1.34569 1.05510 1.22440 1.22738 0.95696 0.92770 0.92886 0.93122 1.22686 1.01823 0.93543 0.98013 1.22175 0.94646 0.93667 0.92069 1.48433 1.49580 1.10971 1.25961 1.20340 0.79710 0.90497 0.80025 1.90827 1.41660 1.53580 1.53318 1.21634 0.98702 0.95472 0.87611 1.45021 1.09905 1.52325 1.05802 1.22681 1.01577 1.10707 0.82964 1.22263 0.88620 1.06982 0.99728 1.70287 1.29795 1.20376 1.00732 1.24973 0.82570 1.04022 0.97341 1.22313 0.98614 0.82246 0.97478 1.22976 0.98798 0.89073 0.98871 1.20865 0.88987 0.96582 0.88320 0.93492 0.95658 0.92573 0.91862 0.95349 0.90007 0.88994 0.90839 0.91249 0.86104 0.85816 0.81081 0.81333 0.78063 0.90402 0.89775 0.95521 0.91899 0.95467 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.15 55.49 0.62 -25.32 16 2 C 0.00 0.05 4.94 -17.43 -0.09 -0.03 16 3 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.86 9.63 -15.06 -0.15 -7.01 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.60 3.04 -172.02 -0.52 -15.12 16 10 C 0.15 2.98 6.69 -3.60 -0.02 2.96 16 11 C 0.05 0.73 5.52 -3.70 -0.02 0.71 16 12 N -0.52 -8.20 4.53 -223.78 -1.01 -9.22 16 13 C 0.07 0.83 2.72 -65.57 -0.18 0.65 16 14 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 15 C -0.12 -1.02 5.62 -24.89 -0.14 -1.16 16 16 C 0.10 0.60 6.49 -3.06 -0.02 0.58 16 17 N -0.61 -5.94 3.33 -170.51 -0.57 -6.51 16 18 C 0.51 5.37 7.92 -10.98 -0.09 5.29 16 19 O -0.52 -8.18 16.69 5.56 0.09 -8.09 16 20 C 0.09 0.58 5.82 -5.19 -0.03 0.54 16 21 N -0.45 -4.13 2.24 -119.86 -0.27 -4.39 16 22 C -0.05 -0.45 11.58 -16.56 -0.19 -0.64 16 23 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 24 N -0.49 -6.30 11.25 -14.67 -0.17 -6.47 16 25 C 0.19 2.01 12.56 -90.38 -1.14 0.87 16 26 C 0.12 1.43 5.03 -2.53 -0.01 1.42 16 27 C 0.03 0.59 5.42 -3.71 -0.02 0.57 16 28 C 0.18 4.18 5.42 -3.61 -0.02 4.16 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.08 7.96 -51.93 -0.41 0.67 16 32 H 0.06 0.82 7.11 -51.93 -0.37 0.45 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.58 7.97 -51.93 -0.41 0.16 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 42 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.08 1.09 7.77 -51.93 -0.40 0.69 16 44 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 1.08 6.60 -51.93 -0.34 0.73 16 47 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.09 2.35 6.12 -51.93 -0.32 2.03 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -35.31 383.79 -11.12 -46.43 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.73 Total: -1.92 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -2.32 Total: 8.38 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -1.92 Total: -67.03 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.09 Total: -8.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.31 -11.12 -46.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052123866.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.462 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds