Wall clock time and date at job start Tue Mar 31 2020 18:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00367 * 2 1 4 4 H 1.48497 * 109.46972 * 240.00294 * 3 2 1 5 5 H 1.48496 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47092 * 120.00135 * 3 2 1 7 7 C 1.38820 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99973 * 197.01677 * 7 2 1 9 9 N 1.36937 * 119.99941 * 17.01363 * 7 2 1 10 10 C 1.47075 * 120.87795 * 206.58803 * 9 7 2 11 11 C 1.53243 * 108.51827 * 231.16573 * 10 9 7 12 12 N 1.46901 * 109.33678 * 306.16711 * 11 10 9 13 13 C 1.46902 * 110.99606 * 187.25722 * 12 11 10 14 14 H 1.09008 * 110.88887 * 303.87961 * 13 12 11 15 15 C 1.55150 * 111.04195 * 67.78884 * 13 12 11 16 16 C 1.54337 * 103.02282 * 153.39373 * 15 13 12 17 17 N 1.47014 * 107.26435 * 338.14205 * 16 15 13 18 18 C 1.34782 * 125.64850 * 178.85563 * 17 16 15 19 19 O 1.21280 * 119.99926 * 179.69102 * 18 17 16 20 20 C 1.50701 * 119.99574 * 359.40660 * 18 17 16 21 21 N 1.46504 * 109.46858 * 180.28058 * 20 18 17 22 22 C 1.36878 * 126.39459 * 90.00347 * 21 20 18 23 23 C 1.34679 * 106.81387 * 180.02562 * 22 21 20 24 24 N 1.34120 * 108.01932 * 0.02562 * 23 22 21 25 25 C 1.30497 * 109.25865 * 359.72475 * 24 23 22 26 26 C 1.47429 * 108.70485 * 358.58229 * 17 16 15 27 27 C 1.46896 * 111.26669 * 63.10989 * 12 11 10 28 28 C 1.47079 * 120.88176 * 26.56796 * 9 7 2 29 29 H 0.97006 * 119.99666 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.62924 * 111.45350 * 10 9 7 31 31 H 1.09000 * 109.79177 * 350.96840 * 10 9 7 32 32 H 1.09004 * 109.49008 * 186.21152 * 11 10 9 33 33 H 1.09000 * 109.49502 * 66.13469 * 11 10 9 34 34 H 1.09001 * 110.72073 * 271.95554 * 15 13 12 35 35 H 1.09004 * 110.71878 * 35.04659 * 15 13 12 36 36 H 1.09002 * 109.98837 * 218.66603 * 16 15 13 37 37 H 1.08997 * 109.77727 * 97.50030 * 16 15 13 38 38 H 1.08996 * 109.47559 * 300.28148 * 20 18 17 39 39 H 1.09003 * 109.47020 * 60.28490 * 20 18 17 40 40 H 1.07997 * 126.59452 * 359.96797 * 22 21 20 41 41 H 1.07994 * 125.98631 * 180.02562 * 23 22 21 42 42 H 1.08000 * 125.65053 * 180.29262 * 25 24 23 43 43 H 1.08998 * 110.36551 * 143.19554 * 26 17 16 44 44 H 1.09002 * 110.36827 * 265.51924 * 26 17 16 45 45 H 1.09001 * 109.49438 * 56.85328 * 27 12 11 46 46 H 1.09005 * 109.48876 * 176.93188 * 27 12 11 47 47 H 1.09001 * 109.62539 * 248.54357 * 28 9 7 48 48 H 1.09004 * 109.62987 * 9.12253 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0547 -1.2229 0.2732 9 7 1.3704 -2.3620 -0.3481 10 6 1.8307 -3.6611 0.1655 11 6 2.0021 -4.6193 -1.0181 12 7 0.7544 -4.6641 -1.7922 13 6 0.8179 -5.6984 -2.8335 14 1 1.6770 -5.5411 -3.4857 15 6 0.8473 -7.1178 -2.2077 16 6 0.2336 -7.9993 -3.3159 17 7 -0.5612 -7.1184 -4.1841 18 6 -1.2402 -7.5031 -5.2830 19 8 -1.8695 -6.6877 -5.9233 20 6 -1.2123 -8.9452 -5.7195 21 7 -2.0161 -9.1034 -6.9341 22 6 -1.5712 -8.9874 -8.2233 23 6 -2.6324 -9.2073 -9.0229 24 7 -3.6962 -9.4502 -8.2431 25 6 -3.3335 -9.3951 -6.9908 26 6 -0.4977 -5.7457 -3.6500 27 6 0.4398 -3.3517 -2.3723 28 6 0.2044 -2.3416 -1.2444 29 1 -0.4850 0.8401 0.0004 30 1 1.0918 -4.0635 0.8584 31 1 2.7847 -3.5382 0.6782 32 1 2.2360 -5.6172 -0.6472 33 1 2.8135 -4.2683 -1.6557 34 1 1.8712 -7.4229 -1.9917 35 1 0.2372 -7.1541 -1.3051 36 1 -0.4083 -8.7611 -2.8734 37 1 1.0280 -8.4712 -3.8941 38 1 -0.1839 -9.2434 -5.9231 39 1 -1.6226 -9.5724 -4.9280 40 1 -0.5632 -8.7620 -8.5387 41 1 -2.6275 -9.1908 -10.1027 42 1 -3.9801 -9.5542 -6.1406 43 1 -0.4646 -5.0227 -4.4650 44 1 -1.3530 -5.5505 -3.0030 45 1 1.2729 -3.0184 -2.9911 46 1 -0.4593 -3.4304 -2.9836 47 1 -0.6908 -2.6172 -0.6869 48 1 0.0840 -1.3435 -1.6658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052123866.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:49 Heat of formation + Delta-G solvation = 59.225830 kcal Electronic energy + Delta-G solvation = -28699.556044 eV Core-core repulsion = 24791.107858 eV Total energy + Delta-G solvation = -3908.448185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.00486 -41.23576 -39.84470 -38.16622 -35.86276 -34.96844 -33.40738 -32.13186 -31.42812 -30.45918 -30.03339 -28.76087 -27.36672 -25.11040 -24.52561 -23.62276 -22.29963 -22.18185 -21.59585 -20.83182 -20.47122 -18.85488 -18.55316 -18.36965 -17.57818 -16.85003 -16.64918 -16.19245 -15.91696 -15.55543 -15.39544 -15.32100 -15.14323 -15.02675 -14.91403 -14.77549 -14.55956 -14.14310 -14.02640 -13.79262 -13.67574 -13.23508 -13.19061 -13.11081 -12.68072 -12.58386 -12.51549 -12.27031 -12.04529 -11.88588 -11.77184 -11.53000 -11.42976 -11.37741 -10.98706 -10.59943 -10.52083 -9.78840 -9.43688 -9.34041 -8.70261 -7.89487 -5.33843 0.97444 1.38954 1.44785 1.47287 1.54030 1.64441 2.05898 2.24558 2.49106 2.93341 3.23882 3.26335 3.62753 3.65257 3.68884 3.77848 3.87220 3.99747 4.06016 4.13056 4.20135 4.31607 4.34177 4.37499 4.52253 4.57497 4.58260 4.64355 4.68330 4.76278 4.79130 4.85712 4.89903 4.96260 5.08439 5.11785 5.21367 5.26709 5.29650 5.36681 5.59582 5.65264 5.80899 6.09345 6.18406 6.23898 6.35338 6.40375 6.93853 7.11313 7.12964 7.82921 8.36306 9.17153 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.002164 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.127949 B =12936.095025 C =13667.824760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.054 4.054 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.263 4.263 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.142 3.858 11 C 0.059 3.941 12 N -0.526 5.526 13 C 0.070 3.930 14 H 0.053 0.947 15 C -0.115 4.115 16 C 0.096 3.904 17 N -0.610 5.610 18 C 0.505 3.495 19 O -0.584 6.584 20 C 0.100 3.900 21 N -0.449 5.449 22 C -0.045 4.045 23 C -0.060 4.060 24 N -0.539 5.539 25 C 0.183 3.817 26 C 0.118 3.882 27 C 0.051 3.949 28 C 0.187 3.813 29 H 0.250 0.750 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.022 0.978 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.198 0.802 41 H 0.179 0.821 42 H 0.226 0.774 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.017 0.983 46 H 0.071 0.929 47 H -0.002 1.002 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.887 -25.700 -8.997 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.198 1.198 7 C -0.393 4.393 8 H 0.087 0.913 9 N -0.339 5.339 10 C 0.017 3.983 11 C -0.070 4.070 12 N -0.252 5.252 13 C -0.039 4.039 14 H 0.071 0.929 15 C -0.153 4.153 16 C -0.025 4.025 17 N -0.344 5.344 18 C 0.293 3.707 19 O -0.463 6.463 20 C -0.025 4.025 21 N -0.131 5.131 22 C -0.178 4.178 23 C -0.206 4.206 24 N -0.257 5.257 25 C -0.100 4.100 26 C -0.006 4.006 27 C -0.078 4.078 28 C 0.061 3.939 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.041 0.959 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.178 0.822 39 H 0.182 0.818 40 H 0.215 0.785 41 H 0.196 0.804 42 H 0.242 0.758 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.035 0.965 46 H 0.089 0.911 47 H 0.017 0.983 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.353 -25.447 -9.221 27.169 hybrid contribution 1.288 2.333 -0.183 2.671 sum 3.642 -23.114 -9.404 25.219 Atomic orbital electron populations 1.70182 1.06690 1.25888 1.55504 1.25813 0.96064 1.01585 1.01457 0.85337 0.77538 0.79211 0.78352 1.20578 1.22198 1.19840 1.19504 0.92933 0.85992 1.40838 0.91252 1.44399 1.34099 1.02401 1.52997 1.21166 0.97605 0.85310 0.94242 1.22477 0.88917 1.00478 0.95135 1.61956 1.34776 1.04584 1.23856 1.22771 0.95234 0.93704 0.92205 0.92923 1.22720 1.03567 0.90723 0.98326 1.22496 0.95702 0.92999 0.91274 1.48491 1.49570 1.10196 1.26135 1.21184 0.78340 0.91916 0.79251 1.90810 1.44439 1.55730 1.55367 1.21968 1.00759 0.92383 0.87439 1.45202 1.09801 1.51505 1.06626 1.23125 1.02309 1.09238 0.83096 1.22640 0.89044 1.08222 1.00691 1.70224 1.31272 1.22013 1.02227 1.25473 0.83566 1.03526 0.97409 1.22041 0.98263 0.83902 0.96378 1.22550 0.98881 0.89803 0.96596 1.20573 0.87999 0.96160 0.89212 0.94145 0.96365 0.91942 0.87495 0.95922 0.87492 0.89605 0.87631 0.87670 0.82243 0.81843 0.78493 0.80353 0.75751 0.93145 0.91714 0.96485 0.91113 0.98344 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.13 11.15 21.65 0.24 -55.89 16 2 C -0.05 -3.04 4.94 84.86 0.42 -2.62 16 3 Si 0.97 45.03 29.59 68.60 2.03 47.06 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.26 -14.40 9.63 84.04 0.81 -13.59 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 9 N -0.61 -30.82 3.04 -698.14 -2.12 -32.94 16 10 C 0.14 5.59 6.69 86.35 0.58 6.17 16 11 C 0.06 1.75 5.52 86.38 0.48 2.22 16 12 N -0.53 -15.98 4.53 -861.89 -3.90 -19.88 16 13 C 0.07 1.51 2.72 46.31 0.13 1.64 16 14 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 15 C -0.12 -1.37 5.62 31.78 0.18 -1.19 16 16 C 0.10 0.64 6.49 86.74 0.56 1.20 16 17 N -0.61 -9.93 3.33 -811.76 -2.70 -12.63 16 18 C 0.50 9.39 7.92 87.66 0.69 10.09 16 19 O -0.58 -18.33 16.69 -3.03 -0.05 -18.38 16 20 C 0.10 0.78 5.82 85.63 0.50 1.28 16 21 N -0.45 -7.13 2.24 -533.14 -1.19 -8.32 16 22 C -0.05 -0.78 11.58 83.09 0.96 0.19 16 23 C -0.06 -1.29 11.87 83.53 0.99 -0.30 16 24 N -0.54 -13.71 11.25 -200.32 -2.25 -15.96 16 25 C 0.18 3.56 12.56 180.26 2.26 5.83 16 26 C 0.12 2.82 5.03 86.86 0.44 3.25 16 27 C 0.05 1.95 5.42 86.38 0.47 2.42 16 28 C 0.19 9.19 5.42 86.35 0.47 9.66 16 29 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 2.34 7.96 -2.39 -0.02 2.32 16 32 H 0.11 2.29 7.11 -2.38 -0.02 2.27 16 33 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.81 7.97 -2.39 -0.02 0.79 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.16 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.20 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 42 H 0.23 2.83 8.06 -2.91 -0.02 2.80 16 43 H 0.05 1.46 7.77 -2.39 -0.02 1.45 16 44 H 0.06 1.79 8.12 -2.39 -0.02 1.77 16 45 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.07 2.54 6.60 -2.38 -0.02 2.53 16 47 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.05 2.96 6.12 -2.39 -0.01 2.94 16 Total: -1.00 -84.26 383.79 0.92 -83.34 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.94 Total: 7.37 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 9.93 Total: 26.24 kcal Atomic # 7 Polarization: -133.70 SS G_CDS: -11.93 Total: -145.63 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -84.26 0.92 -83.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052123866.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.564 kcal (2) G-P(sol) polarization free energy of solvation -84.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds