Wall clock time and date at job start Tue Mar 31 2020 18:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00184 * 2 1 4 4 H 1.48492 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46502 * 299.99674 * 3 2 1 6 6 H 1.48494 * 109.46862 * 59.99325 * 3 2 1 7 7 C 1.38821 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99708 * 194.69118 * 7 2 1 9 9 N 1.36932 * 119.99931 * 14.69418 * 7 2 1 10 10 C 1.47077 * 120.88020 * 208.77250 * 9 7 2 11 11 C 1.53242 * 108.52183 * 231.20654 * 10 9 7 12 12 N 1.46896 * 109.33991 * 306.17194 * 11 10 9 13 13 C 1.46904 * 111.00159 * 187.25282 * 12 11 10 14 14 H 1.08996 * 110.88398 * 295.84709 * 13 12 11 15 15 C 1.55152 * 111.03966 * 171.93856 * 13 12 11 16 16 C 1.54321 * 102.86498 * 206.21592 * 15 13 12 17 17 N 1.47026 * 107.27285 * 22.52265 * 16 15 13 18 18 C 1.34777 * 125.64732 * 180.96737 * 17 16 15 19 19 O 1.21275 * 120.00181 * 179.69628 * 18 17 16 20 20 C 1.50704 * 119.99818 * 359.69459 * 18 17 16 21 21 N 1.46496 * 109.46822 * 179.97438 * 20 18 17 22 22 C 1.36885 * 126.39742 * 269.71189 * 21 20 18 23 23 C 1.34672 * 106.81716 * 179.84408 * 22 21 20 24 24 N 1.34117 * 108.01834 * 0.42475 * 23 22 21 25 25 C 1.30504 * 109.25981 * 359.73300 * 24 23 22 26 26 C 1.47423 * 108.70392 * 0.70740 * 17 16 15 27 27 C 1.46895 * 111.27002 * 63.10343 * 12 11 10 28 28 C 1.47081 * 120.88396 * 28.79787 * 9 7 2 29 29 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.63037 * 111.49657 * 10 9 7 31 31 H 1.08994 * 109.63039 * 350.91779 * 10 9 7 32 32 H 1.09000 * 109.49206 * 186.20866 * 11 10 9 33 33 H 1.09000 * 109.51401 * 66.14518 * 11 10 9 34 34 H 1.09000 * 110.71750 * 324.77277 * 15 13 12 35 35 H 1.08997 * 110.72168 * 87.86576 * 15 13 12 36 36 H 1.08997 * 109.98273 * 263.05306 * 16 15 13 37 37 H 1.08994 * 109.77393 * 141.88228 * 16 15 13 38 38 H 1.09000 * 109.47001 * 60.00088 * 20 18 17 39 39 H 1.08997 * 109.47048 * 300.00107 * 20 18 17 40 40 H 1.08006 * 126.59179 * 359.97438 * 22 21 20 41 41 H 1.07997 * 125.98788 * 180.19097 * 23 22 21 42 42 H 1.07999 * 125.64881 * 180.02562 * 25 24 23 43 43 H 1.09005 * 110.36986 * 94.93848 * 26 17 16 44 44 H 1.08998 * 110.36798 * 217.25370 * 26 17 16 45 45 H 1.08998 * 109.49570 * 56.85905 * 27 12 11 46 46 H 1.09004 * 109.49431 * 176.93842 * 27 12 11 47 47 H 1.09005 * 109.62666 * 248.50437 * 28 9 7 48 48 H 1.08999 * 109.62650 * 9.07695 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0638 -1.2174 0.2378 9 7 1.3591 -2.3688 -0.2997 10 6 1.8092 -3.6510 0.2630 11 6 1.9697 -4.6559 -0.8826 12 7 0.7201 -4.7199 -1.6522 13 6 0.7722 -5.7943 -2.6527 14 1 1.5437 -5.5955 -3.3965 15 6 -0.6109 -5.9961 -3.3261 16 6 -0.5660 -7.4742 -3.7671 17 7 0.4323 -8.1506 -2.9260 18 6 0.7810 -9.4497 -3.0115 19 8 1.6246 -9.9015 -2.2665 20 6 0.1225 -10.3409 -4.0330 21 7 0.6705 -11.6952 -3.9250 22 6 1.7542 -12.1890 -4.5999 23 6 1.9116 -13.4663 -4.2029 24 7 0.9447 -13.7475 -3.3171 25 6 0.1974 -12.6914 -3.1457 26 6 0.9934 -7.1711 -1.9778 27 6 0.4156 -3.4283 -2.2823 28 6 0.1915 -2.3731 -1.1941 29 1 -0.4850 0.8400 -0.0004 30 1 1.0684 -4.0197 0.9725 31 1 2.7661 -3.5140 0.7666 32 1 2.1958 -5.6407 -0.4737 33 1 2.7828 -4.3376 -1.5351 34 1 -1.4161 -5.8274 -2.6111 35 1 -0.7193 -5.3389 -4.1889 36 1 -0.2744 -7.5415 -4.8152 37 1 -1.5444 -7.9322 -3.6221 38 1 0.3134 -9.9507 -5.0326 39 1 -0.9521 -10.3680 -3.8526 40 1 2.3668 -11.6561 -5.3122 41 1 2.6794 -14.1461 -4.5416 42 1 -0.6574 -12.6249 -2.4890 43 1 0.4629 -7.2169 -1.0267 44 1 2.0575 -7.3540 -1.8287 45 1 1.2502 -3.1266 -2.9152 46 1 -0.4854 -3.5227 -2.8885 47 1 -0.7049 -2.6189 -0.6246 48 1 0.0788 -1.3912 -1.6537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052123867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:53 Heat of formation + Delta-G solvation = 81.908731 kcal Electronic energy + Delta-G solvation = -28645.893835 eV Core-core repulsion = 24738.429254 eV Total energy + Delta-G solvation = -3907.464581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.33201 -40.40068 -38.65807 -36.96921 -34.40812 -34.17852 -31.86249 -30.54044 -30.35633 -29.74413 -29.05831 -27.75403 -25.89617 -23.95590 -22.92744 -22.36474 -21.60011 -21.45317 -20.54939 -19.76420 -19.23161 -17.90263 -17.69357 -17.17265 -16.40745 -15.92101 -15.36913 -15.04561 -14.63199 -14.51961 -14.30204 -14.15918 -14.06996 -14.06036 -13.58838 -13.45575 -13.44018 -13.32610 -13.07845 -12.91163 -12.54761 -12.50075 -11.98551 -11.41031 -11.33317 -11.11367 -11.03952 -10.81402 -10.66848 -10.48895 -10.35963 -10.23858 -10.11576 -9.82411 -9.78607 -9.65208 -9.03210 -8.73873 -8.57341 -8.00837 -6.69679 -5.83699 -3.27402 1.66682 2.10101 2.24900 2.72224 2.99175 3.32723 3.40940 3.42930 3.87053 4.07944 4.13035 4.38297 4.43730 4.45354 4.46051 4.48304 4.57495 4.75262 5.03520 5.13077 5.19188 5.21744 5.34665 5.37132 5.43508 5.56054 5.66754 5.71602 5.75863 5.80927 5.85428 5.93775 6.04428 6.06321 6.14410 6.24471 6.45348 6.47727 6.60877 6.83192 6.86548 7.05799 7.15514 7.45064 7.53944 7.61256 7.66455 7.75889 7.83561 8.39301 9.16376 9.78563 10.37778 11.25193 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.037382 B = 0.002015 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.840392 B =13889.962762 C =14237.483946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.041 3.959 12 N -0.520 5.520 13 C 0.069 3.931 14 H 0.051 0.949 15 C -0.123 4.123 16 C 0.097 3.903 17 N -0.614 5.614 18 C 0.509 3.491 19 O -0.520 6.520 20 C 0.092 3.908 21 N -0.447 5.447 22 C -0.048 4.048 23 C -0.029 4.029 24 N -0.494 5.494 25 C 0.193 3.807 26 C 0.117 3.883 27 C 0.036 3.964 28 C 0.179 3.821 29 H 0.254 0.746 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.203 0.797 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.025 0.975 46 H 0.063 0.937 47 H 0.027 0.973 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 -18.652 -13.103 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.088 4.088 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.069 0.931 15 C -0.161 4.161 16 C -0.026 4.026 17 N -0.349 5.349 18 C 0.295 3.705 19 O -0.396 6.396 20 C -0.035 4.035 21 N -0.130 5.130 22 C -0.180 4.180 23 C -0.176 4.176 24 N -0.212 5.212 25 C -0.089 4.089 26 C -0.006 4.006 27 C -0.093 4.093 28 C 0.053 3.947 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.189 0.811 41 H 0.187 0.813 42 H 0.219 0.781 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.044 0.956 46 H 0.081 0.919 47 H 0.045 0.955 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.581 -19.556 -11.978 23.210 hybrid contribution 1.148 2.056 -1.023 2.567 sum -2.433 -17.500 -13.001 21.937 Atomic orbital electron populations 1.70011 1.05202 1.25399 1.54199 1.25094 0.95369 0.98399 1.00771 0.86213 0.79315 0.83895 0.77297 1.20294 1.21580 1.21642 1.19222 0.91837 0.84379 1.42745 0.91694 1.44101 1.33869 1.02070 1.51816 1.20978 0.97972 0.86376 0.92458 1.22685 0.89400 0.99687 0.97049 1.62031 1.34564 1.04471 1.23506 1.22746 0.96363 0.91425 0.93591 0.93145 1.22693 0.98576 0.93437 1.01415 1.22184 0.91901 0.93928 0.94560 1.48433 1.41116 1.08309 1.37045 1.20334 0.83454 0.81369 0.85351 1.90817 1.32261 1.73284 1.43193 1.21637 1.00176 0.80744 1.00901 1.45019 1.24295 1.09972 1.33747 1.22684 0.94043 0.97110 1.04119 1.22261 1.00574 0.94952 0.99796 1.70290 1.06442 1.26834 1.17651 1.24972 1.02020 0.83337 0.98564 1.22295 0.99561 0.86045 0.92676 1.22928 0.98722 0.89345 0.98273 1.20846 0.89108 0.95807 0.88915 0.93640 0.95566 0.92527 0.91879 0.95279 0.88882 0.89874 0.91190 0.90808 0.86087 0.85787 0.81080 0.81334 0.78067 0.89837 0.90549 0.95631 0.91898 0.95459 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 11.17 55.49 0.62 -24.99 16 2 C 0.00 0.06 4.98 -17.43 -0.09 -0.03 16 3 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.79 9.62 -15.06 -0.14 -6.94 16 8 H 0.07 1.73 7.87 -52.49 -0.41 1.32 16 9 N -0.60 -14.58 3.03 -172.01 -0.52 -15.11 16 10 C 0.15 3.07 6.69 -3.60 -0.02 3.04 16 11 C 0.04 0.69 5.46 -3.70 -0.02 0.67 16 12 N -0.52 -8.19 4.53 -223.79 -1.01 -9.21 16 13 C 0.07 0.82 2.71 -65.56 -0.18 0.64 16 14 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 15 C -0.12 -1.09 5.44 -24.90 -0.14 -1.22 16 16 C 0.10 0.62 6.48 -3.06 -0.02 0.60 16 17 N -0.61 -5.79 3.33 -170.52 -0.57 -6.36 16 18 C 0.51 5.21 7.92 -10.98 -0.09 5.13 16 19 O -0.52 -7.93 16.69 5.56 0.09 -7.84 16 20 C 0.09 0.56 5.82 -5.19 -0.03 0.53 16 21 N -0.45 -4.03 2.24 -119.87 -0.27 -4.29 16 22 C -0.05 -0.44 11.58 -16.56 -0.19 -0.63 16 23 C -0.03 -0.31 11.87 -17.82 -0.21 -0.52 16 24 N -0.49 -6.18 11.25 -14.67 -0.17 -6.35 16 25 C 0.19 1.96 12.56 -90.38 -1.14 0.83 16 26 C 0.12 1.37 5.23 -2.53 -0.01 1.36 16 27 C 0.04 0.64 5.49 -3.71 -0.02 0.62 16 28 C 0.18 4.09 5.39 -3.60 -0.02 4.07 16 29 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.14 7.95 -51.93 -0.41 0.72 16 32 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.20 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.08 1.00 7.74 -51.93 -0.40 0.60 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.95 6.93 -51.93 -0.36 0.59 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 2.22 6.21 -51.93 -0.32 1.90 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -34.97 383.80 -11.11 -46.08 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.73 Total: -2.13 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -2.32 Total: 8.16 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -1.92 Total: -66.30 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.97 -11.11 -46.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052123867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.985 kcal (2) G-P(sol) polarization free energy of solvation -34.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds