Wall clock time and date at job start Tue Mar 31 2020 18:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00184 * 2 1 4 4 H 1.48492 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46502 * 299.99674 * 3 2 1 6 6 H 1.48494 * 109.46862 * 59.99325 * 3 2 1 7 7 C 1.38821 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99708 * 194.69118 * 7 2 1 9 9 N 1.36932 * 119.99931 * 14.69418 * 7 2 1 10 10 C 1.47077 * 120.88020 * 208.77250 * 9 7 2 11 11 C 1.53242 * 108.52183 * 231.20654 * 10 9 7 12 12 N 1.46896 * 109.33991 * 306.17194 * 11 10 9 13 13 C 1.46904 * 111.00159 * 187.25282 * 12 11 10 14 14 H 1.08996 * 110.88398 * 295.84709 * 13 12 11 15 15 C 1.55152 * 111.03966 * 171.93856 * 13 12 11 16 16 C 1.54321 * 102.86498 * 206.21592 * 15 13 12 17 17 N 1.47026 * 107.27285 * 22.52265 * 16 15 13 18 18 C 1.34777 * 125.64732 * 180.96737 * 17 16 15 19 19 O 1.21275 * 120.00181 * 179.69628 * 18 17 16 20 20 C 1.50704 * 119.99818 * 359.69459 * 18 17 16 21 21 N 1.46496 * 109.46822 * 179.97438 * 20 18 17 22 22 C 1.36885 * 126.39742 * 269.71189 * 21 20 18 23 23 C 1.34672 * 106.81716 * 179.84408 * 22 21 20 24 24 N 1.34117 * 108.01834 * 0.42475 * 23 22 21 25 25 C 1.30504 * 109.25981 * 359.73300 * 24 23 22 26 26 C 1.47423 * 108.70392 * 0.70740 * 17 16 15 27 27 C 1.46895 * 111.27002 * 63.10343 * 12 11 10 28 28 C 1.47081 * 120.88396 * 28.79787 * 9 7 2 29 29 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.63037 * 111.49657 * 10 9 7 31 31 H 1.08994 * 109.63039 * 350.91779 * 10 9 7 32 32 H 1.09000 * 109.49206 * 186.20866 * 11 10 9 33 33 H 1.09000 * 109.51401 * 66.14518 * 11 10 9 34 34 H 1.09000 * 110.71750 * 324.77277 * 15 13 12 35 35 H 1.08997 * 110.72168 * 87.86576 * 15 13 12 36 36 H 1.08997 * 109.98273 * 263.05306 * 16 15 13 37 37 H 1.08994 * 109.77393 * 141.88228 * 16 15 13 38 38 H 1.09000 * 109.47001 * 60.00088 * 20 18 17 39 39 H 1.08997 * 109.47048 * 300.00107 * 20 18 17 40 40 H 1.08006 * 126.59179 * 359.97438 * 22 21 20 41 41 H 1.07997 * 125.98788 * 180.19097 * 23 22 21 42 42 H 1.07999 * 125.64881 * 180.02562 * 25 24 23 43 43 H 1.09005 * 110.36986 * 94.93848 * 26 17 16 44 44 H 1.08998 * 110.36798 * 217.25370 * 26 17 16 45 45 H 1.08998 * 109.49570 * 56.85905 * 27 12 11 46 46 H 1.09004 * 109.49431 * 176.93842 * 27 12 11 47 47 H 1.09005 * 109.62666 * 248.50437 * 28 9 7 48 48 H 1.08999 * 109.62650 * 9.07695 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0638 -1.2174 0.2378 9 7 1.3591 -2.3688 -0.2997 10 6 1.8092 -3.6510 0.2630 11 6 1.9697 -4.6559 -0.8826 12 7 0.7201 -4.7199 -1.6522 13 6 0.7722 -5.7943 -2.6527 14 1 1.5437 -5.5955 -3.3965 15 6 -0.6109 -5.9961 -3.3261 16 6 -0.5660 -7.4742 -3.7671 17 7 0.4323 -8.1506 -2.9260 18 6 0.7810 -9.4497 -3.0115 19 8 1.6246 -9.9015 -2.2665 20 6 0.1225 -10.3409 -4.0330 21 7 0.6705 -11.6952 -3.9250 22 6 1.7542 -12.1890 -4.5999 23 6 1.9116 -13.4663 -4.2029 24 7 0.9447 -13.7475 -3.3171 25 6 0.1974 -12.6914 -3.1457 26 6 0.9934 -7.1711 -1.9778 27 6 0.4156 -3.4283 -2.2823 28 6 0.1915 -2.3731 -1.1941 29 1 -0.4850 0.8400 -0.0004 30 1 1.0684 -4.0197 0.9725 31 1 2.7661 -3.5140 0.7666 32 1 2.1958 -5.6407 -0.4737 33 1 2.7828 -4.3376 -1.5351 34 1 -1.4161 -5.8274 -2.6111 35 1 -0.7193 -5.3389 -4.1889 36 1 -0.2744 -7.5415 -4.8152 37 1 -1.5444 -7.9322 -3.6221 38 1 0.3134 -9.9507 -5.0326 39 1 -0.9521 -10.3680 -3.8526 40 1 2.3668 -11.6561 -5.3122 41 1 2.6794 -14.1461 -4.5416 42 1 -0.6574 -12.6249 -2.4890 43 1 0.4629 -7.2169 -1.0267 44 1 2.0575 -7.3540 -1.8287 45 1 1.2502 -3.1266 -2.9152 46 1 -0.4854 -3.5227 -2.8885 47 1 -0.7049 -2.6189 -0.6246 48 1 0.0788 -1.3912 -1.6537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052123867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:52 Heat of formation + Delta-G solvation = 58.807060 kcal Electronic energy + Delta-G solvation = -28646.895598 eV Core-core repulsion = 24738.429254 eV Total energy + Delta-G solvation = -3908.466344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.99873 -41.23144 -39.84023 -38.16148 -35.85645 -34.96066 -33.43920 -31.84596 -31.73087 -30.45245 -29.97301 -28.75318 -27.37047 -25.13927 -24.47785 -23.63363 -22.29203 -22.17474 -21.59875 -20.83742 -20.46867 -18.85953 -18.53386 -18.36706 -17.55697 -16.86059 -16.67565 -16.18765 -15.85206 -15.59202 -15.38488 -15.27517 -15.13332 -15.03584 -14.93970 -14.77766 -14.56779 -14.13717 -14.01851 -13.78062 -13.68853 -13.34953 -13.19594 -12.99279 -12.72130 -12.57988 -12.52298 -12.17115 -12.02578 -11.89550 -11.81165 -11.53116 -11.44626 -11.35251 -10.97961 -10.61499 -10.51326 -9.78230 -9.43031 -9.33865 -8.66729 -7.89244 -5.36323 0.98441 1.39680 1.44713 1.46666 1.56988 1.64539 2.06542 2.25254 2.49005 2.93539 3.23238 3.26770 3.63438 3.65022 3.68695 3.78064 3.87892 4.00332 4.06667 4.13868 4.19706 4.30469 4.33259 4.36895 4.54001 4.57668 4.58201 4.63960 4.67463 4.76989 4.79066 4.86642 4.89237 4.99061 5.01944 5.13974 5.18034 5.26851 5.28076 5.35998 5.60516 5.69911 5.81581 6.10449 6.19083 6.23269 6.37304 6.40300 6.94070 7.13197 7.13622 7.82270 8.36828 9.17376 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.037382 B = 0.002015 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.840392 B =13889.962762 C =14237.483946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.292 1.292 7 C -0.265 4.265 8 H 0.063 0.937 9 N -0.615 5.615 10 C 0.145 3.855 11 C 0.055 3.945 12 N -0.527 5.527 13 C 0.069 3.931 14 H 0.052 0.948 15 C -0.120 4.120 16 C 0.099 3.901 17 N -0.610 5.610 18 C 0.507 3.493 19 O -0.581 6.581 20 C 0.098 3.902 21 N -0.448 5.448 22 C -0.045 4.045 23 C -0.059 4.059 24 N -0.538 5.538 25 C 0.183 3.817 26 C 0.121 3.879 27 C 0.056 3.944 28 C 0.185 3.815 29 H 0.251 0.749 30 H 0.016 0.984 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.198 0.802 41 H 0.179 0.821 42 H 0.226 0.774 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.018 0.982 46 H 0.093 0.907 47 H 0.001 0.999 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.236 -19.308 -15.664 25.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.219 1.219 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.339 5.339 10 C 0.019 3.981 11 C -0.075 4.075 12 N -0.252 5.252 13 C -0.040 4.040 14 H 0.070 0.930 15 C -0.158 4.158 16 C -0.023 4.023 17 N -0.344 5.344 18 C 0.295 3.705 19 O -0.461 6.461 20 C -0.027 4.027 21 N -0.131 5.131 22 C -0.178 4.178 23 C -0.206 4.206 24 N -0.257 5.257 25 C -0.100 4.100 26 C -0.002 4.002 27 C -0.073 4.073 28 C 0.059 3.941 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.041 0.959 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.176 0.824 39 H 0.180 0.820 40 H 0.215 0.785 41 H 0.197 0.803 42 H 0.242 0.758 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.037 0.963 46 H 0.112 0.888 47 H 0.019 0.981 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.399 -20.221 -14.575 25.311 hybrid contribution 1.396 2.241 -0.158 2.645 sum -3.003 -17.980 -14.733 23.438 Atomic orbital electron populations 1.70162 1.06508 1.25843 1.55404 1.25831 0.96167 1.01401 1.01025 0.85201 0.78451 0.79838 0.76900 1.19395 1.21332 1.21925 1.19511 0.92034 0.85670 1.42265 0.91933 1.44389 1.34107 1.02684 1.52703 1.21092 0.97375 0.85842 0.93800 1.22441 0.89877 0.99313 0.95822 1.61930 1.33815 1.04589 1.24895 1.22768 0.98854 0.89717 0.92640 0.93020 1.22724 0.95709 0.95887 1.01474 1.22443 0.92616 0.91720 0.95491 1.48481 1.41278 1.07982 1.36675 1.21109 0.82595 0.81521 0.85263 1.90801 1.35114 1.74383 1.45782 1.21963 1.01456 0.78250 1.01035 1.45195 1.24020 1.10830 1.33060 1.23127 0.93982 0.96760 1.03916 1.22637 1.01136 0.96356 1.00429 1.70229 1.07776 1.28712 1.19011 1.25466 1.02393 0.83321 0.98769 1.22027 0.98434 0.86833 0.92953 1.22570 0.99855 0.88730 0.96189 1.20641 0.87735 0.96089 0.89597 0.93971 0.96606 0.92602 0.89795 0.95942 0.89782 0.88192 0.87813 0.87674 0.82386 0.81966 0.78495 0.80349 0.75780 0.91318 0.92488 0.96329 0.88842 0.98108 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.34 11.17 21.65 0.24 -54.10 16 2 C -0.05 -2.69 4.98 84.86 0.42 -2.27 16 3 Si 0.97 44.38 29.58 68.60 2.03 46.41 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 7 C -0.26 -14.55 9.62 84.04 0.81 -13.74 16 8 H 0.06 3.39 7.87 -2.91 -0.02 3.37 16 9 N -0.61 -30.88 3.03 -698.13 -2.11 -32.99 16 10 C 0.14 6.08 6.69 86.35 0.58 6.66 16 11 C 0.05 1.84 5.46 86.38 0.47 2.31 16 12 N -0.53 -16.02 4.53 -861.92 -3.90 -19.92 16 13 C 0.07 1.50 2.71 46.31 0.13 1.62 16 14 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 15 C -0.12 -1.63 5.44 31.78 0.17 -1.46 16 16 C 0.10 0.72 6.48 86.73 0.56 1.28 16 17 N -0.61 -9.45 3.33 -811.80 -2.70 -12.15 16 18 C 0.51 8.89 7.92 87.66 0.69 9.59 16 19 O -0.58 -17.21 16.69 -3.01 -0.05 -17.26 16 20 C 0.10 0.73 5.82 85.64 0.50 1.23 16 21 N -0.45 -6.84 2.24 -533.15 -1.19 -8.04 16 22 C -0.05 -0.75 11.58 83.09 0.96 0.22 16 23 C -0.06 -1.24 11.87 83.53 0.99 -0.25 16 24 N -0.54 -13.32 11.25 -200.32 -2.25 -15.57 16 25 C 0.18 3.44 12.56 180.26 2.26 5.71 16 26 C 0.12 2.67 5.23 86.86 0.45 3.12 16 27 C 0.06 1.90 5.49 86.38 0.47 2.38 16 28 C 0.19 8.66 5.39 86.35 0.47 9.12 16 29 H 0.25 14.08 8.31 -92.71 -0.77 13.30 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 2.29 7.95 -2.39 -0.02 2.27 16 32 H 0.08 2.46 6.73 -2.39 -0.02 2.44 16 33 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.08 7.94 -2.39 -0.02 1.06 16 36 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.16 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.20 1.98 8.06 -2.91 -0.02 1.95 16 41 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.23 2.69 8.06 -2.91 -0.02 2.67 16 43 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.06 1.47 7.74 -2.39 -0.02 1.45 16 45 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.09 2.62 6.93 -2.38 -0.02 2.61 16 47 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 48 H 0.06 2.96 6.21 -2.39 -0.01 2.95 16 Total: -1.00 -81.48 383.80 0.94 -80.54 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.94 Total: 7.58 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 9.95 Total: 25.50 kcal Atomic # 7 Polarization: -130.85 SS G_CDS: -11.92 Total: -142.78 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.05 Total: -17.26 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -81.48 0.94 -80.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052123867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.349 kcal (2) G-P(sol) polarization free energy of solvation -81.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds