Wall clock time and date at job start Tue Mar 31 2020 18:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48503 * 109.46821 * 239.99666 * 3 2 1 5 5 H 1.48503 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47266 * 119.99549 * 3 2 1 7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00027 * 195.71420 * 7 2 1 9 9 N 1.36936 * 120.00147 * 15.71271 * 7 2 1 10 10 C 1.44576 * 118.64501 * 206.54702 * 9 7 2 11 11 C 1.54867 * 109.57815 * 270.71540 * 10 9 7 12 12 C 1.47100 * 110.31821 * 288.74676 * 11 10 9 13 13 C 1.52565 * 114.32807 * 62.80096 * 12 11 10 14 14 H 1.09001 * 109.48518 * 34.95398 * 13 12 11 15 15 N 1.46501 * 109.48866 * 154.99646 * 13 12 11 16 16 C 1.34774 * 120.00066 * 205.00160 * 15 13 12 17 17 O 1.21604 * 119.99935 * 0.02562 * 16 15 13 18 18 C 1.47520 * 119.99941 * 180.02562 * 16 15 13 19 19 C 1.36601 * 125.77041 * 179.71646 * 18 16 15 20 20 N 1.34813 * 106.84008 * 179.89786 * 19 18 16 21 21 C 1.46502 * 126.59452 * 180.13220 * 20 19 18 22 22 C 1.53787 * 113.61388 * 12.73795 * 21 20 19 23 23 C 1.53780 * 87.08211 * 220.02187 * 22 21 20 24 24 C 1.53782 * 113.61089 * 275.24338 * 21 20 19 25 25 N 1.40204 * 106.80952 * 0.35445 * 20 19 18 26 26 N 1.28764 * 108.37038 * 359.77393 * 25 20 19 27 27 C 1.50880 * 109.36019 * 274.98607 * 13 12 11 28 28 C 1.47583 * 118.62322 * 26.50043 * 9 7 2 29 29 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.44873 * 150.68597 * 10 9 7 31 31 H 1.09000 * 109.45128 * 30.74179 * 10 9 7 32 32 H 1.09002 * 109.32751 * 49.00297 * 11 10 9 33 33 H 1.08994 * 109.33056 * 168.65895 * 11 10 9 34 34 H 1.09005 * 108.50830 * 184.05960 * 12 11 10 35 35 H 1.09000 * 108.51051 * 301.54317 * 12 11 10 36 36 H 0.96995 * 119.99833 * 24.99968 * 15 13 12 37 37 H 1.08001 * 126.57880 * 0.03606 * 19 18 16 38 38 H 1.08996 * 112.85375 * 144.04659 * 21 20 19 39 39 H 1.09004 * 113.61677 * 334.57103 * 22 21 20 40 40 H 1.09004 * 113.61001 * 105.47115 * 22 21 20 41 41 H 1.09006 * 113.61045 * 270.88788 * 23 22 21 42 42 H 1.08997 * 113.61654 * 139.98488 * 23 22 21 43 43 H 1.09003 * 113.61389 * 254.52679 * 24 21 20 44 44 H 1.08996 * 113.61694 * 25.35186 * 24 21 20 45 45 H 1.08996 * 109.36492 * 212.07788 * 27 13 12 46 46 H 1.08996 * 109.36653 * 331.82201 * 27 13 12 47 47 H 1.09004 * 108.94507 * 17.20076 * 28 9 7 48 48 H 1.08999 * 108.89440 * 258.51064 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0600 -1.2195 0.2539 9 7 1.3640 -2.3661 -0.3201 10 6 1.8685 -3.6097 0.2175 11 6 2.9232 -4.2030 -0.7490 12 6 2.2724 -4.7073 -1.9680 13 6 1.5652 -3.6358 -2.7923 14 1 2.1248 -2.7023 -2.7319 15 7 1.4848 -4.0679 -4.1898 16 6 1.3822 -3.1523 -5.1734 17 8 1.3569 -1.9675 -4.9010 18 6 1.3007 -3.5875 -6.5806 19 6 1.1890 -2.7651 -7.6656 20 7 1.1475 -3.5587 -8.7546 21 6 1.0338 -3.1232 -10.1487 22 6 1.2693 -1.6162 -10.3446 23 6 0.1145 -1.6475 -11.3596 24 6 -0.4152 -2.8756 -10.6005 25 7 1.2288 -4.8811 -8.2959 26 7 1.3179 -4.8604 -7.0115 27 6 0.1735 -3.4245 -2.2493 28 6 0.1806 -2.2986 -1.1994 29 1 -0.4850 0.8400 -0.0004 30 1 1.0457 -4.3150 0.3342 31 1 2.3289 -3.4254 1.1882 32 1 3.6421 -3.4289 -1.0177 33 1 3.4440 -5.0233 -0.2553 34 1 3.0289 -5.1818 -2.5932 35 1 1.5409 -5.4632 -1.6824 36 1 1.5054 -5.0130 -4.4071 37 1 1.1450 -1.6860 -7.6534 38 1 1.6044 -3.7485 -10.8354 39 1 1.0542 -1.0216 -9.4567 40 1 2.2357 -1.3795 -10.7897 41 1 0.4343 -1.8682 -12.3781 42 1 -0.5430 -0.7802 -11.2999 43 1 -0.8087 -3.6556 -11.2523 44 1 -1.0911 -2.6267 -9.7824 45 1 -0.4957 -3.1531 -3.0657 46 1 -0.1774 -4.3463 -1.7856 47 1 0.1750 -1.3366 -1.7119 48 1 -0.7183 -2.3789 -0.5882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052387448.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:55 Heat of formation + Delta-G solvation = 105.795240 kcal Electronic energy + Delta-G solvation = -29052.111499 eV Core-core repulsion = 25145.682715 eV Total energy + Delta-G solvation = -3906.428784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.40355 -39.60687 -39.12271 -37.46092 -34.60075 -33.40663 -32.71070 -31.29517 -30.70448 -30.10024 -26.63860 -26.42090 -25.87529 -24.35242 -23.29677 -22.81365 -22.55647 -20.35474 -20.06560 -20.03979 -19.12417 -18.29768 -16.56245 -16.45745 -16.43232 -15.87184 -15.77488 -15.04016 -14.84802 -14.38259 -14.24718 -14.04368 -13.62562 -13.47435 -13.20417 -13.09814 -13.04378 -12.75971 -12.49508 -12.32816 -12.19452 -11.82940 -11.54208 -11.43868 -11.35434 -11.07807 -11.00299 -10.80206 -10.68776 -10.42986 -10.35687 -10.13155 -9.97781 -9.87725 -9.66652 -9.60069 -9.49656 -9.35692 -8.60589 -8.24731 -6.54554 -5.65683 -3.09186 1.00806 1.73888 1.80913 3.36965 3.47838 3.52473 3.53134 3.56019 3.60368 3.76502 4.05747 4.10018 4.14494 4.60534 4.61998 4.71304 4.89337 4.95856 5.02227 5.11646 5.21864 5.26283 5.28337 5.33886 5.39152 5.57878 5.59205 5.65063 5.76606 5.87004 6.10026 6.20750 6.21352 6.31490 6.41328 6.53367 6.59520 6.69906 6.78005 6.86829 6.94348 7.09763 7.16240 7.56143 7.72304 7.83917 7.95381 7.97792 8.52991 8.60266 9.36545 10.03917 10.48402 11.41826 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.002910 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.307682 B = 9618.625710 C =10954.701768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.007 3.993 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.156 3.844 11 C -0.145 4.145 12 C -0.107 4.107 13 C 0.155 3.845 14 H 0.104 0.896 15 N -0.711 5.711 16 C 0.596 3.404 17 O -0.526 6.526 18 C -0.094 4.094 19 C 0.090 3.910 20 N -0.352 5.352 21 C 0.122 3.878 22 C -0.148 4.148 23 C -0.136 4.136 24 C -0.145 4.145 25 N -0.071 5.071 26 N -0.208 5.208 27 C -0.147 4.147 28 C 0.183 3.817 29 H 0.253 0.747 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.399 0.601 37 H 0.202 0.798 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.078 0.922 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.871 -7.707 -22.262 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.729 3.271 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.145 4.145 13 C 0.052 3.948 14 H 0.122 0.878 15 N -0.361 5.361 16 C 0.379 3.621 17 O -0.401 6.401 18 C -0.233 4.233 19 C -0.067 4.067 20 N -0.137 5.137 21 C 0.020 3.980 22 C -0.186 4.186 23 C -0.174 4.174 24 C -0.184 4.184 25 N -0.050 5.050 26 N -0.081 5.081 27 C -0.187 4.187 28 C 0.058 3.942 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.233 0.767 37 H 0.219 0.781 38 H 0.151 0.849 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.739 -8.193 -22.457 23.916 hybrid contribution 0.403 1.384 -0.112 1.445 sum 1.143 -6.809 -22.569 23.601 Atomic orbital electron populations 1.70049 1.05217 1.25410 1.54121 1.25002 0.95228 0.98280 1.00689 0.86419 0.78971 0.83659 0.78012 1.20985 1.21739 1.21056 1.19130 0.92322 0.85058 1.42260 0.91841 1.43666 1.32497 1.01913 1.53179 1.20700 0.93920 0.88395 0.94175 1.21450 1.00329 0.99918 0.96857 1.20572 0.99278 0.97466 0.97232 1.20579 0.97803 0.99349 0.77094 0.87778 1.46115 1.73455 1.09532 1.06974 1.16757 0.77175 0.85889 0.82298 1.90893 1.50196 1.16063 1.82936 1.21678 1.16303 0.89042 0.96291 1.23266 0.98096 0.99791 0.85507 1.50529 1.49169 1.06514 1.07499 1.23424 0.99985 0.96997 0.77564 1.23487 1.01075 0.92927 1.01144 1.22715 0.97557 0.98752 0.98328 1.23449 0.94862 0.99114 1.00967 1.81938 1.22623 0.96539 1.03934 1.74616 1.10185 1.19535 1.03772 1.22455 0.95413 1.00934 0.99913 1.20945 0.88517 0.95652 0.89127 0.93737 0.94963 0.93608 0.91917 0.93023 0.93279 0.92718 0.76670 0.78109 0.84924 0.88377 0.89292 0.89028 0.89674 0.89662 0.88901 0.92584 0.93497 0.90347 0.95677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 11.01 55.49 0.61 -26.27 16 2 C 0.01 0.19 4.87 -17.43 -0.08 0.10 16 3 Si 0.90 22.52 29.58 -169.99 -5.03 17.50 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.26 -7.18 9.44 -15.06 -0.14 -7.32 16 8 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.86 2.27 -172.11 -0.39 -15.25 16 10 C 0.16 3.27 5.66 -4.08 -0.02 3.24 16 11 C -0.14 -2.56 5.74 -28.58 -0.16 -2.73 16 12 C -0.11 -1.76 4.69 -29.79 -0.14 -1.90 16 13 C 0.15 2.91 2.06 -69.22 -0.14 2.76 16 14 H 0.10 2.40 6.91 -51.93 -0.36 2.04 16 15 N -0.71 -11.71 4.93 -56.11 -0.28 -11.98 16 16 C 0.60 10.44 7.64 -12.48 -0.10 10.35 16 17 O -0.53 -11.13 16.53 5.27 0.09 -11.04 16 18 C -0.09 -1.37 6.99 -83.55 -0.58 -1.96 16 19 C 0.09 1.04 10.49 -16.83 -0.18 0.87 16 20 N -0.35 -3.61 3.83 -53.77 -0.21 -3.81 16 21 C 0.12 0.75 5.06 -67.11 -0.34 0.41 16 22 C -0.15 -0.65 7.44 -25.92 -0.19 -0.84 16 23 C -0.14 -0.45 8.08 -25.91 -0.21 -0.66 16 24 C -0.15 -0.73 7.88 -25.91 -0.20 -0.94 16 25 N -0.07 -0.94 13.78 60.35 0.83 -0.11 16 26 N -0.21 -3.02 12.04 32.85 0.40 -2.63 16 27 C -0.15 -2.97 5.39 -27.30 -0.15 -3.11 16 28 C 0.18 4.55 4.67 -2.96 -0.01 4.54 16 29 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 30 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.05 0.97 7.99 -51.93 -0.41 0.55 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.72 8.04 -51.93 -0.42 0.30 16 35 H 0.05 0.83 7.36 -51.93 -0.38 0.45 16 36 H 0.40 5.68 8.29 -40.82 -0.34 5.34 16 37 H 0.20 1.86 6.78 -52.49 -0.36 1.50 16 38 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.47 6.39 -51.93 -0.33 0.14 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 1.14 7.85 -51.93 -0.41 0.73 16 46 H 0.05 0.87 7.32 -51.93 -0.38 0.49 16 47 H 0.08 2.23 6.33 -51.93 -0.33 1.90 16 48 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 LS Contribution 382.05 15.07 5.76 5.76 Total: -1.00 -33.66 382.05 -8.36 -42.02 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.48 Total: 3.02 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.66 Total: 2.80 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.97 Total: -60.05 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.66 -8.36 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052387448.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.812 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds