Wall clock time and date at job start Tue Mar 31 2020 18:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48503 * 109.46821 * 239.99666 * 3 2 1 5 5 H 1.48503 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47266 * 119.99549 * 3 2 1 7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00027 * 195.71420 * 7 2 1 9 9 N 1.36936 * 120.00147 * 15.71271 * 7 2 1 10 10 C 1.44576 * 118.64501 * 206.54702 * 9 7 2 11 11 C 1.54867 * 109.57815 * 270.71540 * 10 9 7 12 12 C 1.47100 * 110.31821 * 288.74676 * 11 10 9 13 13 C 1.52565 * 114.32807 * 62.80096 * 12 11 10 14 14 H 1.09001 * 109.48518 * 34.95398 * 13 12 11 15 15 N 1.46501 * 109.48866 * 154.99646 * 13 12 11 16 16 C 1.34774 * 120.00066 * 205.00160 * 15 13 12 17 17 O 1.21604 * 119.99935 * 0.02562 * 16 15 13 18 18 C 1.47520 * 119.99941 * 180.02562 * 16 15 13 19 19 C 1.36601 * 125.77041 * 179.71646 * 18 16 15 20 20 N 1.34813 * 106.84008 * 179.89786 * 19 18 16 21 21 C 1.46502 * 126.59452 * 180.13220 * 20 19 18 22 22 C 1.53787 * 113.61388 * 12.73795 * 21 20 19 23 23 C 1.53780 * 87.08211 * 220.02187 * 22 21 20 24 24 C 1.53782 * 113.61089 * 275.24338 * 21 20 19 25 25 N 1.40204 * 106.80952 * 0.35445 * 20 19 18 26 26 N 1.28764 * 108.37038 * 359.77393 * 25 20 19 27 27 C 1.50880 * 109.36019 * 274.98607 * 13 12 11 28 28 C 1.47583 * 118.62322 * 26.50043 * 9 7 2 29 29 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.44873 * 150.68597 * 10 9 7 31 31 H 1.09000 * 109.45128 * 30.74179 * 10 9 7 32 32 H 1.09002 * 109.32751 * 49.00297 * 11 10 9 33 33 H 1.08994 * 109.33056 * 168.65895 * 11 10 9 34 34 H 1.09005 * 108.50830 * 184.05960 * 12 11 10 35 35 H 1.09000 * 108.51051 * 301.54317 * 12 11 10 36 36 H 0.96995 * 119.99833 * 24.99968 * 15 13 12 37 37 H 1.08001 * 126.57880 * 0.03606 * 19 18 16 38 38 H 1.08996 * 112.85375 * 144.04659 * 21 20 19 39 39 H 1.09004 * 113.61677 * 334.57103 * 22 21 20 40 40 H 1.09004 * 113.61001 * 105.47115 * 22 21 20 41 41 H 1.09006 * 113.61045 * 270.88788 * 23 22 21 42 42 H 1.08997 * 113.61654 * 139.98488 * 23 22 21 43 43 H 1.09003 * 113.61389 * 254.52679 * 24 21 20 44 44 H 1.08996 * 113.61694 * 25.35186 * 24 21 20 45 45 H 1.08996 * 109.36492 * 212.07788 * 27 13 12 46 46 H 1.08996 * 109.36653 * 331.82201 * 27 13 12 47 47 H 1.09004 * 108.94507 * 17.20076 * 28 9 7 48 48 H 1.08999 * 108.89440 * 258.51064 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0600 -1.2195 0.2539 9 7 1.3640 -2.3661 -0.3201 10 6 1.8685 -3.6097 0.2175 11 6 2.9232 -4.2030 -0.7490 12 6 2.2724 -4.7073 -1.9680 13 6 1.5652 -3.6358 -2.7923 14 1 2.1248 -2.7023 -2.7319 15 7 1.4848 -4.0679 -4.1898 16 6 1.3822 -3.1523 -5.1734 17 8 1.3569 -1.9675 -4.9010 18 6 1.3007 -3.5875 -6.5806 19 6 1.1890 -2.7651 -7.6656 20 7 1.1475 -3.5587 -8.7546 21 6 1.0338 -3.1232 -10.1487 22 6 1.2693 -1.6162 -10.3446 23 6 0.1145 -1.6475 -11.3596 24 6 -0.4152 -2.8756 -10.6005 25 7 1.2288 -4.8811 -8.2959 26 7 1.3179 -4.8604 -7.0115 27 6 0.1735 -3.4245 -2.2493 28 6 0.1806 -2.2986 -1.1994 29 1 -0.4850 0.8400 -0.0004 30 1 1.0457 -4.3150 0.3342 31 1 2.3289 -3.4254 1.1882 32 1 3.6421 -3.4289 -1.0177 33 1 3.4440 -5.0233 -0.2553 34 1 3.0289 -5.1818 -2.5932 35 1 1.5409 -5.4632 -1.6824 36 1 1.5054 -5.0130 -4.4071 37 1 1.1450 -1.6860 -7.6534 38 1 1.6044 -3.7485 -10.8354 39 1 1.0542 -1.0216 -9.4567 40 1 2.2357 -1.3795 -10.7897 41 1 0.4343 -1.8682 -12.3781 42 1 -0.5430 -0.7802 -11.2999 43 1 -0.8087 -3.6556 -11.2523 44 1 -1.0911 -2.6267 -9.7824 45 1 -0.4957 -3.1531 -3.0657 46 1 -0.1774 -4.3463 -1.7856 47 1 0.1750 -1.3366 -1.7119 48 1 -0.7183 -2.3789 -0.5882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052387448.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:54 Heat of formation + Delta-G solvation = 83.277336 kcal Electronic energy + Delta-G solvation = -29053.087949 eV Core-core repulsion = 25145.682715 eV Total energy + Delta-G solvation = -3907.405234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.36277 -40.91802 -39.77533 -39.07438 -36.32053 -34.59261 -34.10174 -32.75063 -32.45110 -31.54809 -27.93704 -27.08431 -26.83612 -25.83054 -25.13718 -24.17265 -23.33870 -21.70256 -21.44930 -20.94790 -20.55575 -19.27529 -18.52281 -17.53625 -17.38959 -17.14629 -16.79819 -16.45904 -16.12654 -15.80284 -15.74246 -15.41976 -15.27242 -14.80524 -14.41574 -14.14751 -13.99642 -13.80757 -13.59725 -13.53142 -13.32240 -13.21673 -12.98378 -12.93685 -12.69162 -12.51578 -12.15747 -12.08118 -11.99288 -11.86818 -11.72169 -11.52780 -11.49690 -11.39589 -11.32849 -11.15894 -11.13181 -10.44369 -10.39637 -10.02505 -8.60956 -7.81868 -5.27137 0.07071 0.58094 1.01705 1.44140 1.49318 1.54189 2.11949 2.22679 2.54124 3.04183 3.13478 3.32278 3.36392 3.61056 3.71166 3.73665 3.74161 3.82929 3.87949 4.09739 4.11740 4.39386 4.43617 4.48402 4.50669 4.57744 4.64702 4.71719 4.74009 4.86272 4.88659 4.92146 4.95744 5.03848 5.04017 5.17578 5.24054 5.25900 5.26488 5.36784 5.48732 5.52641 5.60158 5.64737 5.72210 5.80802 6.45191 6.46756 6.87265 7.20037 7.22447 8.00198 8.38709 9.23202 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.002910 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.307682 B = 9618.625710 C =10954.701768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.959 3.041 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.148 3.852 11 C -0.131 4.131 12 C -0.105 4.105 13 C 0.164 3.836 14 H 0.057 0.943 15 N -0.700 5.700 16 C 0.596 3.404 17 O -0.572 6.572 18 C -0.117 4.117 19 C 0.102 3.898 20 N -0.335 5.335 21 C 0.106 3.894 22 C -0.146 4.146 23 C -0.123 4.123 24 C -0.146 4.146 25 N -0.084 5.084 26 N -0.220 5.220 27 C -0.132 4.132 28 C 0.197 3.803 29 H 0.246 0.754 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.414 0.586 37 H 0.222 0.778 38 H 0.151 0.849 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.032 0.968 48 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -9.263 -24.263 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.787 3.213 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.172 4.172 12 C -0.143 4.143 13 C 0.060 3.940 14 H 0.076 0.924 15 N -0.350 5.350 16 C 0.381 3.619 17 O -0.450 6.450 18 C -0.257 4.257 19 C -0.056 4.056 20 N -0.120 5.120 21 C 0.006 3.994 22 C -0.185 4.185 23 C -0.161 4.161 24 C -0.185 4.185 25 N -0.063 5.063 26 N -0.093 5.093 27 C -0.172 4.172 28 C 0.071 3.929 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.250 0.750 37 H 0.239 0.761 38 H 0.168 0.832 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 1.865 -9.826 -24.485 26.449 hybrid contribution 0.050 1.836 0.417 1.883 sum 1.915 -7.990 -24.069 25.432 Atomic orbital electron populations 1.70208 1.06519 1.25491 1.55916 1.25732 0.96009 1.01337 1.01475 0.85469 0.77731 0.79954 0.78122 1.21241 1.22009 1.19655 1.19445 0.92531 0.86339 1.40843 0.91733 1.43842 1.32298 1.02797 1.53708 1.20949 0.95189 0.87007 0.94709 1.21289 0.98838 1.00265 0.96760 1.20536 1.00335 0.96803 0.96588 1.20257 0.96283 0.98659 0.78772 0.92426 1.45919 1.72947 1.10202 1.05924 1.17107 0.75984 0.85287 0.83530 1.90870 1.52343 1.17926 1.83860 1.21356 1.19048 0.89978 0.95335 1.23542 0.96332 1.00564 0.85115 1.50845 1.47085 1.05333 1.08695 1.24066 1.01335 0.98479 0.75522 1.23540 1.02334 0.91197 1.01391 1.22715 0.96706 0.97872 0.98762 1.23460 0.93784 1.00347 1.00871 1.81848 1.22946 0.98130 1.03410 1.74575 1.10776 1.19513 1.04454 1.22250 0.96623 0.99977 0.98353 1.20584 0.87595 0.95331 0.89385 0.94443 0.93427 0.94166 0.94207 0.89216 0.90626 0.90295 0.74952 0.76131 0.83168 0.88903 0.87930 0.87158 0.89301 0.88817 0.90376 0.93280 0.90866 0.94949 0.98462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.15 11.01 21.65 0.24 -57.91 16 2 C -0.05 -2.97 4.87 84.86 0.41 -2.56 16 3 Si 0.96 47.69 29.58 68.60 2.03 49.72 16 4 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.26 -14.91 9.44 84.03 0.79 -14.12 16 8 H 0.06 3.60 7.88 -2.91 -0.02 3.57 16 9 N -0.60 -31.03 2.27 -698.42 -1.58 -32.62 16 10 C 0.15 6.04 5.66 87.38 0.49 6.53 16 11 C -0.13 -4.34 5.74 29.40 0.17 -4.17 16 12 C -0.10 -3.14 4.69 28.62 0.13 -3.00 16 13 C 0.16 6.12 2.06 44.16 0.09 6.22 16 14 H 0.06 2.74 6.91 -2.39 -0.02 2.72 16 15 N -0.70 -22.64 4.93 -449.69 -2.22 -24.86 16 16 C 0.60 21.16 7.64 86.69 0.66 21.82 16 17 O -0.57 -25.17 16.53 -4.04 -0.07 -25.23 16 18 C -0.12 -3.40 6.99 40.82 0.29 -3.12 16 19 C 0.10 2.29 10.49 83.85 0.88 3.17 16 20 N -0.34 -6.37 3.83 -324.03 -1.24 -7.61 16 21 C 0.11 1.06 5.06 45.52 0.23 1.29 16 22 C -0.15 -0.93 7.44 31.12 0.23 -0.70 16 23 C -0.12 -0.49 8.08 31.12 0.25 -0.24 16 24 C -0.15 -1.18 7.88 31.12 0.25 -0.93 16 25 N -0.08 -2.11 13.78 37.02 0.51 -1.60 16 26 N -0.22 -6.21 12.04 -50.00 -0.60 -6.82 16 27 C -0.13 -5.36 5.39 30.22 0.16 -5.20 16 28 C 0.20 10.20 4.67 86.49 0.40 10.61 16 29 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 31 H 0.04 1.67 7.99 -2.39 -0.02 1.65 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.08 1.93 8.04 -2.38 -0.02 1.91 16 35 H 0.08 2.05 7.36 -2.39 -0.02 2.04 16 36 H 0.41 11.08 8.29 -92.71 -0.77 10.31 16 37 H 0.22 3.91 6.78 -2.91 -0.02 3.89 16 38 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 0.72 6.39 -2.39 -0.02 0.71 16 40 H 0.10 0.41 8.14 -2.39 -0.02 0.40 16 41 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 42 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.05 2.04 7.85 -2.39 -0.02 2.02 16 46 H 0.07 2.58 7.32 -2.39 -0.02 2.57 16 47 H 0.03 1.95 6.33 -2.38 -0.02 1.94 16 48 H 0.00 -0.15 8.03 -2.39 -0.02 -0.17 16 Total: -1.00 -77.34 382.05 2.72 -74.62 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.21 Total: 16.71 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 5.45 Total: 15.60 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -4.89 Total: -131.42 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.07 Total: -25.23 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -77.34 2.72 -74.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052387448.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.899 kcal (2) G-P(sol) polarization free energy of solvation -77.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds