Wall clock time and date at job start Tue Mar 31 2020 18:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48505 * 109.47256 * 274.22681 * 3 2 1 5 5 H 1.48502 * 109.47223 * 34.22548 * 3 2 1 6 6 H 1.48499 * 109.47414 * 154.22826 * 3 2 1 7 7 C 1.38807 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00498 * 160.12366 * 7 2 1 9 9 N 1.36940 * 120.00049 * 340.39492 * 7 2 1 10 10 C 1.50166 * 120.53611 * 336.41201 * 9 7 2 11 11 C 1.46238 * 107.53359 * 109.56355 * 10 9 7 12 12 C 1.52522 * 114.27766 * 58.41072 * 11 10 9 13 13 C 1.50130 * 105.41039 * 270.59178 * 12 11 10 14 14 H 1.08999 * 109.21026 * 337.38294 * 13 12 11 15 15 N 1.46504 * 109.20813 * 218.02877 * 13 12 11 16 16 C 1.34772 * 120.00161 * 154.99656 * 15 13 12 17 17 O 1.21593 * 120.00150 * 0.02562 * 16 15 13 18 18 C 1.47520 * 120.00029 * 179.97438 * 16 15 13 19 19 C 1.36599 * 125.77249 * 180.02562 * 18 16 15 20 20 N 1.34813 * 106.84086 * 179.97438 * 19 18 16 21 21 C 1.46506 * 126.59079 * 179.97438 * 20 19 18 22 22 C 1.53777 * 113.61512 * 12.50358 * 21 20 19 23 23 C 1.53787 * 87.07755 * 220.01702 * 22 21 20 24 24 C 1.53775 * 87.08264 * 25.42933 * 23 22 21 25 25 N 1.40209 * 106.81148 * 359.97438 * 20 19 18 26 26 N 1.28763 * 108.36784 * 359.74984 * 25 20 19 27 27 C 1.54840 * 110.81469 * 97.68512 * 13 12 11 28 28 C 1.43436 * 120.53588 * 156.12456 * 9 7 2 29 29 H 0.97002 * 120.00237 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.84390 * 229.06940 * 10 9 7 31 31 H 1.09003 * 109.84422 * 350.05447 * 10 9 7 32 32 H 1.09004 * 108.51746 * 179.64904 * 11 10 9 33 33 H 1.09000 * 108.52306 * 297.31799 * 11 10 9 34 34 H 1.09003 * 110.25271 * 29.56300 * 12 11 10 35 35 H 1.08997 * 110.24774 * 151.47751 * 12 11 10 36 36 H 0.97001 * 119.99866 * 335.00251 * 15 13 12 37 37 H 1.08005 * 126.57860 * 359.97438 * 19 18 16 38 38 H 1.09006 * 112.84247 * 143.80789 * 21 20 19 39 39 H 1.08995 * 113.61382 * 334.55884 * 22 21 20 40 40 H 1.08997 * 113.61568 * 105.46753 * 22 21 20 41 41 H 1.09004 * 113.61320 * 270.88366 * 23 22 21 42 42 H 1.08998 * 113.61600 * 139.98065 * 23 22 21 43 43 H 1.08994 * 113.62141 * 220.01734 * 24 23 22 44 44 H 1.09008 * 113.61386 * 89.11572 * 24 23 22 45 45 H 1.09005 * 109.35758 * 81.33912 * 27 13 12 46 46 H 1.09007 * 109.35877 * 200.92239 * 27 13 12 47 47 H 1.09004 * 108.15830 * 33.31613 * 28 9 7 48 48 H 1.09008 * 108.15507 * 149.87519 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4084 2.0980 -1.3963 5 1 1.4953 2.6252 0.7875 6 1 3.5896 1.4160 0.6087 7 6 2.0102 -1.2021 -0.0005 8 1 3.0420 -1.2299 -0.3185 9 7 1.3851 -2.3538 0.3969 10 6 0.1904 -2.2992 1.3050 11 6 -0.9805 -2.6801 0.5161 12 6 -0.8879 -4.0658 -0.1146 13 6 -0.2431 -3.8524 -1.4535 14 1 -0.3932 -2.8181 -1.7631 15 7 -0.8647 -4.7443 -2.4355 16 6 -0.8466 -4.4230 -3.7442 17 8 -0.3140 -3.3930 -4.1100 18 6 -1.4721 -5.3214 -4.7331 19 6 -1.5217 -5.1131 -6.0822 20 7 -2.1759 -6.1642 -6.6159 21 6 -2.4720 -6.3798 -8.0344 22 6 -1.7069 -5.4331 -8.9742 23 6 -3.0006 -5.3345 -9.7998 24 6 -3.7585 -5.6831 -8.5080 25 7 -2.5183 -7.0112 -5.5523 26 7 -2.0835 -6.4867 -4.4597 27 6 1.2753 -4.1479 -1.3863 28 6 1.8571 -3.6316 -0.0525 29 1 -0.4850 0.8400 -0.0004 30 1 0.3222 -2.9967 2.1322 31 1 0.0641 -1.2872 1.6898 32 1 -1.8577 -2.6519 1.1626 33 1 -1.1148 -1.9479 -0.2801 34 1 -0.2710 -4.7202 0.5012 35 1 -1.8837 -4.4920 -0.2367 36 1 -1.2894 -5.5662 -2.1437 37 1 -1.1149 -4.2684 -6.6184 38 1 -2.4111 -7.4287 -8.3247 39 1 -1.4157 -4.4934 -8.5050 40 1 -0.8857 -5.9146 -9.5051 41 1 -3.0836 -6.0972 -10.5741 42 1 -3.2070 -4.3302 -10.1697 43 1 -4.5935 -6.3664 -8.6625 44 1 -4.0282 -4.8117 -7.9113 45 1 1.4378 -5.2231 -1.4610 46 1 1.7774 -3.6501 -2.2160 47 1 2.9404 -3.5753 -0.1591 48 1 1.6351 -4.3669 0.7210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052387449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:58 Heat of formation + Delta-G solvation = 113.066859 kcal Electronic energy + Delta-G solvation = -29058.034838 eV Core-core repulsion = 25151.921375 eV Total energy + Delta-G solvation = -3906.113463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.36907 -39.54207 -39.06709 -37.49892 -34.55174 -33.35458 -32.16074 -31.51520 -31.00867 -29.66406 -26.61170 -26.41042 -26.00226 -24.20855 -23.62748 -22.54852 -22.37683 -20.42773 -20.05127 -19.87721 -19.00931 -18.23660 -16.63603 -16.45561 -16.37116 -15.80674 -15.55067 -14.97619 -14.82926 -14.43556 -14.21265 -13.73313 -13.69634 -13.59512 -13.18706 -13.11768 -13.02417 -12.46200 -12.37826 -12.15735 -12.14705 -11.76184 -11.45249 -11.37901 -11.33299 -11.19449 -11.05419 -10.71467 -10.55067 -10.40432 -10.32478 -10.16299 -9.98656 -9.72055 -9.52877 -9.41482 -9.31654 -9.26274 -8.48514 -8.27392 -6.62216 -5.70234 -3.08734 1.03757 1.78231 1.83797 3.43957 3.45053 3.52254 3.54716 3.57984 3.66093 3.77717 4.06738 4.11191 4.17863 4.59721 4.64359 4.73468 4.91811 4.98332 5.03947 5.13009 5.22648 5.28830 5.35382 5.42256 5.47748 5.61221 5.66137 5.75099 5.86909 5.99566 6.11253 6.23918 6.36321 6.40916 6.51641 6.57304 6.79490 6.95793 6.97913 7.02766 7.11014 7.22424 7.30903 7.66373 7.78554 7.83803 8.04703 8.06076 8.52036 8.60782 9.28289 9.95811 10.48601 11.37450 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017246 B = 0.002657 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.218919 B =10535.866239 C =11441.670933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.166 3.834 11 C -0.130 4.130 12 C -0.122 4.122 13 C 0.156 3.844 14 H 0.104 0.896 15 N -0.711 5.711 16 C 0.595 3.405 17 O -0.531 6.531 18 C -0.093 4.093 19 C 0.088 3.912 20 N -0.353 5.353 21 C 0.122 3.878 22 C -0.148 4.148 23 C -0.136 4.136 24 C -0.145 4.145 25 N -0.071 5.071 26 N -0.207 5.207 27 C -0.151 4.151 28 C 0.162 3.838 29 H 0.251 0.749 30 H 0.006 0.994 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.399 0.601 37 H 0.202 0.798 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.046 0.954 46 H 0.056 0.944 47 H 0.033 0.967 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 -13.629 -16.434 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.042 3.958 11 C -0.169 4.169 12 C -0.160 4.160 13 C 0.053 3.947 14 H 0.122 0.878 15 N -0.360 5.360 16 C 0.377 3.623 17 O -0.407 6.407 18 C -0.232 4.232 19 C -0.068 4.068 20 N -0.138 5.138 21 C 0.020 3.980 22 C -0.186 4.186 23 C -0.174 4.174 24 C -0.184 4.184 25 N -0.051 5.051 26 N -0.081 5.081 27 C -0.193 4.193 28 C 0.032 3.968 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.233 0.767 37 H 0.218 0.782 38 H 0.151 0.849 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.755 -14.033 -16.258 22.834 hybrid contribution 0.543 1.231 -0.568 1.460 sum -7.212 -12.803 -16.826 22.339 Atomic orbital electron populations 1.69962 1.05054 1.25103 1.54340 1.24885 0.95215 0.98176 1.01262 0.86334 0.79225 0.84054 0.77481 1.21657 1.21741 1.20656 1.19191 0.93670 0.85278 1.39506 0.91553 1.44295 1.34168 1.00957 1.51503 1.20157 0.85300 1.00446 0.89890 1.20941 0.98455 0.95094 1.02397 1.21367 0.98953 0.99741 0.95932 1.21341 0.92056 0.94880 0.86389 0.87807 1.46334 1.57714 1.25827 1.06130 1.16796 0.79240 0.84147 0.82084 1.90860 1.45330 1.24798 1.79684 1.21735 1.10686 0.97215 0.93582 1.23254 0.95728 0.93580 0.94241 1.50526 1.38525 1.15678 1.09044 1.23412 0.98671 1.02368 0.73503 1.23480 0.98539 0.99921 0.96683 1.22715 0.94878 1.03531 0.96236 1.23446 0.96463 1.01315 0.97171 1.81937 1.21206 1.14344 0.87591 1.74620 1.07407 1.06524 1.19531 1.23230 0.95258 0.98655 1.02175 1.20255 0.96385 0.88269 0.91906 0.93841 0.97546 0.89226 0.95164 0.87856 0.91819 0.92671 0.76705 0.78172 0.84947 0.88396 0.89305 0.89036 0.89701 0.89661 0.88914 0.93576 0.92466 0.94901 0.95323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.26 9.43 55.49 0.52 -24.73 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 21.97 29.60 -169.99 -5.03 16.94 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -6.78 9.62 -15.06 -0.14 -6.92 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -14.56 2.61 -175.40 -0.46 -15.01 16 10 C 0.17 3.86 5.25 -5.21 -0.03 3.83 16 11 C -0.13 -2.80 5.02 -30.19 -0.15 -2.95 16 12 C -0.12 -2.24 5.34 -28.40 -0.15 -2.39 16 13 C 0.16 3.11 2.22 -68.39 -0.15 2.96 16 14 H 0.10 2.60 6.26 -51.93 -0.33 2.27 16 15 N -0.71 -12.33 4.97 -55.30 -0.27 -12.61 16 16 C 0.59 10.79 7.77 -12.48 -0.10 10.70 16 17 O -0.53 -11.50 16.53 5.28 0.09 -11.42 16 18 C -0.09 -1.40 6.99 -83.55 -0.58 -1.98 16 19 C 0.09 1.05 10.49 -16.83 -0.18 0.87 16 20 N -0.35 -3.70 3.83 -53.77 -0.21 -3.91 16 21 C 0.12 0.77 5.06 -67.12 -0.34 0.43 16 22 C -0.15 -0.66 7.44 -25.92 -0.19 -0.85 16 23 C -0.14 -0.46 8.08 -25.92 -0.21 -0.67 16 24 C -0.15 -0.75 7.88 -25.92 -0.20 -0.96 16 25 N -0.07 -0.97 13.78 60.35 0.83 -0.14 16 26 N -0.21 -3.12 12.04 32.85 0.40 -2.72 16 27 C -0.15 -3.05 5.97 -25.03 -0.15 -3.19 16 28 C 0.16 3.46 5.13 -4.93 -0.03 3.43 16 29 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 31 H 0.09 2.33 6.08 -51.93 -0.32 2.01 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.10 2.62 5.26 -51.93 -0.27 2.35 16 34 H 0.06 1.12 6.28 -51.93 -0.33 0.79 16 35 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 36 H 0.40 6.04 8.16 -40.82 -0.33 5.71 16 37 H 0.20 1.89 6.78 -52.48 -0.36 1.54 16 38 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.47 6.39 -51.93 -0.33 0.14 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 45 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 46 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 47 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 48 H 0.03 0.56 6.89 -51.92 -0.36 0.20 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -32.32 376.80 -8.36 -40.68 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.22 Total: 4.96 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -2.69 Total: 2.28 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.81 Total: -59.12 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.32 -8.36 -40.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052387449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.750 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds