Wall clock time and date at job start Tue Mar 31 2020 18:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48505 * 109.47256 * 274.22681 * 3 2 1 5 5 H 1.48502 * 109.47223 * 34.22548 * 3 2 1 6 6 H 1.48499 * 109.47414 * 154.22826 * 3 2 1 7 7 C 1.38807 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00498 * 160.12366 * 7 2 1 9 9 N 1.36940 * 120.00049 * 340.39492 * 7 2 1 10 10 C 1.50166 * 120.53611 * 336.41201 * 9 7 2 11 11 C 1.46238 * 107.53359 * 109.56355 * 10 9 7 12 12 C 1.52522 * 114.27766 * 58.41072 * 11 10 9 13 13 C 1.50130 * 105.41039 * 270.59178 * 12 11 10 14 14 H 1.08999 * 109.21026 * 337.38294 * 13 12 11 15 15 N 1.46504 * 109.20813 * 218.02877 * 13 12 11 16 16 C 1.34772 * 120.00161 * 154.99656 * 15 13 12 17 17 O 1.21593 * 120.00150 * 0.02562 * 16 15 13 18 18 C 1.47520 * 120.00029 * 179.97438 * 16 15 13 19 19 C 1.36599 * 125.77249 * 180.02562 * 18 16 15 20 20 N 1.34813 * 106.84086 * 179.97438 * 19 18 16 21 21 C 1.46506 * 126.59079 * 179.97438 * 20 19 18 22 22 C 1.53777 * 113.61512 * 12.50358 * 21 20 19 23 23 C 1.53787 * 87.07755 * 220.01702 * 22 21 20 24 24 C 1.53775 * 87.08264 * 25.42933 * 23 22 21 25 25 N 1.40209 * 106.81148 * 359.97438 * 20 19 18 26 26 N 1.28763 * 108.36784 * 359.74984 * 25 20 19 27 27 C 1.54840 * 110.81469 * 97.68512 * 13 12 11 28 28 C 1.43436 * 120.53588 * 156.12456 * 9 7 2 29 29 H 0.97002 * 120.00237 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.84390 * 229.06940 * 10 9 7 31 31 H 1.09003 * 109.84422 * 350.05447 * 10 9 7 32 32 H 1.09004 * 108.51746 * 179.64904 * 11 10 9 33 33 H 1.09000 * 108.52306 * 297.31799 * 11 10 9 34 34 H 1.09003 * 110.25271 * 29.56300 * 12 11 10 35 35 H 1.08997 * 110.24774 * 151.47751 * 12 11 10 36 36 H 0.97001 * 119.99866 * 335.00251 * 15 13 12 37 37 H 1.08005 * 126.57860 * 359.97438 * 19 18 16 38 38 H 1.09006 * 112.84247 * 143.80789 * 21 20 19 39 39 H 1.08995 * 113.61382 * 334.55884 * 22 21 20 40 40 H 1.08997 * 113.61568 * 105.46753 * 22 21 20 41 41 H 1.09004 * 113.61320 * 270.88366 * 23 22 21 42 42 H 1.08998 * 113.61600 * 139.98065 * 23 22 21 43 43 H 1.08994 * 113.62141 * 220.01734 * 24 23 22 44 44 H 1.09008 * 113.61386 * 89.11572 * 24 23 22 45 45 H 1.09005 * 109.35758 * 81.33912 * 27 13 12 46 46 H 1.09007 * 109.35877 * 200.92239 * 27 13 12 47 47 H 1.09004 * 108.15830 * 33.31613 * 28 9 7 48 48 H 1.09008 * 108.15507 * 149.87519 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4084 2.0980 -1.3963 5 1 1.4953 2.6252 0.7875 6 1 3.5896 1.4160 0.6087 7 6 2.0102 -1.2021 -0.0005 8 1 3.0420 -1.2299 -0.3185 9 7 1.3851 -2.3538 0.3969 10 6 0.1904 -2.2992 1.3050 11 6 -0.9805 -2.6801 0.5161 12 6 -0.8879 -4.0658 -0.1146 13 6 -0.2431 -3.8524 -1.4535 14 1 -0.3932 -2.8181 -1.7631 15 7 -0.8647 -4.7443 -2.4355 16 6 -0.8466 -4.4230 -3.7442 17 8 -0.3140 -3.3930 -4.1100 18 6 -1.4721 -5.3214 -4.7331 19 6 -1.5217 -5.1131 -6.0822 20 7 -2.1759 -6.1642 -6.6159 21 6 -2.4720 -6.3798 -8.0344 22 6 -1.7069 -5.4331 -8.9742 23 6 -3.0006 -5.3345 -9.7998 24 6 -3.7585 -5.6831 -8.5080 25 7 -2.5183 -7.0112 -5.5523 26 7 -2.0835 -6.4867 -4.4597 27 6 1.2753 -4.1479 -1.3863 28 6 1.8571 -3.6316 -0.0525 29 1 -0.4850 0.8400 -0.0004 30 1 0.3222 -2.9967 2.1322 31 1 0.0641 -1.2872 1.6898 32 1 -1.8577 -2.6519 1.1626 33 1 -1.1148 -1.9479 -0.2801 34 1 -0.2710 -4.7202 0.5012 35 1 -1.8837 -4.4920 -0.2367 36 1 -1.2894 -5.5662 -2.1437 37 1 -1.1149 -4.2684 -6.6184 38 1 -2.4111 -7.4287 -8.3247 39 1 -1.4157 -4.4934 -8.5050 40 1 -0.8857 -5.9146 -9.5051 41 1 -3.0836 -6.0972 -10.5741 42 1 -3.2070 -4.3302 -10.1697 43 1 -4.5935 -6.3664 -8.6625 44 1 -4.0282 -4.8117 -7.9113 45 1 1.4378 -5.2231 -1.4610 46 1 1.7774 -3.6501 -2.2160 47 1 2.9404 -3.5753 -0.1591 48 1 1.6351 -4.3669 0.7210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052387449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:57 Heat of formation + Delta-G solvation = 91.796507 kcal Electronic energy + Delta-G solvation = -29058.957189 eV Core-core repulsion = 25151.921375 eV Total energy + Delta-G solvation = -3907.035815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.35699 -40.87383 -39.77887 -39.15689 -36.25783 -34.36635 -33.83243 -33.30851 -32.30136 -31.26179 -28.03618 -27.08399 -26.83485 -25.76600 -25.28293 -23.89298 -23.32717 -21.97700 -21.34218 -20.73739 -20.55529 -19.26831 -18.55941 -17.47260 -17.21518 -17.11940 -16.87896 -16.44565 -16.08375 -15.82212 -15.68613 -15.43167 -15.18742 -14.95644 -14.27707 -14.01577 -13.90291 -13.78704 -13.53219 -13.48310 -13.28502 -13.19888 -13.11332 -12.93050 -12.66104 -12.34679 -12.13020 -12.09177 -11.92311 -11.86099 -11.74701 -11.56820 -11.51494 -11.17561 -11.15319 -11.08965 -11.08147 -10.43574 -10.40201 -9.91373 -8.60443 -7.78931 -5.19154 0.07460 0.58697 1.02360 1.47608 1.49703 1.58760 2.17704 2.23525 2.57391 3.04937 3.14303 3.34019 3.36618 3.62067 3.65343 3.73173 3.74263 3.87834 4.04805 4.11874 4.13807 4.35652 4.43835 4.51223 4.58277 4.65072 4.67544 4.74400 4.77496 4.88581 4.90403 4.92242 4.92508 5.04082 5.08641 5.21389 5.26222 5.31350 5.32293 5.43115 5.49195 5.53152 5.67222 5.71084 5.80489 6.22072 6.46380 6.49831 6.88078 7.21698 7.23037 7.96355 8.45023 9.25276 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017246 B = 0.002657 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.218919 B =10535.866239 C =11441.670933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.044 4.044 3 Si 0.956 3.044 4 H -0.295 1.295 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.260 4.260 8 H 0.059 0.941 9 N -0.602 5.602 10 C 0.168 3.832 11 C -0.123 4.123 12 C -0.108 4.108 13 C 0.169 3.831 14 H 0.048 0.952 15 N -0.701 5.701 16 C 0.595 3.405 17 O -0.575 6.575 18 C -0.117 4.117 19 C 0.103 3.897 20 N -0.335 5.335 21 C 0.105 3.895 22 C -0.146 4.146 23 C -0.122 4.122 24 C -0.146 4.146 25 N -0.084 5.084 26 N -0.221 5.221 27 C -0.140 4.140 28 C 0.157 3.843 29 H 0.245 0.755 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.413 0.587 37 H 0.223 0.777 38 H 0.151 0.849 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.023 0.977 47 H 0.029 0.971 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 -15.685 -17.631 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.240 4.240 3 Si 0.785 3.215 4 H -0.222 1.222 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.390 4.390 8 H 0.076 0.924 9 N -0.324 5.324 10 C 0.044 3.956 11 C -0.162 4.162 12 C -0.146 4.146 13 C 0.065 3.935 14 H 0.067 0.933 15 N -0.352 5.352 16 C 0.379 3.621 17 O -0.454 6.454 18 C -0.257 4.257 19 C -0.055 4.055 20 N -0.120 5.120 21 C 0.006 3.994 22 C -0.184 4.184 23 C -0.160 4.160 24 C -0.185 4.185 25 N -0.064 5.064 26 N -0.094 5.094 27 C -0.182 4.182 28 C 0.028 3.972 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.249 0.751 37 H 0.239 0.761 38 H 0.168 0.832 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.042 0.958 47 H 0.047 0.953 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.198 -16.155 -17.462 25.161 hybrid contribution 0.641 1.816 -0.316 1.952 sum -7.557 -14.339 -17.778 24.057 Atomic orbital electron populations 1.70140 1.05879 1.25027 1.55063 1.25531 0.96026 1.00710 1.01743 0.85446 0.78403 0.80754 0.76884 1.22232 1.21708 1.19879 1.19374 0.93604 0.86744 1.39313 0.92372 1.44461 1.34522 1.01343 1.52033 1.20114 0.85551 0.99319 0.90566 1.20750 0.98354 0.95941 1.01154 1.21277 1.00660 0.98154 0.94531 1.20917 0.92367 0.92512 0.87693 0.93345 1.46144 1.57429 1.25862 1.05719 1.17151 0.78473 0.83869 0.82562 1.90833 1.47361 1.26821 1.80398 1.21380 1.12655 0.97639 0.94056 1.23537 0.94556 0.94068 0.93362 1.50850 1.36718 1.14340 1.10044 1.24073 1.00122 1.04079 0.71174 1.23536 0.99449 0.99226 0.96195 1.22714 0.93249 1.04426 0.95635 1.23459 0.96356 1.00771 0.97906 1.81845 1.21457 1.15017 0.88035 1.74580 1.07841 1.06507 1.20492 1.23098 0.94974 0.99972 1.00183 1.20383 0.96122 0.87572 0.93139 0.94516 0.94907 0.92493 0.93603 0.92032 0.89781 0.90116 0.75051 0.76054 0.83193 0.88866 0.87898 0.87160 0.89263 0.88839 0.90400 0.90500 0.95785 0.95316 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.29 9.43 21.65 0.20 -53.08 16 2 C -0.04 -2.50 4.91 84.86 0.42 -2.08 16 3 Si 0.96 46.33 29.60 68.60 2.03 48.36 16 4 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.26 -14.62 9.62 84.03 0.81 -13.81 16 8 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 9 N -0.60 -30.03 2.61 -708.86 -1.85 -31.88 16 10 C 0.17 7.80 5.25 83.58 0.44 8.24 16 11 C -0.12 -5.28 5.02 28.35 0.14 -5.13 16 12 C -0.11 -3.81 5.34 29.51 0.16 -3.65 16 13 C 0.17 6.76 2.22 44.69 0.10 6.86 16 14 H 0.05 2.54 6.26 -2.39 -0.01 2.52 16 15 N -0.70 -24.16 4.97 -447.13 -2.22 -26.39 16 16 C 0.59 21.95 7.77 86.69 0.67 22.62 16 17 O -0.58 -25.95 16.53 -4.01 -0.07 -26.02 16 18 C -0.12 -3.52 6.99 40.82 0.29 -3.23 16 19 C 0.10 2.35 10.49 83.85 0.88 3.23 16 20 N -0.33 -6.51 3.83 -324.03 -1.24 -7.75 16 21 C 0.11 1.08 5.06 45.51 0.23 1.31 16 22 C -0.15 -0.92 7.44 31.12 0.23 -0.69 16 23 C -0.12 -0.48 8.08 31.12 0.25 -0.23 16 24 C -0.15 -1.21 7.88 31.12 0.25 -0.96 16 25 N -0.08 -2.17 13.78 37.02 0.51 -1.66 16 26 N -0.22 -6.46 12.04 -49.99 -0.60 -7.06 16 27 C -0.14 -5.62 5.97 31.70 0.19 -5.43 16 28 C 0.16 6.58 5.13 87.42 0.45 7.02 16 29 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.03 1.35 8.13 -2.39 -0.02 1.33 16 31 H 0.06 3.02 6.08 -2.39 -0.01 3.01 16 32 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.06 3.23 5.26 -2.39 -0.01 3.22 16 34 H 0.08 2.65 6.28 -2.39 -0.01 2.64 16 35 H 0.08 2.44 7.86 -2.39 -0.02 2.42 16 36 H 0.41 11.94 8.16 -92.71 -0.76 11.18 16 37 H 0.22 3.96 6.78 -2.91 -0.02 3.94 16 38 H 0.15 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.09 0.71 6.39 -2.39 -0.02 0.70 16 40 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 42 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.08 2.59 8.13 -2.38 -0.02 2.57 16 46 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.03 1.22 7.99 -2.39 -0.02 1.20 16 48 H 0.06 2.09 6.89 -2.38 -0.02 2.08 16 Total: -1.00 -73.57 376.80 2.49 -71.08 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.23 Total: 20.36 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.50 Total: 14.06 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -5.20 Total: -127.83 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.07 Total: -26.02 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -73.57 2.49 -71.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052387449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.877 kcal (2) G-P(sol) polarization free energy of solvation -73.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds