Wall clock time and date at job start Tue Mar 31 2020 18:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00206 * 2 1 4 4 H 1.48502 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47225 * 300.00237 * 3 2 1 6 6 H 1.48500 * 109.47037 * 60.00302 * 3 2 1 7 7 C 1.38814 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00412 * 195.65225 * 7 2 1 9 9 N 1.36936 * 119.99941 * 15.66115 * 7 2 1 10 10 C 1.47604 * 118.64643 * 26.48284 * 9 7 2 11 11 C 1.53920 * 112.16172 * 137.87714 * 10 9 7 12 12 C 1.50878 * 110.08385 * 319.41712 * 11 10 9 13 13 C 1.52565 * 109.35716 * 91.88934 * 12 11 10 14 14 H 1.09004 * 108.51352 * 36.24513 * 13 12 11 15 15 N 1.46507 * 108.50992 * 153.89012 * 13 12 11 16 16 C 1.34785 * 119.99692 * 205.00150 * 15 13 12 17 17 O 1.21275 * 120.00048 * 359.97438 * 16 15 13 18 18 C 1.50696 * 119.99935 * 179.97438 * 16 15 13 19 19 N 1.46494 * 109.47391 * 180.02562 * 18 16 15 20 20 C 1.35309 * 125.87116 * 124.71345 * 19 18 16 21 21 C 1.35354 * 106.17686 * 179.90355 * 20 19 18 22 22 C 1.50696 * 126.75246 * 180.12483 * 21 20 19 23 23 C 1.52999 * 117.50092 * 343.99614 * 22 21 20 24 24 C 1.53002 * 117.50151 * 275.33616 * 22 21 20 25 25 N 1.33774 * 106.49518 * 0.35726 * 21 20 19 26 26 N 1.28630 * 108.88397 * 359.76816 * 25 21 20 27 27 C 1.47092 * 114.32670 * 274.98248 * 13 12 11 28 28 C 1.44575 * 118.64466 * 206.46168 * 9 7 2 29 29 H 0.97000 * 119.99537 * 359.97438 * 1 2 3 30 30 H 1.08994 * 108.94990 * 258.55881 * 10 9 7 31 31 H 1.09006 * 108.94816 * 17.27423 * 10 9 7 32 32 H 1.08999 * 109.36632 * 199.23457 * 11 10 9 33 33 H 1.08998 * 109.37708 * 79.61000 * 11 10 9 34 34 H 1.09005 * 109.49310 * 331.92611 * 12 11 10 35 35 H 1.09002 * 109.49308 * 211.85495 * 12 11 10 36 36 H 0.96991 * 120.00172 * 24.99776 * 15 13 12 37 37 H 1.09002 * 109.47464 * 300.00538 * 18 16 15 38 38 H 1.09001 * 109.47045 * 59.99892 * 18 16 15 39 39 H 1.07999 * 126.91381 * 0.02562 * 20 19 18 40 40 H 1.08999 * 115.54736 * 129.66418 * 22 21 20 41 41 H 1.09007 * 117.49920 * 0.02562 * 23 22 21 42 42 H 1.09000 * 117.50145 * 145.01475 * 23 22 21 43 43 H 1.08991 * 117.50214 * 214.97925 * 24 22 21 44 44 H 1.08999 * 117.49412 * 359.97438 * 24 22 21 45 45 H 1.09000 * 109.32686 * 183.06498 * 27 13 12 46 46 H 1.08990 * 109.33023 * 302.54508 * 27 13 12 47 47 H 1.09003 * 109.45420 * 150.68391 * 28 9 7 48 48 H 1.09007 * 109.44913 * 30.76376 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0602 -1.2195 0.2529 9 7 1.3636 -2.3662 -0.3191 10 6 0.1791 -2.2995 -1.1972 11 6 0.1702 -3.4255 -2.2467 12 6 1.5611 -3.6364 -2.7920 13 6 2.2700 -4.7076 -1.9688 14 1 1.5391 -5.4637 -1.6818 15 7 3.2880 -5.3425 -2.8096 16 6 3.6972 -6.5981 -2.5402 17 8 3.2231 -7.2022 -1.6015 18 6 4.7439 -7.2515 -3.4053 19 7 5.0131 -8.6034 -2.9095 20 6 4.9314 -9.7441 -3.6327 21 6 5.2622 -10.7498 -2.7894 22 6 5.3236 -12.2191 -3.1186 23 6 4.6347 -12.6848 -4.4029 24 6 4.0196 -13.0156 -3.0408 25 7 5.5189 -10.1834 -1.6050 26 7 5.3624 -8.9109 -1.7094 27 6 2.9227 -4.2028 -0.7511 28 6 1.8696 -3.6098 0.2172 29 1 -0.4849 0.8401 0.0004 30 1 -0.7197 -2.3789 -0.5858 31 1 0.1733 -1.3383 -1.7113 32 1 -0.5004 -3.1544 -3.0620 33 1 -0.1805 -4.3481 -1.7842 34 1 2.1205 -2.7027 -2.7328 35 1 1.4992 -3.9583 -3.8316 36 1 3.6674 -4.8593 -3.5601 37 1 4.3836 -7.3066 -4.4326 38 1 5.6609 -6.6630 -3.3731 39 1 4.6592 -9.8338 -4.6740 40 1 6.2424 -12.7280 -2.8273 41 1 4.1374 -11.9283 -5.0101 42 1 5.1001 -13.5004 -4.9564 43 1 4.0805 -14.0487 -2.6988 44 1 3.1174 -12.4769 -2.7512 45 1 3.4467 -5.0210 -0.2571 46 1 3.6409 -3.4287 -1.0212 47 1 1.0473 -4.3155 0.3354 48 1 2.3316 -3.4256 1.1872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052439341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:39 Heat of formation + Delta-G solvation = 119.233390 kcal Electronic energy + Delta-G solvation = -28610.551293 eV Core-core repulsion = 24704.705231 eV Total energy + Delta-G solvation = -3905.846062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.44822 -40.10492 -37.88960 -37.52069 -34.99448 -34.55995 -32.61672 -31.68368 -30.90622 -30.40495 -28.60074 -26.09061 -24.34994 -24.16160 -23.48571 -22.93497 -22.08481 -21.01631 -20.41140 -20.10634 -19.26204 -17.84432 -17.66254 -16.71807 -16.43514 -15.81627 -15.65583 -15.37713 -15.14779 -14.89170 -14.69763 -14.09872 -13.94325 -13.66270 -13.47075 -13.15060 -12.79895 -12.65663 -12.49694 -12.01508 -11.91138 -11.72107 -11.46980 -11.40205 -11.29310 -11.04713 -10.89293 -10.78766 -10.58408 -10.55903 -10.41967 -10.31199 -10.15032 -9.96500 -9.79881 -9.71071 -9.61320 -9.21799 -8.99719 -8.42491 -6.68322 -5.79890 -3.23448 1.37352 1.94941 2.35592 2.39014 3.04325 3.33975 3.42702 3.43469 3.44299 3.92174 4.20831 4.38489 4.48092 4.48579 4.51181 4.52874 4.60186 4.89365 5.06020 5.08793 5.26124 5.31138 5.39155 5.48013 5.54608 5.56388 5.62067 5.73150 5.81904 5.94043 5.95581 6.00608 6.08131 6.22055 6.28389 6.41206 6.43857 6.58406 6.69351 6.71966 6.78560 6.87648 7.01197 7.38947 7.41234 7.68247 7.81374 8.06339 8.41100 8.45638 9.22759 9.89492 10.34708 11.27566 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.002142 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.983276 B =13066.363218 C =13316.845838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.141 4.141 12 C -0.111 4.111 13 C 0.165 3.835 14 H 0.072 0.928 15 N -0.721 5.721 16 C 0.497 3.503 17 O -0.509 6.509 18 C 0.094 3.906 19 N -0.279 5.279 20 C -0.051 4.051 21 C 0.008 3.992 22 C -0.071 4.071 23 C -0.171 4.171 24 C -0.165 4.165 25 N -0.265 5.265 26 N -0.047 5.047 27 C -0.156 4.156 28 C 0.163 3.837 29 H 0.252 0.748 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.397 0.603 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.188 0.812 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.486 -19.181 -15.491 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.052 3.948 11 C -0.180 4.180 12 C -0.149 4.149 13 C 0.063 3.937 14 H 0.090 0.910 15 N -0.373 5.373 16 C 0.279 3.721 17 O -0.383 6.383 18 C -0.032 4.032 19 N -0.073 5.073 20 C -0.201 4.201 21 C -0.129 4.129 22 C -0.091 4.091 23 C -0.208 4.208 24 C -0.203 4.203 25 N -0.132 5.132 26 N -0.026 5.026 27 C -0.198 4.198 28 C 0.034 3.966 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.231 0.769 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.205 0.795 40 H 0.139 0.861 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.302 -18.900 -13.371 24.595 hybrid contribution 0.348 0.998 -1.604 1.921 sum 8.650 -17.902 -14.975 24.891 Atomic orbital electron populations 1.70082 1.05191 1.25269 1.54300 1.25041 0.95269 0.98339 1.00876 0.86268 0.79358 0.84161 0.77255 1.20323 1.21657 1.21753 1.19245 0.92415 0.84923 1.42027 0.91673 1.43696 1.32344 1.01868 1.53298 1.21018 0.88703 0.95474 0.89595 1.21975 0.95006 1.01091 0.99962 1.21244 0.97760 0.99133 0.96729 1.20099 0.88642 0.94493 0.90438 0.90950 1.46429 1.43053 1.14231 1.33579 1.20131 0.83415 0.82787 0.85785 1.90843 1.55457 1.63211 1.28808 1.21945 1.01857 0.79839 0.99518 1.46735 1.44461 1.07547 1.08531 1.23209 1.10901 0.85130 1.00822 1.20983 1.05915 0.95430 0.90581 1.19983 0.98208 0.88222 1.02660 1.23025 1.03693 1.03481 0.90632 1.23022 0.96507 1.00868 0.99887 1.75101 1.17900 0.98935 1.21294 1.78499 1.15039 1.09260 0.99849 1.21875 1.00868 1.00086 0.96944 1.20559 0.93845 0.88223 0.94020 0.93746 0.95659 0.90659 0.92464 0.93433 0.89902 0.93151 0.76897 0.84917 0.85307 0.79498 0.86068 0.88648 0.87968 0.88047 0.88570 0.92599 0.91868 0.94828 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 11.01 55.49 0.61 -24.98 16 2 C 0.00 0.09 4.87 -17.43 -0.08 0.00 16 3 Si 0.90 21.23 29.58 -169.99 -5.03 16.20 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.26 -6.76 9.44 -15.06 -0.14 -6.90 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.09 2.27 -172.10 -0.39 -14.48 16 10 C 0.18 4.03 4.66 -2.96 -0.01 4.02 16 11 C -0.14 -2.47 5.71 -27.32 -0.16 -2.62 16 12 C -0.11 -1.70 4.97 -28.02 -0.14 -1.84 16 13 C 0.17 2.56 1.93 -70.98 -0.14 2.42 16 14 H 0.07 1.27 6.81 -51.93 -0.35 0.91 16 15 N -0.72 -8.29 4.94 -56.81 -0.28 -8.57 16 16 C 0.50 6.21 7.58 -10.98 -0.08 6.13 16 17 O -0.51 -9.13 14.84 5.56 0.08 -9.05 16 18 C 0.09 0.74 6.94 -5.20 -0.04 0.70 16 19 N -0.28 -3.23 3.20 -62.45 -0.20 -3.43 16 20 C -0.05 -0.48 10.89 -17.05 -0.19 -0.67 16 21 C 0.01 0.09 6.88 -82.78 -0.57 -0.48 16 22 C -0.07 -0.60 6.33 -91.77 -0.58 -1.18 16 23 C -0.17 -0.97 10.03 -26.69 -0.27 -1.24 16 24 C -0.17 -1.22 10.24 -26.69 -0.27 -1.50 16 25 N -0.27 -4.12 12.41 33.29 0.41 -3.71 16 26 N -0.05 -0.74 12.13 60.35 0.73 -0.01 16 27 C -0.16 -2.81 5.16 -28.58 -0.15 -2.95 16 28 C 0.16 3.42 5.65 -4.09 -0.02 3.40 16 29 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 31 H 0.08 1.90 6.33 -51.93 -0.33 1.57 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.82 7.32 -51.93 -0.38 0.44 16 34 H 0.08 1.46 7.48 -51.93 -0.39 1.07 16 35 H 0.05 0.63 8.05 -51.93 -0.42 0.21 16 36 H 0.40 3.15 8.56 -40.82 -0.35 2.80 16 37 H 0.13 0.43 8.07 -51.93 -0.42 0.01 16 38 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.19 0.94 7.44 -52.49 -0.39 0.55 16 40 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 0.47 7.22 -51.93 -0.38 0.09 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.04 7.45 -51.93 -0.39 0.65 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 48 H 0.05 1.09 7.99 -51.92 -0.41 0.67 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -35.36 384.98 -8.65 -44.00 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.55 Total: 0.94 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.84 Total: -2.71 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.88 Total: -55.19 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.36 -8.65 -44.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052439341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.237 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds