Wall clock time and date at job start Tue Mar 31 2020 18:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00343 * 2 1 4 4 H 1.48491 * 109.47722 * 239.99980 * 3 2 1 5 5 H 1.48500 * 109.47240 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47034 * 119.99906 * 3 2 1 7 7 C 1.38819 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99450 * 160.40868 * 7 2 1 9 9 N 1.36932 * 120.00015 * 340.40877 * 7 2 1 10 10 C 1.50168 * 120.54024 * 336.70734 * 9 7 2 11 11 C 1.46237 * 107.53676 * 109.56339 * 10 9 7 12 12 C 1.52529 * 114.27242 * 58.40972 * 11 10 9 13 13 C 1.50131 * 105.41535 * 270.59437 * 12 11 10 14 14 H 1.09007 * 109.20770 * 337.38302 * 13 12 11 15 15 N 1.46501 * 109.20795 * 218.03266 * 13 12 11 16 16 C 1.34772 * 120.00052 * 155.00503 * 15 13 12 17 17 O 1.21282 * 120.00332 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99881 * 179.97438 * 16 15 13 19 19 N 1.46503 * 109.47351 * 179.97438 * 18 16 15 20 20 C 1.35312 * 125.86467 * 124.99358 * 19 18 16 21 21 C 1.35358 * 106.17407 * 180.02562 * 20 19 18 22 22 C 1.50698 * 126.75274 * 180.02562 * 21 20 19 23 23 C 1.52991 * 117.51982 * 16.27890 * 22 21 20 24 24 C 1.52995 * 60.00276 * 107.48468 * 23 22 21 25 25 N 1.33770 * 106.49239 * 0.26235 * 21 20 19 26 26 N 1.28633 * 108.88920 * 359.56561 * 25 21 20 27 27 C 1.54838 * 110.81287 * 97.68671 * 13 12 11 28 28 C 1.43435 * 120.53765 * 156.68401 * 9 7 2 29 29 H 0.97004 * 119.99326 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.84298 * 350.05528 * 10 9 7 31 31 H 1.09006 * 109.90041 * 229.10789 * 10 9 7 32 32 H 1.08997 * 108.52230 * 297.16798 * 11 10 9 33 33 H 1.09000 * 108.39942 * 179.55964 * 11 10 9 34 34 H 1.08998 * 110.24626 * 151.62182 * 12 11 10 35 35 H 1.08997 * 110.25116 * 29.57218 * 12 11 10 36 36 H 0.97005 * 119.99977 * 334.99240 * 15 13 12 37 37 H 1.08998 * 109.47452 * 59.99383 * 18 16 15 38 38 H 1.09003 * 109.47028 * 299.99511 * 18 16 15 39 39 H 1.08002 * 126.91869 * 359.97438 * 20 19 18 40 40 H 1.09001 * 115.54616 * 230.57895 * 22 21 20 41 41 H 1.09002 * 117.50409 * 214.97392 * 23 22 21 42 42 H 1.09009 * 117.50140 * 359.97438 * 23 22 21 43 43 H 1.08999 * 117.50061 * 252.51607 * 24 23 22 44 44 H 1.08994 * 117.50158 * 107.48498 * 24 23 22 45 45 H 1.08995 * 109.35797 * 81.34037 * 27 13 12 46 46 H 1.09008 * 109.35337 * 200.92944 * 27 13 12 47 47 H 1.08997 * 108.15749 * 33.30387 * 28 9 7 48 48 H 1.08992 * 108.15861 * 150.08249 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0433 -1.2291 -0.3142 9 7 1.3850 -2.3539 0.3966 10 6 0.1861 -2.2991 1.2992 11 6 -0.9807 -2.6835 0.5058 12 6 -0.8831 -4.0704 -0.1214 13 6 -0.2325 -3.8591 -1.4578 14 1 -0.3828 -2.8257 -1.7704 15 7 -0.8483 -4.7542 -2.4406 16 6 -0.8246 -4.4358 -3.7500 17 8 -0.2938 -3.4082 -4.1147 18 6 -1.4576 -5.3569 -4.7609 19 7 -1.3002 -4.7910 -6.1030 20 6 -0.7387 -5.4136 -7.1651 21 6 -0.7994 -4.5348 -8.1928 22 6 -0.3029 -4.7554 -9.5984 23 6 -0.0169 -6.1953 -10.0293 24 6 -1.2430 -5.4622 -10.5770 25 7 -1.3820 -3.4300 -7.7138 26 7 -1.6717 -3.6159 -6.4744 27 6 1.2860 -4.1522 -1.3829 28 6 1.8642 -3.6323 -0.0432 29 1 -0.4849 0.8401 0.0004 30 1 0.0565 -1.2864 1.6811 31 1 0.3145 -2.9938 2.1293 32 1 -1.1141 -1.9517 -0.2909 33 1 -1.8593 -2.6560 1.1504 34 1 -1.8778 -4.4974 -0.2493 35 1 -0.2681 -4.7225 0.4988 36 1 -1.2731 -5.5761 -2.1489 37 1 -2.5183 -5.4690 -4.5363 38 1 -0.9721 -6.3319 -4.7182 39 1 -0.3246 -6.4108 -7.1881 40 1 0.3430 -3.9731 -9.9970 41 1 0.8171 -6.3604 -10.7114 42 1 -0.1874 -6.9835 -9.2958 43 1 -2.2205 -5.7679 -10.2040 44 1 -1.2156 -5.1448 -11.6194 45 1 1.4505 -5.2273 -1.4545 46 1 1.7911 -3.6555 -2.2114 47 1 2.9482 -3.5734 -0.1412 48 1 1.6346 -4.3655 0.7298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052439342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:43 Heat of formation + Delta-G solvation = 127.899366 kcal Electronic energy + Delta-G solvation = -29027.873937 eV Core-core repulsion = 25122.403660 eV Total energy + Delta-G solvation = -3905.470277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.31525 -39.78630 -37.84445 -37.46108 -34.80704 -34.40070 -32.37343 -31.60146 -30.78509 -30.26874 -28.50575 -26.11727 -24.23278 -24.10177 -23.34312 -22.79577 -21.90245 -20.89251 -20.43218 -19.80606 -19.18792 -17.66663 -17.48884 -16.68596 -16.00293 -15.92070 -15.57569 -15.16171 -14.87647 -14.71980 -14.63225 -14.22798 -13.82945 -13.65723 -13.23423 -12.95142 -12.55596 -12.37745 -12.27205 -11.91170 -11.85520 -11.61432 -11.50455 -11.28506 -11.24262 -10.97061 -10.77527 -10.66095 -10.53873 -10.40698 -10.33593 -10.22318 -10.06559 -9.78019 -9.54309 -9.49672 -9.37317 -9.09575 -8.70159 -8.37443 -6.70147 -5.75769 -3.14688 1.50676 2.09431 2.48633 2.61813 3.24006 3.44745 3.50334 3.51260 3.52750 4.02419 4.32598 4.55179 4.56329 4.58192 4.62059 4.62215 4.68047 5.01493 5.17656 5.31751 5.32114 5.39350 5.50844 5.53534 5.64584 5.67702 5.79195 5.80012 5.90445 5.95402 6.05956 6.19853 6.23111 6.35458 6.40893 6.42119 6.64977 6.78627 6.85037 6.90048 6.95699 7.05532 7.18866 7.57818 7.64327 7.77379 7.97458 8.31744 8.45865 8.54622 9.22257 9.89498 10.41152 11.32088 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.002725 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.529082 B =10273.883043 C =11234.222769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.120 4.120 13 C 0.157 3.843 14 H 0.104 0.896 15 N -0.722 5.722 16 C 0.492 3.508 17 O -0.498 6.498 18 C 0.094 3.906 19 N -0.279 5.279 20 C -0.052 4.052 21 C 0.007 3.993 22 C -0.069 4.069 23 C -0.171 4.171 24 C -0.166 4.166 25 N -0.266 5.266 26 N -0.045 5.045 27 C -0.151 4.151 28 C 0.162 3.838 29 H 0.253 0.747 30 H 0.091 0.909 31 H 0.006 0.994 32 H 0.103 0.897 33 H 0.030 0.970 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.392 0.608 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.188 0.812 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.034 0.966 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.680 -19.570 -11.199 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.169 4.169 12 C -0.158 4.158 13 C 0.054 3.946 14 H 0.122 0.878 15 N -0.374 5.374 16 C 0.274 3.726 17 O -0.370 6.370 18 C -0.031 4.031 19 N -0.072 5.072 20 C -0.202 4.202 21 C -0.130 4.130 22 C -0.089 4.089 23 C -0.208 4.208 24 C -0.203 4.203 25 N -0.132 5.132 26 N -0.024 5.024 27 C -0.193 4.193 28 C 0.032 3.968 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.024 0.976 32 H 0.122 0.878 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.226 0.774 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.205 0.795 40 H 0.140 0.860 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.052 -17.285 -10.955 21.079 hybrid contribution 0.673 -0.728 -0.161 1.005 sum -4.379 -18.013 -11.116 21.615 Atomic orbital electron populations 1.69935 1.05084 1.25431 1.53944 1.24889 0.95250 0.98258 1.00964 0.86386 0.79001 0.83546 0.77977 1.21004 1.21696 1.21222 1.19138 0.93650 0.85279 1.40072 0.91575 1.44262 1.33739 1.00883 1.52011 1.20168 0.85216 1.00617 0.89869 1.20940 0.98551 0.94946 1.02480 1.21366 0.98697 0.99926 0.95858 1.21357 0.92107 0.94864 0.86231 0.87760 1.46428 1.59054 1.25877 1.06058 1.20127 0.81513 0.87210 0.83794 1.90907 1.42676 1.24391 1.79034 1.21951 1.05134 0.97861 0.78182 1.46746 1.39281 1.11445 1.09740 1.23192 1.07372 1.02318 0.87286 1.20972 1.04449 0.91568 0.95997 1.19981 1.03215 0.96647 0.89046 1.23010 1.00186 0.94020 1.03621 1.22990 0.95145 1.03369 0.98822 1.75103 1.14623 1.22209 1.01307 1.78519 1.17879 0.98771 1.07279 1.23317 0.95170 0.98405 1.02453 1.20347 0.96423 0.88278 0.91718 0.93649 0.89100 0.97570 0.87848 0.95082 0.92762 0.91780 0.77446 0.85573 0.85073 0.79545 0.86026 0.87991 0.88657 0.88734 0.88142 0.93740 0.92618 0.94801 0.95301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.32 9.42 55.49 0.52 -24.79 16 2 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 3 Si 0.90 22.25 29.60 -169.99 -5.03 17.22 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.25 -6.90 9.63 -15.06 -0.14 -7.04 16 8 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -14.24 2.60 -175.08 -0.46 -14.69 16 10 C 0.16 3.73 5.24 -5.20 -0.03 3.70 16 11 C -0.13 -2.67 5.02 -30.19 -0.15 -2.82 16 12 C -0.12 -1.98 5.34 -28.40 -0.15 -2.13 16 13 C 0.16 2.83 2.22 -68.39 -0.15 2.68 16 14 H 0.10 2.53 6.27 -51.93 -0.33 2.20 16 15 N -0.72 -9.66 4.97 -54.25 -0.27 -9.93 16 16 C 0.49 7.39 7.79 -10.99 -0.09 7.30 16 17 O -0.50 -10.78 15.34 5.56 0.09 -10.70 16 18 C 0.09 0.90 6.94 -5.19 -0.04 0.86 16 19 N -0.28 -3.73 3.20 -62.44 -0.20 -3.93 16 20 C -0.05 -0.58 10.89 -17.04 -0.19 -0.76 16 21 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 22 C -0.07 -0.68 6.33 -91.78 -0.58 -1.26 16 23 C -0.17 -1.13 10.02 -26.74 -0.27 -1.39 16 24 C -0.17 -1.26 10.23 -26.73 -0.27 -1.53 16 25 N -0.27 -4.63 12.41 33.29 0.41 -4.21 16 26 N -0.04 -0.80 12.13 60.35 0.73 -0.07 16 27 C -0.15 -2.83 5.98 -24.76 -0.15 -2.98 16 28 C 0.16 3.32 5.18 -4.66 -0.02 3.30 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.09 2.33 6.05 -51.92 -0.31 2.01 16 31 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 32 H 0.10 2.56 5.29 -51.93 -0.27 2.29 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.75 7.85 -51.93 -0.41 0.34 16 35 H 0.06 1.00 6.28 -51.93 -0.33 0.68 16 36 H 0.39 3.46 8.48 -40.82 -0.35 3.11 16 37 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.13 0.62 8.07 -51.93 -0.42 0.20 16 39 H 0.19 1.20 7.45 -52.49 -0.39 0.81 16 40 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.52 7.23 -51.92 -0.38 0.15 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 46 H 0.05 1.22 8.14 -51.92 -0.42 0.79 16 47 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 48 H 0.03 0.53 6.88 -51.93 -0.36 0.17 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -36.18 380.88 -8.65 -44.83 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.30 Total: 3.04 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.88 Total: -2.50 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.74 Total: -57.63 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.18 -8.65 -44.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052439342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.733 kcal (2) G-P(sol) polarization free energy of solvation -36.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds