Wall clock time and date at job start Tue Mar 31 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00343 * 2 1 4 4 H 1.48491 * 109.47722 * 239.99980 * 3 2 1 5 5 H 1.48500 * 109.47240 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47034 * 119.99906 * 3 2 1 7 7 C 1.38819 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99450 * 160.40868 * 7 2 1 9 9 N 1.36932 * 120.00015 * 340.40877 * 7 2 1 10 10 C 1.50168 * 120.54024 * 336.70734 * 9 7 2 11 11 C 1.46237 * 107.53676 * 109.56339 * 10 9 7 12 12 C 1.52529 * 114.27242 * 58.40972 * 11 10 9 13 13 C 1.50131 * 105.41535 * 270.59437 * 12 11 10 14 14 H 1.09007 * 109.20770 * 337.38302 * 13 12 11 15 15 N 1.46501 * 109.20795 * 218.03266 * 13 12 11 16 16 C 1.34772 * 120.00052 * 155.00503 * 15 13 12 17 17 O 1.21282 * 120.00332 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99881 * 179.97438 * 16 15 13 19 19 N 1.46503 * 109.47351 * 179.97438 * 18 16 15 20 20 C 1.35312 * 125.86467 * 124.99358 * 19 18 16 21 21 C 1.35358 * 106.17407 * 180.02562 * 20 19 18 22 22 C 1.50698 * 126.75274 * 180.02562 * 21 20 19 23 23 C 1.52991 * 117.51982 * 16.27890 * 22 21 20 24 24 C 1.52995 * 60.00276 * 107.48468 * 23 22 21 25 25 N 1.33770 * 106.49239 * 0.26235 * 21 20 19 26 26 N 1.28633 * 108.88920 * 359.56561 * 25 21 20 27 27 C 1.54838 * 110.81287 * 97.68671 * 13 12 11 28 28 C 1.43435 * 120.53765 * 156.68401 * 9 7 2 29 29 H 0.97004 * 119.99326 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.84298 * 350.05528 * 10 9 7 31 31 H 1.09006 * 109.90041 * 229.10789 * 10 9 7 32 32 H 1.08997 * 108.52230 * 297.16798 * 11 10 9 33 33 H 1.09000 * 108.39942 * 179.55964 * 11 10 9 34 34 H 1.08998 * 110.24626 * 151.62182 * 12 11 10 35 35 H 1.08997 * 110.25116 * 29.57218 * 12 11 10 36 36 H 0.97005 * 119.99977 * 334.99240 * 15 13 12 37 37 H 1.08998 * 109.47452 * 59.99383 * 18 16 15 38 38 H 1.09003 * 109.47028 * 299.99511 * 18 16 15 39 39 H 1.08002 * 126.91869 * 359.97438 * 20 19 18 40 40 H 1.09001 * 115.54616 * 230.57895 * 22 21 20 41 41 H 1.09002 * 117.50409 * 214.97392 * 23 22 21 42 42 H 1.09009 * 117.50140 * 359.97438 * 23 22 21 43 43 H 1.08999 * 117.50061 * 252.51607 * 24 23 22 44 44 H 1.08994 * 117.50158 * 107.48498 * 24 23 22 45 45 H 1.08995 * 109.35797 * 81.34037 * 27 13 12 46 46 H 1.09008 * 109.35337 * 200.92944 * 27 13 12 47 47 H 1.08997 * 108.15749 * 33.30387 * 28 9 7 48 48 H 1.08992 * 108.15861 * 150.08249 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0433 -1.2291 -0.3142 9 7 1.3850 -2.3539 0.3966 10 6 0.1861 -2.2991 1.2992 11 6 -0.9807 -2.6835 0.5058 12 6 -0.8831 -4.0704 -0.1214 13 6 -0.2325 -3.8591 -1.4578 14 1 -0.3828 -2.8257 -1.7704 15 7 -0.8483 -4.7542 -2.4406 16 6 -0.8246 -4.4358 -3.7500 17 8 -0.2938 -3.4082 -4.1147 18 6 -1.4576 -5.3569 -4.7609 19 7 -1.3002 -4.7910 -6.1030 20 6 -0.7387 -5.4136 -7.1651 21 6 -0.7994 -4.5348 -8.1928 22 6 -0.3029 -4.7554 -9.5984 23 6 -0.0169 -6.1953 -10.0293 24 6 -1.2430 -5.4622 -10.5770 25 7 -1.3820 -3.4300 -7.7138 26 7 -1.6717 -3.6159 -6.4744 27 6 1.2860 -4.1522 -1.3829 28 6 1.8642 -3.6323 -0.0432 29 1 -0.4849 0.8401 0.0004 30 1 0.0565 -1.2864 1.6811 31 1 0.3145 -2.9938 2.1293 32 1 -1.1141 -1.9517 -0.2909 33 1 -1.8593 -2.6560 1.1504 34 1 -1.8778 -4.4974 -0.2493 35 1 -0.2681 -4.7225 0.4988 36 1 -1.2731 -5.5761 -2.1489 37 1 -2.5183 -5.4690 -4.5363 38 1 -0.9721 -6.3319 -4.7182 39 1 -0.3246 -6.4108 -7.1881 40 1 0.3430 -3.9731 -9.9970 41 1 0.8171 -6.3604 -10.7114 42 1 -0.1874 -6.9835 -9.2958 43 1 -2.2205 -5.7679 -10.2040 44 1 -1.2156 -5.1448 -11.6194 45 1 1.4505 -5.2273 -1.4545 46 1 1.7911 -3.6555 -2.2114 47 1 2.9482 -3.5734 -0.1412 48 1 1.6346 -4.3655 0.7298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052439342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:42 Heat of formation + Delta-G solvation = 101.255666 kcal Electronic energy + Delta-G solvation = -29029.029294 eV Core-core repulsion = 25122.403660 eV Total energy + Delta-G solvation = -3906.625635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.29148 -41.07712 -39.35907 -38.15559 -36.34395 -35.44349 -34.07469 -33.32646 -31.90396 -31.69752 -29.60079 -27.86672 -25.75045 -25.04141 -24.91810 -23.63619 -22.85163 -22.05648 -21.67273 -21.04148 -20.77927 -18.71775 -18.63104 -18.36355 -17.11951 -16.91398 -16.86606 -16.63882 -16.23862 -15.82995 -15.66116 -15.51096 -15.34287 -15.04613 -14.89052 -14.10530 -13.93988 -13.84379 -13.51287 -13.25624 -13.24897 -13.10460 -12.69121 -12.55578 -12.42584 -12.29568 -12.16584 -12.11106 -11.98891 -11.82602 -11.74989 -11.59078 -11.33277 -11.21208 -11.15991 -11.13698 -10.74051 -10.46271 -10.00407 -9.98126 -8.65789 -7.86107 -5.25329 0.57385 1.29355 1.42471 1.43261 1.49187 1.49747 1.50854 2.17431 2.51129 2.89754 3.26590 3.27733 3.58176 3.61876 3.75171 3.89819 3.98652 4.00475 4.04117 4.07339 4.12601 4.30688 4.32802 4.41761 4.49794 4.63198 4.73945 4.79347 4.85946 4.86720 4.89098 4.98591 5.07184 5.17379 5.20356 5.22589 5.28770 5.29500 5.31538 5.39263 5.49996 5.55984 5.64359 5.67287 5.78748 6.20945 6.40336 6.55287 7.17376 7.28168 7.52233 7.91899 8.38280 9.17534 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.002725 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.529082 B =10273.883043 C =11234.222769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.045 4.045 3 Si 0.953 3.047 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.261 4.261 8 H 0.056 0.944 9 N -0.603 5.603 10 C 0.166 3.834 11 C -0.125 4.125 12 C -0.104 4.104 13 C 0.169 3.831 14 H 0.033 0.967 15 N -0.702 5.702 16 C 0.486 3.514 17 O -0.576 6.576 18 C 0.099 3.901 19 N -0.279 5.279 20 C -0.031 4.031 21 C -0.011 4.011 22 C -0.101 4.101 23 C -0.141 4.141 24 C -0.164 4.164 25 N -0.316 5.316 26 N -0.109 5.109 27 C -0.139 4.139 28 C 0.154 3.846 29 H 0.245 0.755 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.422 0.578 37 H 0.162 0.838 38 H 0.196 0.804 39 H 0.242 0.758 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.010 0.990 47 H 0.024 0.976 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 -24.891 -11.028 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.241 4.241 3 Si 0.782 3.218 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.392 4.392 8 H 0.073 0.927 9 N -0.325 5.325 10 C 0.043 3.957 11 C -0.165 4.165 12 C -0.142 4.142 13 C 0.065 3.935 14 H 0.051 0.949 15 N -0.355 5.355 16 C 0.271 3.729 17 O -0.454 6.454 18 C -0.025 4.025 19 N -0.073 5.073 20 C -0.181 4.181 21 C -0.149 4.149 22 C -0.121 4.121 23 C -0.178 4.178 24 C -0.202 4.202 25 N -0.182 5.182 26 N -0.087 5.087 27 C -0.181 4.181 28 C 0.026 3.974 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.261 0.739 37 H 0.179 0.821 38 H 0.213 0.787 39 H 0.258 0.742 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.029 0.971 47 H 0.043 0.957 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.297 -22.667 -10.747 25.639 hybrid contribution 0.785 0.855 -0.235 1.185 sum -4.512 -21.812 -10.982 24.834 Atomic orbital electron populations 1.70129 1.05816 1.25044 1.55002 1.25517 0.96044 1.00725 1.01815 0.85566 0.77824 0.80518 0.77864 1.21594 1.22090 1.20087 1.19305 0.93466 0.86959 1.39420 0.92655 1.44430 1.34144 1.01288 1.52639 1.20127 0.85562 0.99304 0.90665 1.20756 0.98217 0.96488 1.00991 1.21269 1.01070 0.97629 0.94223 1.20776 0.92337 0.92308 0.88095 0.94891 1.46057 1.58274 1.26104 1.05100 1.21129 0.80181 0.86857 0.84781 1.90899 1.46130 1.28035 1.80329 1.22384 1.07361 0.98000 0.74708 1.47075 1.38349 1.10547 1.11289 1.24007 1.04914 1.03573 0.85622 1.21648 1.04241 0.91001 0.98039 1.20055 1.05026 0.98868 0.88181 1.23177 0.99627 0.91849 1.03167 1.23051 0.95355 1.03015 0.98754 1.75004 1.16378 1.24853 1.01934 1.78436 1.20952 1.01488 1.07846 1.23156 0.95082 1.00329 0.99485 1.20522 0.95924 0.87457 0.93531 0.94596 0.92917 0.94610 0.92754 0.93557 0.89079 0.89381 0.73929 0.82052 0.78731 0.74160 0.87239 0.86310 0.86644 0.89147 0.87162 0.89290 0.97142 0.95739 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.42 9.42 21.65 0.20 -54.22 16 2 C -0.04 -2.60 4.91 84.86 0.42 -2.19 16 3 Si 0.95 47.73 29.60 68.60 2.03 49.76 16 4 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 5 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 6 H -0.27 -13.16 7.11 99.48 0.71 -12.46 16 7 C -0.26 -14.86 9.63 84.04 0.81 -14.06 16 8 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 9 N -0.60 -29.66 2.60 -707.83 -1.84 -31.50 16 10 C 0.17 7.55 5.24 83.58 0.44 7.98 16 11 C -0.13 -5.12 5.02 28.36 0.14 -4.98 16 12 C -0.10 -3.11 5.34 29.51 0.16 -2.95 16 13 C 0.17 5.99 2.22 44.69 0.10 6.09 16 14 H 0.03 1.69 6.27 -2.38 -0.01 1.67 16 15 N -0.70 -16.85 4.97 -443.95 -2.21 -19.06 16 16 C 0.49 13.97 7.79 87.66 0.68 14.66 16 17 O -0.58 -26.22 15.34 -3.04 -0.05 -26.26 16 18 C 0.10 1.49 6.94 85.63 0.59 2.08 16 19 N -0.28 -7.00 3.20 -351.45 -1.12 -8.12 16 20 C -0.03 -0.59 10.89 83.49 0.91 0.32 16 21 C -0.01 -0.28 6.88 41.60 0.29 0.00 16 22 C -0.10 -1.91 6.33 -11.54 -0.07 -1.99 16 23 C -0.14 -1.38 10.02 30.59 0.31 -1.08 16 24 C -0.16 -2.23 10.23 30.59 0.31 -1.91 16 25 N -0.32 -11.60 12.41 -48.60 -0.60 -12.20 16 26 N -0.11 -4.02 12.13 37.02 0.45 -3.57 16 27 C -0.14 -5.04 5.98 31.87 0.19 -4.85 16 28 C 0.15 6.15 5.18 87.60 0.45 6.60 16 29 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.05 2.78 6.05 -2.38 -0.01 2.77 16 31 H 0.04 1.40 8.13 -2.38 -0.02 1.38 16 32 H 0.05 2.82 5.29 -2.39 -0.01 2.81 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 2.07 7.85 -2.39 -0.02 2.05 16 35 H 0.09 2.28 6.28 -2.39 -0.01 2.27 16 36 H 0.42 5.14 8.48 -92.70 -0.79 4.36 16 37 H 0.16 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.20 0.43 8.07 -2.39 -0.02 0.41 16 39 H 0.24 1.62 7.45 -2.91 -0.02 1.60 16 40 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.12 0.67 7.23 -2.38 -0.02 0.65 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.09 2.43 8.12 -2.39 -0.02 2.41 16 46 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 47 H 0.02 1.01 7.99 -2.39 -0.02 0.99 16 48 H 0.06 2.11 6.88 -2.39 -0.02 2.10 16 Total: -1.00 -93.45 380.88 2.78 -90.66 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.20 Total: 10.79 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.73 Total: 3.73 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -5.12 Total: -128.68 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.26 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -93.45 2.78 -90.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052439342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.918 kcal (2) G-P(sol) polarization free energy of solvation -93.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds