Wall clock time and date at job start Tue Mar 31 2020 17:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99912 * 2 1 4 4 H 1.48507 * 109.47198 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47225 * 300.00219 * 3 2 1 6 6 H 1.48499 * 109.47280 * 59.99894 * 3 2 1 7 7 C 1.38811 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00183 * 160.39809 * 7 2 1 9 9 N 1.36940 * 119.99831 * 340.39618 * 7 2 1 10 10 C 1.43432 * 120.53695 * 156.69278 * 9 7 2 11 11 C 1.54906 * 116.07621 * 271.58568 * 10 9 7 12 12 C 1.54839 * 110.14142 * 318.64169 * 11 10 9 13 13 C 1.50126 * 110.81561 * 321.13309 * 12 11 10 14 14 H 1.09005 * 110.24881 * 338.70965 * 13 12 11 15 15 N 1.46505 * 110.25075 * 216.80143 * 13 12 11 16 16 C 1.34774 * 119.99998 * 154.99965 * 15 13 12 17 17 O 1.21288 * 119.99879 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00163 * 180.02562 * 16 15 13 19 19 H 1.09007 * 109.68577 * 299.45789 * 18 16 15 20 20 C 1.53425 * 109.69775 * 178.86820 * 18 16 15 21 21 C 1.53108 * 109.55350 * 190.57371 * 20 18 16 22 22 C 1.53415 * 109.57893 * 70.06558 * 21 20 18 23 23 C 1.50594 * 108.33765 * 310.18662 * 22 21 20 24 24 N 1.32908 * 129.16418 * 196.61218 * 23 22 21 25 25 N 1.29025 * 108.63672 * 179.77438 * 24 23 22 26 26 N 1.29109 * 110.25656 * 0.02562 * 25 24 23 27 27 H 0.96996 * 126.00662 * 180.02562 * 26 25 24 28 28 C 1.34397 * 107.98673 * 0.07198 * 26 25 24 29 29 C 1.52523 * 105.41343 * 97.68532 * 13 12 11 30 30 C 1.46239 * 114.27566 * 270.59128 * 29 13 12 31 31 H 0.97000 * 120.00156 * 359.97438 * 1 2 3 32 32 H 1.08997 * 108.16036 * 149.86753 * 10 9 7 33 33 H 1.08997 * 108.16021 * 33.29927 * 10 9 7 34 34 H 1.08997 * 109.35810 * 198.43556 * 11 10 9 35 35 H 1.09004 * 109.35528 * 78.84692 * 11 10 9 36 36 H 1.08998 * 109.21058 * 81.47901 * 12 11 10 37 37 H 1.08997 * 109.20680 * 200.83645 * 12 11 10 38 38 H 0.96997 * 119.99586 * 335.00414 * 15 13 12 39 39 H 1.08999 * 109.45463 * 310.59887 * 20 18 16 40 40 H 1.09004 * 109.45846 * 70.54132 * 20 18 16 41 41 H 1.09004 * 109.45509 * 310.02968 * 21 20 18 42 42 H 1.09004 * 109.43660 * 190.08869 * 21 20 18 43 43 H 1.09003 * 109.69119 * 190.47469 * 22 21 20 44 44 H 1.09002 * 109.72616 * 69.91966 * 22 21 20 45 45 H 1.08995 * 108.52167 * 31.83267 * 29 13 12 46 46 H 1.09004 * 108.52159 * 149.35294 * 29 13 12 47 47 H 1.08998 * 109.84592 * 177.91675 * 30 29 13 48 48 H 1.08995 * 109.84971 * 298.83343 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0434 -1.2291 -0.3143 9 7 1.3851 -2.3539 0.3969 10 6 1.8645 -3.6322 -0.0427 11 6 1.2861 -4.1524 -1.3823 12 6 -0.2325 -3.8595 -1.4570 13 6 -0.8828 -4.0706 -0.1205 14 1 -0.2676 -4.7226 0.4997 15 7 -2.2184 -4.6479 -0.2919 16 6 -2.7723 -5.3715 0.7010 17 8 -2.1649 -5.5452 1.7364 18 6 -4.1459 -5.9658 0.5244 19 1 -4.8714 -5.1700 0.3556 20 6 -4.5309 -6.7600 1.7794 21 6 -5.7974 -7.5745 1.5019 22 6 -5.4735 -8.7115 0.5242 23 6 -4.7315 -8.1298 -0.6501 24 7 -4.5154 -8.6567 -1.8509 25 7 -3.8375 -7.8143 -2.5549 26 7 -3.5954 -6.7492 -1.8665 27 1 -3.1037 -5.9714 -2.1733 28 6 -4.1437 -6.9079 -0.6497 29 6 -0.9804 -2.6836 0.5064 30 6 0.1864 -2.2989 1.2996 31 1 -0.4850 0.8400 0.0004 32 1 1.6384 -4.3646 0.7322 33 1 2.9484 -3.5732 -0.1408 34 1 1.4507 -5.2275 -1.4537 35 1 1.7911 -3.6558 -2.2109 36 1 -0.3835 -2.8265 -1.7702 37 1 -0.6908 -4.5263 -2.1874 38 1 -2.7039 -4.5093 -1.1201 39 1 -3.7170 -7.4341 2.0464 40 1 -4.7158 -6.0704 2.6030 41 1 -6.5576 -6.9263 1.0658 42 1 -6.1707 -7.9942 2.4360 43 1 -6.3982 -9.1755 0.1811 44 1 -4.8508 -9.4565 1.0197 45 1 -1.1140 -1.9521 -0.2904 46 1 -1.8605 -2.6552 1.1489 47 1 0.0568 -1.2862 1.6813 48 1 0.3149 -2.9933 2.1298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052662469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:49 Heat of formation + Delta-G solvation = 77.785702 kcal Electronic energy + Delta-G solvation = -30145.719569 eV Core-core repulsion = 26238.076201 eV Total energy + Delta-G solvation = -3907.643369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.76908 -40.12968 -38.09879 -36.84040 -34.86564 -34.13737 -32.60952 -31.32408 -30.76763 -30.36716 -30.24617 -26.33245 -25.13466 -23.98380 -23.32972 -23.17880 -22.74790 -20.95200 -20.18860 -19.81866 -19.26819 -18.38247 -17.17616 -16.78784 -16.43625 -15.91456 -15.59109 -14.98149 -14.79750 -14.28778 -14.12366 -14.03213 -14.01152 -13.80249 -13.68752 -13.26044 -12.94698 -12.51635 -12.14453 -11.98792 -11.81567 -11.66621 -11.54823 -11.50523 -11.33923 -11.31318 -10.95524 -10.84490 -10.82920 -10.61257 -10.47310 -10.24606 -10.18857 -9.89817 -9.81787 -9.62332 -9.36886 -9.10514 -8.85483 -8.45463 -6.78956 -5.86058 -3.24681 1.23009 2.22938 2.32137 2.60272 3.11574 3.32930 3.42123 3.44014 3.94735 4.11541 4.35144 4.45674 4.49520 4.58418 4.90642 4.95688 4.98992 5.10809 5.24143 5.28691 5.32440 5.45654 5.52249 5.57250 5.61088 5.64593 5.72635 5.75301 5.96313 5.99349 6.04012 6.12740 6.17986 6.30627 6.37803 6.49200 6.51869 6.74766 6.77085 6.82729 6.93818 7.00202 7.11057 7.43610 7.54960 7.66927 7.86314 8.15129 8.19417 8.36182 9.12562 9.80450 10.33428 11.21375 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.002991 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.781769 B = 9358.816653 C = 9841.180761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.154 3.846 11 C -0.140 4.140 12 C -0.113 4.113 13 C 0.143 3.857 14 H 0.089 0.911 15 N -0.724 5.724 16 C 0.513 3.487 17 O -0.518 6.518 18 C -0.034 4.034 19 H 0.119 0.881 20 C -0.098 4.098 21 C -0.119 4.119 22 C -0.035 4.035 23 C -0.006 4.006 24 N -0.258 5.258 25 N -0.081 5.081 26 N -0.379 5.379 27 H 0.445 0.555 28 C -0.009 4.009 29 C -0.132 4.132 30 C 0.168 3.832 31 H 0.251 0.749 32 H 0.029 0.971 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.035 0.965 38 H 0.382 0.618 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.030 0.970 47 H 0.092 0.908 48 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.328 -12.634 0.430 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.309 5.309 10 C 0.025 3.975 11 C -0.181 4.181 12 C -0.151 4.151 13 C 0.041 3.959 14 H 0.107 0.893 15 N -0.375 5.375 16 C 0.297 3.703 17 O -0.393 6.393 18 C -0.058 4.058 19 H 0.136 0.864 20 C -0.136 4.136 21 C -0.157 4.157 22 C -0.075 4.075 23 C -0.146 4.146 24 N -0.124 5.124 25 N -0.060 5.060 26 N -0.100 5.100 27 H 0.292 0.708 28 C -0.144 4.144 29 C -0.171 4.171 30 C 0.044 3.956 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.216 0.784 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.121 0.879 46 H 0.049 0.951 47 H 0.110 0.890 48 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -11.810 -13.430 -0.150 17.885 hybrid contribution 0.351 2.201 -0.078 2.230 sum -11.459 -11.229 -0.228 16.045 Atomic orbital electron populations 1.69956 1.05102 1.25097 1.54583 1.24876 0.95248 0.98184 1.01307 0.86267 0.79462 0.84117 0.77167 1.20410 1.21953 1.21657 1.19268 0.93677 0.85327 1.39282 0.91439 1.44266 1.33752 1.00909 1.52023 1.20431 0.96596 0.88220 0.92291 1.22830 0.94669 0.98513 1.02124 1.21725 0.96359 1.02448 0.94569 1.20620 0.80450 0.96491 0.98377 0.89323 1.46460 1.20124 1.53583 1.17315 1.20270 0.87130 0.78678 0.84201 1.90740 1.62512 1.59100 1.26925 1.20120 0.96597 0.96629 0.92426 0.86362 1.21470 0.98446 0.99170 0.94500 1.21684 0.97567 0.96901 0.99592 1.20029 0.99368 0.97790 0.90265 1.21721 1.04193 0.92705 0.95993 1.74847 1.12078 1.22437 1.03050 1.78605 1.16143 0.91651 1.19601 1.44868 1.38376 1.16976 1.09734 0.70802 1.21509 1.03958 0.99948 0.89027 1.21336 0.98973 0.94357 1.02454 1.20090 0.84898 1.00649 0.89921 0.93851 0.95281 0.94738 0.93689 0.92479 0.89809 0.94591 0.78439 0.89897 0.89551 0.91190 0.89914 0.89523 0.89584 0.87887 0.95143 0.88987 0.97226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.76 9.43 55.49 0.52 -23.23 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 20.90 29.60 -169.99 -5.03 15.87 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -6.38 9.63 -15.06 -0.14 -6.53 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 9 N -0.59 -13.86 2.60 -175.09 -0.46 -14.32 16 10 C 0.15 3.12 5.17 -4.66 -0.02 3.10 16 11 C -0.14 -2.46 6.41 -24.76 -0.16 -2.62 16 12 C -0.11 -1.89 5.30 -27.19 -0.14 -2.03 16 13 C 0.14 2.43 2.23 -69.60 -0.16 2.28 16 14 H 0.09 1.70 5.70 -51.93 -0.30 1.41 16 15 N -0.72 -9.58 4.52 -55.44 -0.25 -9.83 16 16 C 0.51 6.99 7.14 -10.99 -0.08 6.91 16 17 O -0.52 -9.08 15.49 5.55 0.09 -9.00 16 18 C -0.03 -0.33 2.91 -92.78 -0.27 -0.60 16 19 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 20 C -0.10 -0.85 4.66 -26.46 -0.12 -0.98 16 21 C -0.12 -0.76 5.90 -26.46 -0.16 -0.92 16 22 C -0.04 -0.28 6.30 -27.72 -0.17 -0.45 16 23 C -0.01 -0.07 7.11 -83.12 -0.59 -0.66 16 24 N -0.26 -3.52 12.40 33.16 0.41 -3.11 16 25 N -0.08 -1.08 13.40 60.35 0.81 -0.27 16 26 N -0.38 -4.09 6.76 33.39 0.23 -3.86 16 27 H 0.44 3.83 6.82 -190.08 -1.30 2.54 16 28 C -0.01 -0.09 6.38 -82.49 -0.53 -0.62 16 29 C -0.13 -2.66 4.74 -30.19 -0.14 -2.81 16 30 C 0.17 3.85 5.24 -5.21 -0.03 3.82 16 31 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 32 H 0.03 0.57 6.89 -51.93 -0.36 0.21 16 33 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.65 6.83 -51.93 -0.35 1.29 16 37 H 0.04 0.49 7.85 -51.93 -0.41 0.08 16 38 H 0.38 3.93 6.56 -40.82 -0.27 3.66 16 39 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.10 2.35 5.29 -51.93 -0.27 2.07 16 46 H 0.03 0.61 8.02 -51.93 -0.42 0.19 16 47 H 0.09 2.36 6.05 -51.93 -0.31 2.04 16 48 H 0.01 0.22 8.13 -51.93 -0.42 -0.21 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -30.65 364.73 -9.14 -39.80 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -8.15 Total: 4.61 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.80 Total: -2.15 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 1.26 Total: -54.62 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.65 -9.14 -39.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052662469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.583 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds