Wall clock time and date at job start Tue Mar 31 2020 17:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99912 * 2 1 4 4 H 1.48507 * 109.47198 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47225 * 300.00219 * 3 2 1 6 6 H 1.48499 * 109.47280 * 59.99894 * 3 2 1 7 7 C 1.38811 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00183 * 160.39809 * 7 2 1 9 9 N 1.36940 * 119.99831 * 340.39618 * 7 2 1 10 10 C 1.43432 * 120.53695 * 156.69278 * 9 7 2 11 11 C 1.54906 * 116.07621 * 271.58568 * 10 9 7 12 12 C 1.54839 * 110.14142 * 318.64169 * 11 10 9 13 13 C 1.50126 * 110.81561 * 321.13309 * 12 11 10 14 14 H 1.09005 * 110.24881 * 338.70965 * 13 12 11 15 15 N 1.46505 * 110.25075 * 216.80143 * 13 12 11 16 16 C 1.34774 * 119.99998 * 154.99965 * 15 13 12 17 17 O 1.21288 * 119.99879 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00163 * 180.02562 * 16 15 13 19 19 H 1.09007 * 109.68577 * 299.45789 * 18 16 15 20 20 C 1.53425 * 109.69775 * 178.86820 * 18 16 15 21 21 C 1.53108 * 109.55350 * 190.57371 * 20 18 16 22 22 C 1.53415 * 109.57893 * 70.06558 * 21 20 18 23 23 C 1.50594 * 108.33765 * 310.18662 * 22 21 20 24 24 N 1.32908 * 129.16418 * 196.61218 * 23 22 21 25 25 N 1.29025 * 108.63672 * 179.77438 * 24 23 22 26 26 N 1.29109 * 110.25656 * 0.02562 * 25 24 23 27 27 H 0.96996 * 126.00662 * 180.02562 * 26 25 24 28 28 C 1.34397 * 107.98673 * 0.07198 * 26 25 24 29 29 C 1.52523 * 105.41343 * 97.68532 * 13 12 11 30 30 C 1.46239 * 114.27566 * 270.59128 * 29 13 12 31 31 H 0.97000 * 120.00156 * 359.97438 * 1 2 3 32 32 H 1.08997 * 108.16036 * 149.86753 * 10 9 7 33 33 H 1.08997 * 108.16021 * 33.29927 * 10 9 7 34 34 H 1.08997 * 109.35810 * 198.43556 * 11 10 9 35 35 H 1.09004 * 109.35528 * 78.84692 * 11 10 9 36 36 H 1.08998 * 109.21058 * 81.47901 * 12 11 10 37 37 H 1.08997 * 109.20680 * 200.83645 * 12 11 10 38 38 H 0.96997 * 119.99586 * 335.00414 * 15 13 12 39 39 H 1.08999 * 109.45463 * 310.59887 * 20 18 16 40 40 H 1.09004 * 109.45846 * 70.54132 * 20 18 16 41 41 H 1.09004 * 109.45509 * 310.02968 * 21 20 18 42 42 H 1.09004 * 109.43660 * 190.08869 * 21 20 18 43 43 H 1.09003 * 109.69119 * 190.47469 * 22 21 20 44 44 H 1.09002 * 109.72616 * 69.91966 * 22 21 20 45 45 H 1.08995 * 108.52167 * 31.83267 * 29 13 12 46 46 H 1.09004 * 108.52159 * 149.35294 * 29 13 12 47 47 H 1.08998 * 109.84592 * 177.91675 * 30 29 13 48 48 H 1.08995 * 109.84971 * 298.83343 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0434 -1.2291 -0.3143 9 7 1.3851 -2.3539 0.3969 10 6 1.8645 -3.6322 -0.0427 11 6 1.2861 -4.1524 -1.3823 12 6 -0.2325 -3.8595 -1.4570 13 6 -0.8828 -4.0706 -0.1205 14 1 -0.2676 -4.7226 0.4997 15 7 -2.2184 -4.6479 -0.2919 16 6 -2.7723 -5.3715 0.7010 17 8 -2.1649 -5.5452 1.7364 18 6 -4.1459 -5.9658 0.5244 19 1 -4.8714 -5.1700 0.3556 20 6 -4.5309 -6.7600 1.7794 21 6 -5.7974 -7.5745 1.5019 22 6 -5.4735 -8.7115 0.5242 23 6 -4.7315 -8.1298 -0.6501 24 7 -4.5154 -8.6567 -1.8509 25 7 -3.8375 -7.8143 -2.5549 26 7 -3.5954 -6.7492 -1.8665 27 1 -3.1037 -5.9714 -2.1733 28 6 -4.1437 -6.9079 -0.6497 29 6 -0.9804 -2.6836 0.5064 30 6 0.1864 -2.2989 1.2996 31 1 -0.4850 0.8400 0.0004 32 1 1.6384 -4.3646 0.7322 33 1 2.9484 -3.5732 -0.1408 34 1 1.4507 -5.2275 -1.4537 35 1 1.7911 -3.6558 -2.2109 36 1 -0.3835 -2.8265 -1.7702 37 1 -0.6908 -4.5263 -2.1874 38 1 -2.7039 -4.5093 -1.1201 39 1 -3.7170 -7.4341 2.0464 40 1 -4.7158 -6.0704 2.6030 41 1 -6.5576 -6.9263 1.0658 42 1 -6.1707 -7.9942 2.4360 43 1 -6.3982 -9.1755 0.1811 44 1 -4.8508 -9.4565 1.0197 45 1 -1.1140 -1.9521 -0.2904 46 1 -1.8605 -2.6552 1.1489 47 1 0.0568 -1.2862 1.6813 48 1 0.3149 -2.9933 2.1298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052662469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:48 Heat of formation + Delta-G solvation = 57.952122 kcal Electronic energy + Delta-G solvation = -30146.579618 eV Core-core repulsion = 26238.076201 eV Total energy + Delta-G solvation = -3908.503417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.63892 -41.32384 -39.51831 -37.71544 -36.31710 -35.14610 -34.18466 -32.75251 -32.39280 -31.31234 -31.16433 -28.00729 -26.24500 -25.18842 -24.97621 -24.22304 -23.58906 -22.07856 -21.77839 -20.86586 -20.49122 -19.30409 -18.62832 -18.15383 -17.49537 -17.15480 -16.84661 -16.54461 -15.72203 -15.62275 -15.57576 -15.37380 -15.06203 -14.88854 -14.78587 -14.49876 -14.35086 -13.72539 -13.57152 -13.27143 -13.17969 -13.07824 -12.73080 -12.68103 -12.57893 -12.44655 -12.24326 -12.10514 -12.00038 -11.91467 -11.77994 -11.72241 -11.62495 -11.38042 -11.25228 -11.06597 -10.96342 -10.54809 -10.06914 -9.97159 -8.68891 -7.84094 -5.24331 0.36314 1.31436 1.43913 1.45796 1.50672 1.58287 1.63159 2.04263 2.53391 3.16506 3.29007 3.29793 3.51803 3.58218 3.73557 3.90430 3.96237 4.04696 4.17558 4.19377 4.28266 4.32660 4.45121 4.48087 4.58060 4.59600 4.63693 4.82585 4.88877 4.93717 4.98757 5.00538 5.12696 5.15270 5.17377 5.20031 5.27376 5.32819 5.33479 5.46069 5.48515 5.59973 5.62671 5.67883 5.71244 6.06092 6.37262 6.40731 7.07299 7.16227 7.29130 7.88583 8.40146 9.20643 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.002991 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.781769 B = 9358.816653 C = 9841.180761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.039 4.039 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.259 4.259 8 H 0.062 0.938 9 N -0.600 5.600 10 C 0.148 3.852 11 C -0.133 4.133 12 C -0.106 4.106 13 C 0.160 3.840 14 H 0.072 0.928 15 N -0.715 5.715 16 C 0.512 3.488 17 O -0.559 6.559 18 C -0.022 4.022 19 H 0.149 0.851 20 C -0.098 4.098 21 C -0.109 4.109 22 C -0.038 4.038 23 C -0.010 4.010 24 N -0.287 5.287 25 N -0.105 5.105 26 N -0.370 5.370 27 H 0.453 0.547 28 C -0.008 4.008 29 C -0.117 4.117 30 C 0.173 3.827 31 H 0.247 0.753 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.400 0.600 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.026 0.974 47 H 0.060 0.940 48 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.754 -13.613 0.142 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.235 4.235 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.389 4.389 8 H 0.079 0.921 9 N -0.322 5.322 10 C 0.020 3.980 11 C -0.174 4.174 12 C -0.144 4.144 13 C 0.056 3.944 14 H 0.090 0.910 15 N -0.367 5.367 16 C 0.298 3.702 17 O -0.436 6.436 18 C -0.045 4.045 19 H 0.167 0.833 20 C -0.137 4.137 21 C -0.146 4.146 22 C -0.077 4.077 23 C -0.151 4.151 24 N -0.152 5.152 25 N -0.084 5.084 26 N -0.092 5.092 27 H 0.301 0.699 28 C -0.144 4.144 29 C -0.157 4.157 30 C 0.049 3.951 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.236 0.764 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.045 0.955 47 H 0.079 0.921 48 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -13.244 -14.433 -0.483 19.594 hybrid contribution 0.838 2.483 0.075 2.621 sum -12.406 -11.950 -0.408 17.230 Atomic orbital electron populations 1.70086 1.05790 1.25151 1.55010 1.25452 0.96013 1.00407 1.01634 0.85405 0.78580 0.80986 0.76553 1.20033 1.22088 1.22112 1.19415 0.93656 0.86542 1.39285 0.92052 1.44325 1.33924 1.01474 1.52522 1.20546 0.96483 0.86979 0.93983 1.22721 0.94976 0.99956 0.99789 1.21580 0.96088 1.01540 0.95167 1.20142 0.82207 0.94176 0.97872 0.91012 1.46250 1.18977 1.53145 1.18313 1.20948 0.88143 0.77838 0.83259 1.90731 1.63807 1.60473 1.28567 1.20176 0.94446 0.97242 0.92664 0.83318 1.21514 0.99025 0.99113 0.94010 1.21663 0.96441 0.96223 1.00320 1.20220 0.99644 0.98424 0.89373 1.22312 1.04005 0.92722 0.96062 1.74826 1.12948 1.23203 1.04237 1.78559 1.17102 0.92433 1.20300 1.44869 1.37911 1.16759 1.09643 0.69855 1.21651 1.03775 1.00014 0.88976 1.21089 0.97476 0.95910 1.01191 1.19936 0.86076 0.98789 0.90322 0.94312 0.94840 0.95095 0.90915 0.93044 0.92758 0.90801 0.76382 0.91827 0.89015 0.89859 0.87662 0.88166 0.89265 0.90178 0.95485 0.92141 0.97328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.09 9.43 21.65 0.20 -48.89 16 2 C -0.04 -2.05 4.91 84.86 0.42 -1.63 16 3 Si 0.95 43.46 29.60 68.60 2.03 45.49 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 7 C -0.26 -13.63 9.63 84.03 0.81 -12.82 16 8 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 9 N -0.60 -28.73 2.60 -707.85 -1.84 -30.57 16 10 C 0.15 5.98 5.17 87.60 0.45 6.43 16 11 C -0.13 -4.49 6.41 31.87 0.20 -4.29 16 12 C -0.11 -3.37 5.30 30.30 0.16 -3.21 16 13 C 0.16 5.30 2.23 43.91 0.10 5.40 16 14 H 0.07 2.70 5.70 -2.38 -0.01 2.68 16 15 N -0.71 -17.64 4.52 -447.70 -2.03 -19.66 16 16 C 0.51 13.08 7.14 87.66 0.63 13.71 16 17 O -0.56 -19.17 15.49 -3.06 -0.05 -19.21 16 18 C -0.02 -0.37 2.91 -12.20 -0.04 -0.41 16 19 H 0.15 1.69 8.14 -2.38 -0.02 1.67 16 20 C -0.10 -1.48 4.66 30.77 0.14 -1.33 16 21 C -0.11 -1.02 5.90 30.77 0.18 -0.84 16 22 C -0.04 -0.49 6.30 29.95 0.19 -0.30 16 23 C -0.01 -0.21 7.11 41.75 0.30 0.08 16 24 N -0.29 -7.45 12.40 -48.99 -0.61 -8.06 16 25 N -0.11 -2.66 13.40 37.02 0.50 -2.17 16 26 N -0.37 -7.24 6.76 -48.27 -0.33 -7.56 16 27 H 0.45 6.72 6.82 -219.68 -1.50 5.22 16 28 C -0.01 -0.15 6.38 41.50 0.26 0.12 16 29 C -0.12 -4.78 4.74 28.35 0.13 -4.65 16 30 C 0.17 8.11 5.24 83.58 0.44 8.55 16 31 H 0.25 13.05 8.31 -92.71 -0.77 12.28 16 32 H 0.03 1.31 6.89 -2.39 -0.02 1.29 16 33 H 0.03 1.25 7.99 -2.39 -0.02 1.23 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 36 H 0.05 2.10 6.83 -2.39 -0.02 2.09 16 37 H 0.07 1.80 7.85 -2.39 -0.02 1.78 16 38 H 0.40 7.20 6.56 -92.71 -0.61 6.60 16 39 H 0.06 1.23 7.75 -2.39 -0.02 1.21 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 0.61 8.12 -2.38 -0.02 0.59 16 42 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 43 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.08 3.71 5.29 -2.39 -0.01 3.70 16 46 H 0.03 1.09 8.02 -2.38 -0.02 1.07 16 47 H 0.06 3.21 6.05 -2.39 -0.01 3.19 16 48 H 0.01 0.40 8.13 -2.39 -0.02 0.38 16 Total: -1.00 -68.00 364.73 1.16 -66.84 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -1.10 Total: 19.00 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 4.38 Total: 4.80 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -4.10 Total: -116.92 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -68.00 1.16 -66.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052662469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.791 kcal (2) G-P(sol) polarization free energy of solvation -67.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds