Wall clock time and date at job start Tue Mar 31 2020 17:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99966 * 2 1 4 4 H 1.48506 * 109.47088 * 269.99980 * 3 2 1 5 5 H 1.48499 * 109.46909 * 29.99544 * 3 2 1 6 6 H 1.48498 * 109.47432 * 150.00148 * 3 2 1 7 7 C 1.38820 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99943 * 195.69085 * 7 2 1 9 9 N 1.36937 * 119.99538 * 15.68819 * 7 2 1 10 10 C 1.44580 * 118.64251 * 206.51226 * 9 7 2 11 11 C 1.54859 * 109.60132 * 270.73385 * 10 9 7 12 12 C 1.47097 * 110.32080 * 288.72794 * 11 10 9 13 13 C 1.52569 * 114.32357 * 62.80768 * 12 11 10 14 14 H 1.09000 * 109.48993 * 34.97300 * 13 12 11 15 15 N 1.46494 * 109.49109 * 155.01745 * 13 12 11 16 16 C 1.34779 * 120.00659 * 205.00049 * 15 13 12 17 17 O 1.21290 * 119.99327 * 0.02562 * 16 15 13 18 18 C 1.50691 * 120.00483 * 180.02562 * 16 15 13 19 19 H 1.08999 * 109.69148 * 299.45241 * 18 16 15 20 20 C 1.53432 * 109.69393 * 178.86837 * 18 16 15 21 21 C 1.53112 * 109.54937 * 190.58346 * 20 18 16 22 22 C 1.53420 * 109.57437 * 70.07693 * 21 20 18 23 23 C 1.50592 * 108.33577 * 310.18035 * 22 21 20 24 24 N 1.32909 * 129.16722 * 196.58158 * 23 22 21 25 25 N 1.29016 * 108.64009 * 179.77497 * 24 23 22 26 26 N 1.29114 * 110.25848 * 0.03329 * 25 24 23 27 27 H 0.97000 * 126.00907 * 180.02562 * 26 25 24 28 28 C 1.34399 * 107.98294 * 0.05483 * 26 25 24 29 29 C 1.50882 * 109.35906 * 274.98378 * 13 12 11 30 30 C 1.47603 * 118.64599 * 26.50184 * 9 7 2 31 31 H 0.96993 * 120.00507 * 0.02562 * 1 2 3 32 32 H 1.08992 * 109.44661 * 150.68729 * 10 9 7 33 33 H 1.09007 * 109.42529 * 30.75831 * 10 9 7 34 34 H 1.09007 * 109.32779 * 168.47620 * 11 10 9 35 35 H 1.08997 * 109.19116 * 48.90774 * 11 10 9 36 36 H 1.08996 * 108.51250 * 301.55136 * 12 11 10 37 37 H 1.09002 * 108.51139 * 184.06185 * 12 11 10 38 38 H 0.97009 * 119.99838 * 25.00397 * 15 13 12 39 39 H 1.09001 * 109.46013 * 310.60289 * 20 18 16 40 40 H 1.08998 * 109.45992 * 70.57541 * 20 18 16 41 41 H 1.09004 * 109.45424 * 190.10780 * 21 20 18 42 42 H 1.08999 * 109.45143 * 310.06018 * 21 20 18 43 43 H 1.08993 * 109.69384 * 69.89825 * 22 21 20 44 44 H 1.09005 * 109.68545 * 190.43717 * 22 21 20 45 45 H 1.08994 * 109.36943 * 212.07736 * 29 13 12 46 46 H 1.09000 * 109.36751 * 331.69593 * 29 13 12 47 47 H 1.09001 * 108.94652 * 258.54890 * 30 9 7 48 48 H 1.09006 * 108.94914 * 17.17170 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0601 -1.2194 0.2535 9 7 1.3639 -2.3661 -0.3196 10 6 1.8691 -3.6098 0.2174 11 6 2.9233 -4.2030 -0.7494 12 6 2.2720 -4.7079 -1.9679 13 6 1.5643 -3.6367 -2.7921 14 1 2.1239 -2.7033 -2.7327 15 7 1.4828 -4.0695 -4.1893 16 6 1.3795 -3.1544 -5.1735 17 8 1.3545 -1.9725 -4.9022 18 6 1.2951 -3.5996 -6.6106 19 1 2.1936 -4.1566 -6.8760 20 6 1.1566 -2.3747 -7.5241 21 6 0.8079 -2.8309 -8.9435 22 6 -0.6249 -3.3786 -8.9700 23 6 -0.7731 -4.3722 -7.8481 24 7 -1.7092 -5.2976 -7.6645 25 7 -1.4507 -5.9348 -6.5729 26 7 -0.3793 -5.4669 -6.0251 27 1 0.0214 -5.7785 -5.1985 28 6 0.0829 -4.4717 -6.8012 29 6 0.1727 -3.4255 -2.2486 30 6 0.1800 -2.2993 -1.1986 31 1 -0.4850 0.8399 -0.0004 32 1 1.0465 -4.3151 0.3348 33 1 2.3299 -3.4250 1.1879 34 1 3.4466 -5.0213 -0.2546 35 1 3.6397 -3.4269 -1.0183 36 1 1.5408 -5.4638 -1.6816 37 1 3.0283 -5.1825 -2.5933 38 1 1.5031 -5.0148 -4.4063 39 1 0.3651 -1.7274 -7.1461 40 1 2.0980 -1.8256 -7.5404 41 1 0.8858 -1.9847 -9.6262 42 1 1.5010 -3.6127 -9.2540 43 1 -1.3331 -2.5615 -8.8329 44 1 -0.8123 -3.8708 -9.9244 45 1 -0.4969 -3.1545 -3.0647 46 1 -0.1787 -4.3480 -1.7864 47 1 -0.7193 -2.3788 -0.5877 48 1 0.1735 -1.3373 -1.7112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052662471.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:56 Heat of formation + Delta-G solvation = 71.590268 kcal Electronic energy + Delta-G solvation = -30263.531334 eV Core-core repulsion = 26355.619311 eV Total energy + Delta-G solvation = -3907.912023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.75606 -40.14045 -38.08349 -36.82758 -34.90803 -34.16009 -32.92741 -31.33321 -30.79033 -30.34819 -30.15233 -26.21163 -25.10835 -24.00066 -23.40025 -23.26653 -22.72313 -20.95072 -20.24801 -19.76712 -19.33235 -18.39496 -17.20397 -16.69524 -16.39180 -16.09413 -15.64728 -15.09103 -14.73285 -14.42634 -14.20127 -14.09818 -13.93566 -13.75076 -13.45823 -13.25459 -12.98439 -12.54952 -12.46427 -12.00606 -11.85363 -11.73159 -11.64424 -11.50314 -11.31758 -11.15010 -10.98430 -10.86637 -10.79761 -10.59822 -10.46804 -10.28948 -10.17682 -10.01573 -9.81214 -9.75804 -9.64284 -9.08493 -8.97853 -8.36549 -6.67193 -5.75997 -3.20528 1.23719 2.23958 2.33386 2.63132 3.06445 3.41341 3.47955 3.48715 3.96189 4.12074 4.36062 4.49297 4.52927 4.60053 4.89756 4.94644 5.00252 5.03515 5.13806 5.18063 5.29871 5.42446 5.49157 5.59375 5.61441 5.66598 5.75190 5.77148 5.88690 5.98433 5.98632 6.06899 6.10162 6.12836 6.34783 6.40677 6.46490 6.50087 6.54553 6.66500 6.77089 6.86629 6.97917 7.37056 7.46287 7.71284 7.84984 8.16355 8.20669 8.49176 9.25468 9.92190 10.36350 11.31595 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.003604 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.572501 B = 7768.204670 C = 8645.143262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.009 3.991 3 Si 0.899 3.101 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.156 3.844 11 C -0.146 4.146 12 C -0.107 4.107 13 C 0.153 3.847 14 H 0.107 0.893 15 N -0.733 5.733 16 C 0.509 3.491 17 O -0.503 6.503 18 C -0.032 4.032 19 H 0.117 0.883 20 C -0.099 4.099 21 C -0.119 4.119 22 C -0.036 4.036 23 C -0.005 4.005 24 N -0.257 5.257 25 N -0.081 5.081 26 N -0.379 5.379 27 H 0.444 0.556 28 C -0.009 4.009 29 C -0.148 4.148 30 C 0.183 3.817 31 H 0.253 0.747 32 H 0.031 0.969 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.379 0.621 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.046 0.954 47 H 0.026 0.974 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 -11.572 -15.920 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.145 4.145 13 C 0.050 3.950 14 H 0.125 0.875 15 N -0.385 5.385 16 C 0.293 3.707 17 O -0.376 6.376 18 C -0.056 4.056 19 H 0.134 0.866 20 C -0.138 4.138 21 C -0.157 4.157 22 C -0.075 4.075 23 C -0.145 4.145 24 N -0.123 5.123 25 N -0.060 5.060 26 N -0.099 5.099 27 H 0.291 0.709 28 C -0.145 4.145 29 C -0.188 4.188 30 C 0.058 3.942 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.212 0.788 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.044 0.956 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.528 -11.573 -15.680 19.652 hybrid contribution 1.490 0.705 0.524 1.729 sum 4.018 -10.868 -15.157 19.079 Atomic orbital electron populations 1.70044 1.05271 1.25495 1.53833 1.25016 0.95227 0.98371 1.00403 0.86341 0.79082 0.83860 0.77783 1.21303 1.21791 1.20482 1.19177 0.92386 0.84983 1.42675 0.91692 1.43666 1.32398 1.01955 1.53181 1.20697 0.93873 0.88409 0.94257 1.21447 1.00418 1.00025 0.96780 1.20586 0.99135 0.97363 0.97399 1.20636 0.97927 0.99596 0.76826 0.87468 1.46526 1.75647 1.08235 1.08123 1.20309 0.77181 0.86842 0.86417 1.90832 1.46969 1.16324 1.83431 1.20102 0.94338 0.96642 0.94503 0.86557 1.21492 1.04531 0.94773 0.92987 1.21677 0.95650 1.01488 0.96839 1.20038 0.97901 0.95209 0.94390 1.21721 0.93536 1.00304 0.98909 1.74845 1.22165 1.06502 1.08833 1.78597 1.01209 1.20801 1.05385 1.44832 1.19728 1.24263 1.21115 0.70922 1.21491 1.01701 0.96045 0.95246 1.22462 0.95177 1.01135 1.00009 1.20932 0.88665 0.95501 0.89112 0.93651 0.95029 0.93484 0.92895 0.91823 0.92792 0.93393 0.78795 0.89723 0.89565 0.89901 0.91281 0.89491 0.89525 0.92857 0.93540 0.95594 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 11.01 55.49 0.61 -25.82 16 2 C 0.01 0.25 4.87 -17.43 -0.08 0.16 16 3 Si 0.90 22.12 29.58 -169.99 -5.03 17.09 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.26 -7.10 9.44 -15.06 -0.14 -7.24 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.22 2.27 -172.07 -0.39 -14.62 16 10 C 0.16 3.08 5.65 -4.09 -0.02 3.05 16 11 C -0.15 -2.34 5.74 -28.58 -0.16 -2.51 16 12 C -0.11 -1.49 4.69 -29.79 -0.14 -1.63 16 13 C 0.15 2.48 2.06 -69.22 -0.14 2.34 16 14 H 0.11 2.26 6.92 -51.93 -0.36 1.90 16 15 N -0.73 -9.07 4.50 -55.07 -0.25 -9.32 16 16 C 0.51 7.03 6.97 -10.99 -0.08 6.96 16 17 O -0.50 -9.55 15.50 5.55 0.09 -9.46 16 18 C -0.03 -0.31 2.91 -92.78 -0.27 -0.58 16 19 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 20 C -0.10 -0.93 4.66 -26.45 -0.12 -1.05 16 21 C -0.12 -0.80 5.90 -26.46 -0.16 -0.96 16 22 C -0.04 -0.30 6.30 -27.72 -0.17 -0.48 16 23 C 0.00 -0.06 7.11 -83.12 -0.59 -0.65 16 24 N -0.26 -3.58 12.40 33.16 0.41 -3.17 16 25 N -0.08 -1.08 13.40 60.35 0.81 -0.27 16 26 N -0.38 -4.03 6.76 33.39 0.23 -3.80 16 27 H 0.44 3.57 6.82 -190.07 -1.30 2.27 16 28 C -0.01 -0.10 6.38 -82.49 -0.53 -0.62 16 29 C -0.15 -2.73 5.39 -27.28 -0.15 -2.88 16 30 C 0.18 4.38 4.67 -2.93 -0.01 4.37 16 31 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.05 0.95 7.99 -51.93 -0.41 0.54 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.69 7.36 -51.93 -0.38 0.31 16 37 H 0.05 0.56 8.04 -51.93 -0.42 0.14 16 38 H 0.38 3.26 6.64 -40.82 -0.27 2.99 16 39 H 0.08 0.98 7.75 -51.93 -0.40 0.58 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 1.01 7.85 -51.93 -0.41 0.61 16 46 H 0.05 0.78 7.32 -51.93 -0.38 0.40 16 47 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 48 H 0.08 2.19 6.33 -51.93 -0.33 1.86 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -33.73 369.88 -9.15 -42.88 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -8.42 Total: 2.63 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.77 Total: -1.71 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 1.42 Total: -57.00 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.73 -9.15 -42.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052662471.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.465 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds