Wall clock time and date at job start Tue Mar 31 2020 17:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99966 * 2 1 4 4 H 1.48506 * 109.47088 * 269.99980 * 3 2 1 5 5 H 1.48499 * 109.46909 * 29.99544 * 3 2 1 6 6 H 1.48498 * 109.47432 * 150.00148 * 3 2 1 7 7 C 1.38820 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99943 * 195.69085 * 7 2 1 9 9 N 1.36937 * 119.99538 * 15.68819 * 7 2 1 10 10 C 1.44580 * 118.64251 * 206.51226 * 9 7 2 11 11 C 1.54859 * 109.60132 * 270.73385 * 10 9 7 12 12 C 1.47097 * 110.32080 * 288.72794 * 11 10 9 13 13 C 1.52569 * 114.32357 * 62.80768 * 12 11 10 14 14 H 1.09000 * 109.48993 * 34.97300 * 13 12 11 15 15 N 1.46494 * 109.49109 * 155.01745 * 13 12 11 16 16 C 1.34779 * 120.00659 * 205.00049 * 15 13 12 17 17 O 1.21290 * 119.99327 * 0.02562 * 16 15 13 18 18 C 1.50691 * 120.00483 * 180.02562 * 16 15 13 19 19 H 1.08999 * 109.69148 * 299.45241 * 18 16 15 20 20 C 1.53432 * 109.69393 * 178.86837 * 18 16 15 21 21 C 1.53112 * 109.54937 * 190.58346 * 20 18 16 22 22 C 1.53420 * 109.57437 * 70.07693 * 21 20 18 23 23 C 1.50592 * 108.33577 * 310.18035 * 22 21 20 24 24 N 1.32909 * 129.16722 * 196.58158 * 23 22 21 25 25 N 1.29016 * 108.64009 * 179.77497 * 24 23 22 26 26 N 1.29114 * 110.25848 * 0.03329 * 25 24 23 27 27 H 0.97000 * 126.00907 * 180.02562 * 26 25 24 28 28 C 1.34399 * 107.98294 * 0.05483 * 26 25 24 29 29 C 1.50882 * 109.35906 * 274.98378 * 13 12 11 30 30 C 1.47603 * 118.64599 * 26.50184 * 9 7 2 31 31 H 0.96993 * 120.00507 * 0.02562 * 1 2 3 32 32 H 1.08992 * 109.44661 * 150.68729 * 10 9 7 33 33 H 1.09007 * 109.42529 * 30.75831 * 10 9 7 34 34 H 1.09007 * 109.32779 * 168.47620 * 11 10 9 35 35 H 1.08997 * 109.19116 * 48.90774 * 11 10 9 36 36 H 1.08996 * 108.51250 * 301.55136 * 12 11 10 37 37 H 1.09002 * 108.51139 * 184.06185 * 12 11 10 38 38 H 0.97009 * 119.99838 * 25.00397 * 15 13 12 39 39 H 1.09001 * 109.46013 * 310.60289 * 20 18 16 40 40 H 1.08998 * 109.45992 * 70.57541 * 20 18 16 41 41 H 1.09004 * 109.45424 * 190.10780 * 21 20 18 42 42 H 1.08999 * 109.45143 * 310.06018 * 21 20 18 43 43 H 1.08993 * 109.69384 * 69.89825 * 22 21 20 44 44 H 1.09005 * 109.68545 * 190.43717 * 22 21 20 45 45 H 1.08994 * 109.36943 * 212.07736 * 29 13 12 46 46 H 1.09000 * 109.36751 * 331.69593 * 29 13 12 47 47 H 1.09001 * 108.94652 * 258.54890 * 30 9 7 48 48 H 1.09006 * 108.94914 * 17.17170 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0601 -1.2194 0.2535 9 7 1.3639 -2.3661 -0.3196 10 6 1.8691 -3.6098 0.2174 11 6 2.9233 -4.2030 -0.7494 12 6 2.2720 -4.7079 -1.9679 13 6 1.5643 -3.6367 -2.7921 14 1 2.1239 -2.7033 -2.7327 15 7 1.4828 -4.0695 -4.1893 16 6 1.3795 -3.1544 -5.1735 17 8 1.3545 -1.9725 -4.9022 18 6 1.2951 -3.5996 -6.6106 19 1 2.1936 -4.1566 -6.8760 20 6 1.1566 -2.3747 -7.5241 21 6 0.8079 -2.8309 -8.9435 22 6 -0.6249 -3.3786 -8.9700 23 6 -0.7731 -4.3722 -7.8481 24 7 -1.7092 -5.2976 -7.6645 25 7 -1.4507 -5.9348 -6.5729 26 7 -0.3793 -5.4669 -6.0251 27 1 0.0214 -5.7785 -5.1985 28 6 0.0829 -4.4717 -6.8012 29 6 0.1727 -3.4255 -2.2486 30 6 0.1800 -2.2993 -1.1986 31 1 -0.4850 0.8399 -0.0004 32 1 1.0465 -4.3151 0.3348 33 1 2.3299 -3.4250 1.1879 34 1 3.4466 -5.0213 -0.2546 35 1 3.6397 -3.4269 -1.0183 36 1 1.5408 -5.4638 -1.6816 37 1 3.0283 -5.1825 -2.5933 38 1 1.5031 -5.0148 -4.4063 39 1 0.3651 -1.7274 -7.1461 40 1 2.0980 -1.8256 -7.5404 41 1 0.8858 -1.9847 -9.6262 42 1 1.5010 -3.6127 -9.2540 43 1 -1.3331 -2.5615 -8.8329 44 1 -0.8123 -3.8708 -9.9244 45 1 -0.4969 -3.1545 -3.0647 46 1 -0.1787 -4.3480 -1.7864 47 1 -0.7193 -2.3788 -0.5877 48 1 0.1735 -1.3373 -1.7112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052662471.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:55 Heat of formation + Delta-G solvation = 47.776243 kcal Electronic energy + Delta-G solvation = -30264.563987 eV Core-core repulsion = 26355.619311 eV Total energy + Delta-G solvation = -3908.944677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.64367 -41.32452 -39.46201 -37.74071 -36.42064 -35.20925 -34.42501 -32.78180 -32.39495 -31.27461 -31.17860 -27.91506 -26.25174 -25.34541 -25.02893 -24.23938 -23.60114 -22.11414 -21.50241 -21.07536 -20.54588 -19.32767 -18.59185 -18.16811 -17.50433 -17.35275 -16.82137 -16.56194 -16.14441 -15.67921 -15.49943 -15.17427 -15.02035 -14.83500 -14.70372 -14.49141 -14.41192 -14.05366 -13.66549 -13.33853 -13.15430 -13.04458 -12.79261 -12.72557 -12.57065 -12.45682 -12.26914 -12.17522 -12.04073 -12.00783 -11.79327 -11.66815 -11.57117 -11.44413 -11.39442 -11.37941 -10.96336 -10.47499 -10.22971 -9.97886 -8.67703 -7.88148 -5.33801 0.35431 1.29978 1.40224 1.44609 1.44754 1.50581 1.65667 2.00793 2.48804 3.16285 3.26725 3.27450 3.53046 3.64221 3.70674 3.77711 3.89790 4.04010 4.15807 4.25848 4.30445 4.32140 4.40985 4.43044 4.43448 4.56634 4.61372 4.79098 4.90460 4.95285 4.95731 4.97547 5.09458 5.10846 5.17710 5.19440 5.20214 5.29800 5.31566 5.43769 5.45912 5.52353 5.59167 5.66736 5.73219 5.73669 6.37762 6.38798 7.12263 7.16386 7.28601 7.94022 8.32024 9.16903 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.003604 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.572501 B = 7768.204670 C = 8645.143262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.956 3.044 4 H -0.294 1.294 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.603 5.603 10 C 0.146 3.854 11 C -0.132 4.132 12 C -0.105 4.105 13 C 0.164 3.836 14 H 0.056 0.944 15 N -0.716 5.716 16 C 0.506 3.494 17 O -0.562 6.562 18 C -0.018 4.018 19 H 0.160 0.840 20 C -0.102 4.102 21 C -0.106 4.106 22 C -0.039 4.039 23 C -0.013 4.013 24 N -0.288 5.288 25 N -0.104 5.104 26 N -0.367 5.367 27 H 0.454 0.546 28 C -0.007 4.007 29 C -0.132 4.132 30 C 0.197 3.803 31 H 0.246 0.754 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.404 0.596 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.041 0.959 46 H 0.074 0.926 47 H -0.008 1.008 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.158 -14.288 -17.481 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.244 4.244 3 Si 0.785 3.215 4 H -0.221 1.221 5 H -0.221 1.221 6 H -0.187 1.187 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.325 5.325 10 C 0.020 3.980 11 C -0.172 4.172 12 C -0.143 4.143 13 C 0.059 3.941 14 H 0.075 0.925 15 N -0.369 5.369 16 C 0.292 3.708 17 O -0.438 6.438 18 C -0.041 4.041 19 H 0.177 0.823 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.078 4.078 23 C -0.153 4.153 24 N -0.153 5.153 25 N -0.083 5.083 26 N -0.089 5.089 27 H 0.303 0.697 28 C -0.144 4.144 29 C -0.172 4.172 30 C 0.071 3.929 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.241 0.759 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.121 0.879 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.010 0.990 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.788 -14.388 -17.235 22.956 hybrid contribution 0.794 1.528 1.060 2.022 sum 5.582 -12.860 -16.174 21.404 Atomic orbital electron populations 1.70208 1.06634 1.25432 1.56003 1.25726 0.95931 1.01377 1.01412 0.85420 0.78558 0.80312 0.77174 1.22143 1.22090 1.18707 1.19505 0.92598 0.86283 1.40772 0.91490 1.43830 1.32121 1.02837 1.53751 1.20974 0.95275 0.86918 0.94858 1.21276 0.98732 1.00308 0.96902 1.20551 1.00500 0.96670 0.96587 1.20209 0.95698 0.98913 0.79241 0.92526 1.46216 1.74755 1.09528 1.06404 1.21073 0.75546 0.86075 0.88135 1.90826 1.49515 1.19005 1.84501 1.20150 0.95607 0.97019 0.91310 0.82325 1.21527 1.03821 0.94242 0.94448 1.21652 0.94791 1.02740 0.95239 1.20215 0.99007 0.94499 0.94102 1.22286 0.92867 1.00142 1.00012 1.74821 1.23382 1.07670 1.09457 1.78539 1.02256 1.21674 1.05822 1.44815 1.19030 1.23829 1.21235 0.69666 1.21631 1.01823 0.95878 0.95054 1.22236 0.96961 0.99863 0.98104 1.20552 0.87540 0.95360 0.89477 0.94508 0.93571 0.94417 0.89116 0.94175 0.90160 0.89620 0.75886 0.92820 0.88985 0.87946 0.89207 0.89901 0.87941 0.93983 0.90752 0.98991 0.95315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 11.01 21.65 0.24 -57.70 16 2 C -0.05 -2.86 4.87 84.86 0.41 -2.45 16 3 Si 0.96 47.12 29.58 68.60 2.03 49.15 16 4 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 5 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.26 -14.53 9.44 84.04 0.79 -13.74 16 8 H 0.07 3.63 7.88 -2.92 -0.02 3.60 16 9 N -0.60 -29.75 2.27 -698.31 -1.59 -31.34 16 10 C 0.15 5.59 5.65 87.37 0.49 6.09 16 11 C -0.13 -3.84 5.74 29.39 0.17 -3.67 16 12 C -0.11 -2.50 4.69 28.62 0.13 -2.37 16 13 C 0.16 5.11 2.06 44.16 0.09 5.21 16 14 H 0.06 2.42 6.92 -2.39 -0.02 2.41 16 15 N -0.72 -16.06 4.50 -446.52 -2.01 -18.07 16 16 C 0.51 13.44 6.97 87.65 0.61 14.06 16 17 O -0.56 -22.01 15.50 -3.06 -0.05 -22.06 16 18 C -0.02 -0.30 2.91 -12.19 -0.04 -0.34 16 19 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 20 C -0.10 -1.74 4.66 30.78 0.14 -1.59 16 21 C -0.11 -1.13 5.90 30.77 0.18 -0.94 16 22 C -0.04 -0.58 6.30 29.95 0.19 -0.39 16 23 C -0.01 -0.27 7.11 41.75 0.30 0.03 16 24 N -0.29 -7.74 12.40 -48.99 -0.61 -8.35 16 25 N -0.10 -2.65 13.40 37.02 0.50 -2.16 16 26 N -0.37 -7.00 6.76 -48.26 -0.33 -7.33 16 27 H 0.45 5.93 6.82 -219.68 -1.50 4.43 16 28 C -0.01 -0.14 6.38 41.50 0.26 0.12 16 29 C -0.13 -4.86 5.39 30.24 0.16 -4.69 16 30 C 0.20 9.86 4.67 86.50 0.40 10.26 16 31 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.05 1.63 8.07 -2.39 -0.02 1.61 16 33 H 0.04 1.49 7.99 -2.38 -0.02 1.47 16 34 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.58 7.36 -2.39 -0.02 1.57 16 37 H 0.09 1.49 8.04 -2.39 -0.02 1.47 16 38 H 0.40 5.26 6.64 -92.70 -0.62 4.65 16 39 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.64 8.12 -2.39 -0.02 0.62 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.04 1.62 7.85 -2.39 -0.02 1.61 16 46 H 0.07 2.33 7.32 -2.39 -0.02 2.32 16 47 H -0.01 -0.44 8.03 -2.39 -0.02 -0.46 16 48 H 0.03 1.70 6.33 -2.38 -0.02 1.69 16 Total: -1.00 -81.07 369.88 1.38 -79.69 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -1.12 Total: 12.58 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 4.31 Total: 5.58 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -3.79 Total: -124.94 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -81.07 1.38 -79.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052662471.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.467 kcal (2) G-P(sol) polarization free energy of solvation -81.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds