Wall clock time and date at job start Tue Mar 31 2020 18:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48498 * 109.46655 * 269.99401 * 3 2 1 5 5 H 1.48493 * 109.47402 * 29.99524 * 3 2 1 6 6 H 1.48497 * 109.46980 * 149.99836 * 3 2 1 7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00027 * 195.71420 * 7 2 1 9 9 N 1.36936 * 120.00147 * 15.71271 * 7 2 1 10 10 C 1.44576 * 118.64501 * 206.54702 * 9 7 2 11 11 C 1.54867 * 109.57815 * 270.71540 * 10 9 7 12 12 C 1.47100 * 110.31821 * 288.74676 * 11 10 9 13 13 C 1.52567 * 114.32638 * 62.80448 * 12 11 10 14 14 H 1.08992 * 109.48862 * 34.94946 * 13 12 11 15 15 N 1.46501 * 109.48747 * 155.00029 * 13 12 11 16 16 C 1.34774 * 119.99815 * 204.99815 * 15 13 12 17 17 O 1.21604 * 119.99935 * 359.97438 * 16 15 13 18 18 C 1.47520 * 120.00191 * 179.97438 * 16 15 13 19 19 C 1.36599 * 125.77124 * 179.70907 * 18 16 15 20 20 N 1.34817 * 106.83868 * 179.89792 * 19 18 16 21 21 C 1.46499 * 126.59114 * 180.10802 * 20 19 18 22 22 C 1.53002 * 109.46612 * 125.28343 * 21 20 19 23 23 C 1.53002 * 117.49428 * 243.61716 * 22 21 20 24 24 C 1.52995 * 60.00109 * 252.51297 * 23 22 21 25 25 N 1.40211 * 106.80913 * 0.36706 * 20 19 18 26 26 N 1.28754 * 108.37047 * 359.76729 * 25 20 19 27 27 C 1.50880 * 109.35714 * 274.98393 * 13 12 11 28 28 C 1.47583 * 118.62322 * 26.50043 * 9 7 2 29 29 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.44592 * 150.69057 * 10 9 7 31 31 H 1.09000 * 109.45128 * 30.74179 * 10 9 7 32 32 H 1.09002 * 109.32751 * 49.00297 * 11 10 9 33 33 H 1.08994 * 109.33056 * 168.65895 * 11 10 9 34 34 H 1.09009 * 108.50594 * 184.05514 * 12 11 10 35 35 H 1.09000 * 108.51051 * 301.54317 * 12 11 10 36 36 H 0.96995 * 120.00085 * 24.99278 * 15 13 12 37 37 H 1.08001 * 126.58045 * 0.04798 * 19 18 16 38 38 H 1.09000 * 109.47015 * 245.27518 * 21 20 19 39 39 H 1.08994 * 109.47404 * 5.28462 * 21 20 19 40 40 H 1.08990 * 115.55403 * 29.32601 * 22 21 20 41 41 H 1.09000 * 117.50114 * 0.02562 * 23 22 21 42 42 H 1.09003 * 117.49885 * 145.02244 * 23 22 21 43 43 H 1.09008 * 117.49956 * 252.51120 * 24 23 22 44 44 H 1.09001 * 117.50404 * 107.49406 * 24 23 22 45 45 H 1.08997 * 109.36857 * 212.08393 * 27 13 12 46 46 H 1.09005 * 109.36868 * 331.82288 * 27 13 12 47 47 H 1.09004 * 108.94507 * 17.20076 * 28 9 7 48 48 H 1.08999 * 108.89440 * 258.51064 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0600 -1.2195 0.2539 9 7 1.3640 -2.3661 -0.3201 10 6 1.8685 -3.6097 0.2175 11 6 2.9232 -4.2030 -0.7490 12 6 2.2724 -4.7073 -1.9680 13 6 1.5653 -3.6357 -2.7923 14 1 2.1248 -2.7023 -2.7319 15 7 1.4848 -4.0679 -4.1898 16 6 1.3822 -3.1523 -5.1734 17 8 1.3560 -1.9675 -4.9009 18 6 1.3017 -3.5874 -6.5807 19 6 1.1901 -2.7650 -7.6656 20 7 1.1497 -3.5585 -8.7547 21 6 1.0359 -3.1230 -10.1489 22 6 2.1870 -3.7161 -10.9639 23 6 3.1883 -2.7404 -11.5857 24 6 2.1814 -3.4733 -12.4745 25 7 1.2314 -4.8810 -8.2961 26 7 1.3198 -4.8603 -7.0118 27 6 0.1736 -3.4244 -2.2493 28 6 0.1806 -2.2986 -1.1994 29 1 -0.4850 0.8400 -0.0004 30 1 1.0457 -4.3150 0.3341 31 1 2.3289 -3.4254 1.1882 32 1 3.6421 -3.4289 -1.0177 33 1 3.4440 -5.0233 -0.2553 34 1 3.0290 -5.1817 -2.5932 35 1 1.5409 -5.4632 -1.6824 36 1 1.5054 -5.0130 -4.4071 37 1 1.1454 -1.6860 -7.6534 38 1 0.0860 -3.4648 -10.5599 39 1 1.0812 -2.0350 -10.1945 40 1 2.5700 -4.6729 -10.6093 41 1 3.0271 -1.6762 -11.4138 42 1 4.2304 -3.0553 -11.6401 43 1 2.5612 -4.2704 -13.1137 44 1 1.3577 -2.8913 -12.8877 45 1 -0.4957 -3.1531 -3.0657 46 1 -0.1774 -4.3463 -1.7856 47 1 0.1750 -1.3366 -1.7119 48 1 -0.7183 -2.3789 -0.5882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052826734.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:39 Heat of formation + Delta-G solvation = 109.451193 kcal Electronic energy + Delta-G solvation = -28701.186990 eV Core-core repulsion = 24794.916740 eV Total energy + Delta-G solvation = -3906.270250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.31852 -39.43734 -38.23265 -37.46146 -34.64795 -34.31448 -32.75815 -31.30036 -30.73003 -30.19858 -28.24333 -25.96756 -24.39072 -23.33895 -23.10798 -22.92294 -22.54497 -21.37652 -20.14325 -19.93611 -19.12540 -18.16580 -16.67410 -16.52820 -16.28673 -15.85465 -15.54876 -14.99199 -14.83684 -14.65696 -14.35634 -14.30014 -13.88218 -13.72986 -13.42172 -13.07588 -12.78443 -12.56450 -12.33423 -12.17849 -12.09583 -11.83206 -11.53542 -11.42778 -11.12357 -11.00890 -10.82549 -10.79624 -10.71626 -10.43985 -10.33965 -10.12297 -9.97931 -9.87719 -9.66799 -9.60105 -9.49230 -9.37190 -8.60860 -8.25158 -6.54935 -5.65843 -3.09486 1.00475 1.72885 1.77171 3.12748 3.41754 3.47977 3.52078 3.54415 3.54997 3.77837 4.14950 4.16971 4.33166 4.39453 4.61709 4.63329 4.71701 4.80788 4.91794 5.06344 5.21976 5.26576 5.30804 5.38874 5.51400 5.55253 5.57656 5.63231 5.73206 5.86739 6.09878 6.15947 6.20772 6.31315 6.41156 6.53176 6.59348 6.69709 6.77818 6.86765 6.94183 7.09586 7.16025 7.56106 7.71049 7.84043 7.95491 7.96926 8.52802 8.60091 9.36363 10.03697 10.48132 11.41639 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.002616 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.774761 B =10702.214846 C =11758.198864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.006 3.994 3 Si 0.899 3.101 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.257 4.257 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.156 3.844 11 C -0.145 4.145 12 C -0.107 4.107 13 C 0.155 3.845 14 H 0.104 0.896 15 N -0.711 5.711 16 C 0.596 3.404 17 O -0.526 6.526 18 C -0.094 4.094 19 C 0.092 3.908 20 N -0.360 5.360 21 C 0.155 3.845 22 C -0.176 4.176 23 C -0.176 4.176 24 C -0.165 4.165 25 N -0.068 5.068 26 N -0.206 5.206 27 C -0.147 4.147 28 C 0.183 3.817 29 H 0.252 0.748 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.399 0.601 37 H 0.205 0.795 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.078 0.922 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -8.903 -22.686 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.729 3.271 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.387 4.387 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.145 4.145 13 C 0.052 3.948 14 H 0.122 0.878 15 N -0.361 5.361 16 C 0.379 3.621 17 O -0.401 6.401 18 C -0.233 4.233 19 C -0.065 4.065 20 N -0.145 5.145 21 C 0.034 3.966 22 C -0.195 4.195 23 C -0.213 4.213 24 C -0.203 4.203 25 N -0.048 5.048 26 N -0.080 5.080 27 C -0.187 4.187 28 C 0.057 3.943 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.233 0.767 37 H 0.221 0.779 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.443 -9.363 -22.885 24.847 hybrid contribution 0.371 1.452 -0.156 1.507 sum 2.813 -7.911 -23.041 24.523 Atomic orbital electron populations 1.70060 1.05214 1.25293 1.54232 1.25007 0.95237 0.98295 1.00716 0.86341 0.79052 0.83971 0.77715 1.21374 1.21921 1.20555 1.19183 0.92349 0.85033 1.42092 0.91765 1.43675 1.32486 1.01923 1.53179 1.20701 0.93922 0.88395 0.94179 1.21449 1.00327 0.99918 0.96858 1.20574 0.99277 0.97469 0.97230 1.20576 0.97801 0.99338 0.77099 0.87786 1.46115 1.73464 1.09530 1.06976 1.16759 0.77185 0.85888 0.82303 1.90897 1.50166 1.16065 1.82929 1.21686 1.16288 0.89025 0.96337 1.23419 0.97850 0.99652 0.85544 1.50408 1.49723 1.06755 1.07642 1.21582 0.99750 1.00239 0.75076 1.22536 0.99425 1.02054 0.95471 1.23152 0.96584 0.97992 1.03564 1.22994 1.02169 1.03498 0.91609 1.81921 1.22651 0.96363 1.03866 1.74622 1.10147 1.19518 1.03723 1.22455 0.95417 1.00928 0.99916 1.20949 0.88527 0.95667 0.89138 0.93786 0.94956 0.93605 0.91919 0.93025 0.93281 0.92716 0.76673 0.77867 0.87933 0.87566 0.86170 0.88231 0.88287 0.88054 0.88192 0.92570 0.93498 0.90338 0.95661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 11.01 55.49 0.61 -26.29 16 2 C 0.01 0.17 4.87 -17.43 -0.08 0.09 16 3 Si 0.90 22.54 29.58 -169.99 -5.03 17.51 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.26 -7.13 9.44 -15.06 -0.14 -7.28 16 8 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.82 2.27 -172.11 -0.39 -15.21 16 10 C 0.16 3.26 5.66 -4.08 -0.02 3.23 16 11 C -0.14 -2.55 5.74 -28.58 -0.16 -2.72 16 12 C -0.11 -1.75 4.69 -29.78 -0.14 -1.89 16 13 C 0.15 2.89 2.06 -69.22 -0.14 2.75 16 14 H 0.10 2.39 6.92 -51.93 -0.36 2.03 16 15 N -0.71 -11.60 4.93 -56.11 -0.28 -11.88 16 16 C 0.60 10.33 7.64 -12.48 -0.10 10.23 16 17 O -0.53 -11.06 16.53 5.27 0.09 -10.98 16 18 C -0.09 -1.35 6.99 -83.55 -0.58 -1.93 16 19 C 0.09 1.02 11.27 -16.83 -0.19 0.83 16 20 N -0.36 -3.52 3.69 -61.06 -0.23 -3.75 16 21 C 0.15 0.86 6.82 -4.04 -0.03 0.83 16 22 C -0.18 -1.01 5.94 -90.62 -0.54 -1.55 16 23 C -0.18 -0.85 10.18 -26.73 -0.27 -1.12 16 24 C -0.17 -0.66 10.25 -26.73 -0.27 -0.94 16 25 N -0.07 -0.86 13.48 60.35 0.81 -0.05 16 26 N -0.21 -2.93 12.04 32.85 0.40 -2.54 16 27 C -0.15 -2.96 5.39 -27.30 -0.15 -3.10 16 28 C 0.18 4.53 4.67 -2.96 -0.01 4.52 16 29 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.05 0.97 7.99 -51.93 -0.41 0.55 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.71 8.04 -51.92 -0.42 0.30 16 35 H 0.05 0.83 7.36 -51.93 -0.38 0.45 16 36 H 0.40 5.62 8.29 -40.82 -0.34 5.28 16 37 H 0.20 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.11 0.34 7.82 -51.93 -0.41 -0.07 16 40 H 0.12 0.92 7.94 -51.93 -0.41 0.51 16 41 H 0.10 0.40 8.03 -51.93 -0.42 -0.02 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.38 8.14 -51.92 -0.42 -0.05 16 44 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.06 1.14 7.85 -51.93 -0.41 0.73 16 46 H 0.05 0.86 7.32 -51.93 -0.38 0.48 16 47 H 0.08 2.24 6.33 -51.93 -0.33 1.91 16 48 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -33.73 389.51 -8.59 -42.32 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.61 Total: 3.02 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -2.84 Total: 1.96 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.93 Total: -59.71 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.73 -8.59 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052826734.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.771 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds