Wall clock time and date at job start Tue Mar 31 2020 18:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48498 * 109.46655 * 269.99401 * 3 2 1 5 5 H 1.48493 * 109.47402 * 29.99524 * 3 2 1 6 6 H 1.48497 * 109.46980 * 149.99836 * 3 2 1 7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00027 * 195.71420 * 7 2 1 9 9 N 1.36936 * 120.00147 * 15.71271 * 7 2 1 10 10 C 1.44576 * 118.64501 * 206.54702 * 9 7 2 11 11 C 1.54867 * 109.57815 * 270.71540 * 10 9 7 12 12 C 1.47100 * 110.31821 * 288.74676 * 11 10 9 13 13 C 1.52567 * 114.32638 * 62.80448 * 12 11 10 14 14 H 1.08992 * 109.48862 * 34.94946 * 13 12 11 15 15 N 1.46501 * 109.48747 * 155.00029 * 13 12 11 16 16 C 1.34774 * 119.99815 * 204.99815 * 15 13 12 17 17 O 1.21604 * 119.99935 * 359.97438 * 16 15 13 18 18 C 1.47520 * 120.00191 * 179.97438 * 16 15 13 19 19 C 1.36599 * 125.77124 * 179.70907 * 18 16 15 20 20 N 1.34817 * 106.83868 * 179.89792 * 19 18 16 21 21 C 1.46499 * 126.59114 * 180.10802 * 20 19 18 22 22 C 1.53002 * 109.46612 * 125.28343 * 21 20 19 23 23 C 1.53002 * 117.49428 * 243.61716 * 22 21 20 24 24 C 1.52995 * 60.00109 * 252.51297 * 23 22 21 25 25 N 1.40211 * 106.80913 * 0.36706 * 20 19 18 26 26 N 1.28754 * 108.37047 * 359.76729 * 25 20 19 27 27 C 1.50880 * 109.35714 * 274.98393 * 13 12 11 28 28 C 1.47583 * 118.62322 * 26.50043 * 9 7 2 29 29 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.44592 * 150.69057 * 10 9 7 31 31 H 1.09000 * 109.45128 * 30.74179 * 10 9 7 32 32 H 1.09002 * 109.32751 * 49.00297 * 11 10 9 33 33 H 1.08994 * 109.33056 * 168.65895 * 11 10 9 34 34 H 1.09009 * 108.50594 * 184.05514 * 12 11 10 35 35 H 1.09000 * 108.51051 * 301.54317 * 12 11 10 36 36 H 0.96995 * 120.00085 * 24.99278 * 15 13 12 37 37 H 1.08001 * 126.58045 * 0.04798 * 19 18 16 38 38 H 1.09000 * 109.47015 * 245.27518 * 21 20 19 39 39 H 1.08994 * 109.47404 * 5.28462 * 21 20 19 40 40 H 1.08990 * 115.55403 * 29.32601 * 22 21 20 41 41 H 1.09000 * 117.50114 * 0.02562 * 23 22 21 42 42 H 1.09003 * 117.49885 * 145.02244 * 23 22 21 43 43 H 1.09008 * 117.49956 * 252.51120 * 24 23 22 44 44 H 1.09001 * 117.50404 * 107.49406 * 24 23 22 45 45 H 1.08997 * 109.36857 * 212.08393 * 27 13 12 46 46 H 1.09005 * 109.36868 * 331.82288 * 27 13 12 47 47 H 1.09004 * 108.94507 * 17.20076 * 28 9 7 48 48 H 1.08999 * 108.89440 * 258.51064 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0600 -1.2195 0.2539 9 7 1.3640 -2.3661 -0.3201 10 6 1.8685 -3.6097 0.2175 11 6 2.9232 -4.2030 -0.7490 12 6 2.2724 -4.7073 -1.9680 13 6 1.5653 -3.6357 -2.7923 14 1 2.1248 -2.7023 -2.7319 15 7 1.4848 -4.0679 -4.1898 16 6 1.3822 -3.1523 -5.1734 17 8 1.3560 -1.9675 -4.9009 18 6 1.3017 -3.5874 -6.5807 19 6 1.1901 -2.7650 -7.6656 20 7 1.1497 -3.5585 -8.7547 21 6 1.0359 -3.1230 -10.1489 22 6 2.1870 -3.7161 -10.9639 23 6 3.1883 -2.7404 -11.5857 24 6 2.1814 -3.4733 -12.4745 25 7 1.2314 -4.8810 -8.2961 26 7 1.3198 -4.8603 -7.0118 27 6 0.1736 -3.4244 -2.2493 28 6 0.1806 -2.2986 -1.1994 29 1 -0.4850 0.8400 -0.0004 30 1 1.0457 -4.3150 0.3341 31 1 2.3289 -3.4254 1.1882 32 1 3.6421 -3.4289 -1.0177 33 1 3.4440 -5.0233 -0.2553 34 1 3.0290 -5.1817 -2.5932 35 1 1.5409 -5.4632 -1.6824 36 1 1.5054 -5.0130 -4.4071 37 1 1.1454 -1.6860 -7.6534 38 1 0.0860 -3.4648 -10.5599 39 1 1.0812 -2.0350 -10.1945 40 1 2.5700 -4.6729 -10.6093 41 1 3.0271 -1.6762 -11.4138 42 1 4.2304 -3.0553 -11.6401 43 1 2.5612 -4.2704 -13.1137 44 1 1.3577 -2.8913 -12.8877 45 1 -0.4957 -3.1531 -3.0657 46 1 -0.1774 -4.3463 -1.7856 47 1 0.1750 -1.3366 -1.7119 48 1 -0.7183 -2.3789 -0.5882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052826734.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:38 Heat of formation + Delta-G solvation = 87.187846 kcal Electronic energy + Delta-G solvation = -28702.152401 eV Core-core repulsion = 24794.916740 eV Total energy + Delta-G solvation = -3907.235661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.26469 -40.86894 -39.12335 -38.62409 -36.31518 -35.17641 -34.41974 -32.74361 -32.43517 -31.61040 -28.96957 -27.77507 -25.90534 -25.13884 -24.28589 -23.50787 -23.26912 -22.14861 -21.59685 -21.09487 -20.84436 -19.14019 -18.52104 -17.56175 -17.33031 -17.18300 -16.80403 -16.21465 -16.14899 -15.75924 -15.59291 -15.44456 -15.23130 -15.00915 -14.78160 -14.38547 -14.34215 -13.98981 -13.59616 -13.36671 -13.22928 -12.98146 -12.85386 -12.73936 -12.48837 -12.44043 -12.29545 -12.11148 -11.98278 -11.71858 -11.64375 -11.49795 -11.39256 -11.33937 -11.31805 -11.10990 -10.98472 -10.42614 -10.39902 -10.00980 -8.61036 -7.81763 -5.27134 0.11307 0.60752 1.03394 1.44162 1.48862 1.54702 2.14370 2.25257 2.54007 2.77269 3.15350 3.24748 3.32299 3.70115 3.73723 3.81723 3.85623 3.90932 3.95676 4.03162 4.10290 4.13041 4.40849 4.42922 4.48962 4.51175 4.51986 4.72319 4.75283 4.77510 4.87526 4.96140 4.98177 5.04586 5.11901 5.18358 5.21618 5.24551 5.27024 5.37321 5.43175 5.53275 5.60983 5.65417 5.72682 5.81371 6.45437 6.48592 6.89420 7.22116 7.22546 8.00283 8.38748 9.23393 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.002616 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.774761 B =10702.214846 C =11758.198864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.958 3.042 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.148 3.852 11 C -0.131 4.131 12 C -0.105 4.105 13 C 0.165 3.835 14 H 0.057 0.943 15 N -0.700 5.700 16 C 0.596 3.404 17 O -0.572 6.572 18 C -0.120 4.120 19 C 0.107 3.893 20 N -0.344 5.344 21 C 0.145 3.855 22 C -0.189 4.189 23 C -0.180 4.180 24 C -0.150 4.150 25 N -0.081 5.081 26 N -0.220 5.220 27 C -0.132 4.132 28 C 0.196 3.804 29 H 0.246 0.754 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.413 0.587 37 H 0.230 0.770 38 H 0.120 0.880 39 H 0.137 0.863 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.118 0.882 45 H 0.049 0.951 46 H 0.072 0.928 47 H 0.032 0.968 48 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 -10.227 -24.613 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.787 3.213 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.171 4.171 12 C -0.143 4.143 13 C 0.060 3.940 14 H 0.076 0.924 15 N -0.351 5.351 16 C 0.381 3.619 17 O -0.450 6.450 18 C -0.260 4.260 19 C -0.051 4.051 20 N -0.128 5.128 21 C 0.027 3.973 22 C -0.208 4.208 23 C -0.217 4.217 24 C -0.188 4.188 25 N -0.061 5.061 26 N -0.094 5.094 27 C -0.172 4.172 28 C 0.070 3.930 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.250 0.750 37 H 0.246 0.754 38 H 0.138 0.862 39 H 0.155 0.845 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.121 0.879 44 H 0.137 0.863 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 3.285 -10.768 -24.841 27.273 hybrid contribution 0.133 1.820 0.340 1.856 sum 3.418 -8.948 -24.501 26.307 Atomic orbital electron populations 1.70215 1.06519 1.25405 1.56060 1.25735 0.96020 1.01339 1.01553 0.85395 0.78429 0.80305 0.77172 1.22073 1.21977 1.19000 1.19484 0.92523 0.86297 1.40591 0.91692 1.43850 1.32282 1.02797 1.53701 1.20950 0.95193 0.87010 0.94711 1.21288 0.98834 1.00258 0.96767 1.20537 1.00326 0.96822 0.96585 1.20246 0.96254 0.98628 0.78824 0.92426 1.45922 1.72999 1.10216 1.05925 1.17126 0.75939 0.85262 0.83582 1.90873 1.52351 1.17934 1.83882 1.21364 1.19218 0.90013 0.95369 1.23779 0.95772 1.00559 0.84984 1.50679 1.47674 1.05559 1.08897 1.22083 1.00498 1.02161 0.72604 1.22425 1.00080 1.01417 0.96890 1.23237 0.96315 0.98471 1.03682 1.23092 1.02129 1.03220 0.90334 1.81843 1.22940 0.98042 1.03282 1.74587 1.10761 1.19581 1.04452 1.22249 0.96653 0.99938 0.98350 1.20592 0.87599 0.95359 0.89407 0.94455 0.93424 0.94171 0.94194 0.89249 0.90650 0.90316 0.74975 0.75357 0.86162 0.84477 0.88505 0.87055 0.88981 0.87929 0.86345 0.93233 0.90895 0.94947 0.98453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 11.01 21.65 0.24 -57.94 16 2 C -0.05 -3.03 4.87 84.86 0.41 -2.61 16 3 Si 0.96 47.68 29.58 68.60 2.03 49.71 16 4 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 5 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.26 -14.72 9.44 84.03 0.79 -13.92 16 8 H 0.07 3.62 7.88 -2.91 -0.02 3.59 16 9 N -0.60 -30.92 2.27 -698.42 -1.58 -32.51 16 10 C 0.15 6.01 5.66 87.38 0.49 6.51 16 11 C -0.13 -4.32 5.74 29.40 0.17 -4.16 16 12 C -0.10 -3.12 4.69 28.62 0.13 -2.99 16 13 C 0.16 6.09 2.06 44.16 0.09 6.18 16 14 H 0.06 2.72 6.92 -2.39 -0.02 2.71 16 15 N -0.70 -22.40 4.93 -449.70 -2.22 -24.62 16 16 C 0.60 20.80 7.64 86.69 0.66 21.46 16 17 O -0.57 -24.88 16.53 -4.04 -0.07 -24.95 16 18 C -0.12 -3.37 6.99 40.82 0.29 -3.08 16 19 C 0.11 2.22 11.27 83.85 0.95 3.16 16 20 N -0.34 -6.05 3.69 -347.10 -1.28 -7.33 16 21 C 0.15 1.21 6.82 86.38 0.59 1.80 16 22 C -0.19 -1.81 5.94 -10.79 -0.06 -1.88 16 23 C -0.18 -1.37 10.18 30.59 0.31 -1.06 16 24 C -0.15 -0.83 10.25 30.59 0.31 -0.51 16 25 N -0.08 -1.95 13.48 37.02 0.50 -1.45 16 26 N -0.22 -6.06 12.04 -49.99 -0.60 -6.66 16 27 C -0.13 -5.33 5.39 30.22 0.16 -5.16 16 28 C 0.20 10.14 4.67 86.49 0.40 10.55 16 29 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 30 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 31 H 0.04 1.66 7.99 -2.39 -0.02 1.64 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 1.91 8.04 -2.38 -0.02 1.89 16 35 H 0.08 2.04 7.36 -2.39 -0.02 2.02 16 36 H 0.41 10.94 8.29 -92.71 -0.77 10.17 16 37 H 0.23 3.43 8.06 -2.91 -0.02 3.40 16 38 H 0.12 0.64 8.14 -2.39 -0.02 0.63 16 39 H 0.14 0.34 7.82 -2.39 -0.02 0.32 16 40 H 0.10 1.42 7.94 -2.39 -0.02 1.40 16 41 H 0.11 0.58 8.03 -2.39 -0.02 0.57 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.05 2.04 7.85 -2.39 -0.02 2.02 16 46 H 0.07 2.56 7.32 -2.38 -0.02 2.54 16 47 H 0.03 1.95 6.33 -2.38 -0.02 1.93 16 48 H 0.00 -0.14 8.03 -2.39 -0.02 -0.16 16 Total: -1.00 -78.02 389.51 2.92 -75.10 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.20 Total: 16.36 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 5.70 Total: 14.28 kcal Atomic # 7 Polarization: -125.56 SS G_CDS: -4.95 Total: -130.51 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.07 Total: -24.95 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -78.02 2.92 -75.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052826734.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.293 kcal (2) G-P(sol) polarization free energy of solvation -78.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds